Wall clock time and date at job start Tue Mar 31 2020 19:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47229 * 2 1 4 4 H 1.08995 * 109.47280 * 304.99944 * 3 2 1 5 5 C 1.53005 * 109.47072 * 184.99968 * 3 2 1 6 6 N 1.46501 * 109.47298 * 65.00033 * 3 2 1 7 7 C 1.34772 * 120.00239 * 205.00271 * 6 3 2 8 8 O 1.21281 * 119.99999 * 359.97438 * 7 6 3 9 9 C 1.50707 * 120.00168 * 180.02562 * 7 6 3 10 10 H 1.08999 * 109.47171 * 59.99203 * 9 7 6 11 11 C 1.52997 * 109.46503 * 299.99673 * 9 7 6 12 12 O 1.45202 * 109.47006 * 179.97438 * 9 7 6 13 13 C 1.34756 * 116.99730 * 209.99556 * 12 9 7 14 14 O 1.21514 * 120.00085 * 0.02562 * 13 12 9 15 15 C 1.47389 * 120.00029 * 180.02562 * 13 12 9 16 16 C 1.39733 * 120.20532 * 0.02562 * 15 13 12 17 17 C 1.37798 * 119.91851 * 180.02562 * 16 15 13 18 18 C 1.38598 * 120.33078 * 359.97438 * 17 16 15 19 19 C 1.38016 * 120.41232 * 0.02733 * 18 17 16 20 20 C 1.38839 * 120.07969 * 359.97438 * 19 18 17 21 21 O 1.35503 * 120.16664 * 180.02562 * 20 19 18 22 22 C 1.34818 * 116.99847 * 354.41394 * 21 20 19 23 23 H 1.07993 * 120.00260 * 5.07057 * 22 21 20 24 24 C 1.38709 * 119.99807 * 185.07457 * 22 21 20 25 25 N 1.31518 * 119.99862 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99750 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47141 * 60.00030 * 26 24 22 28 28 H 1.48497 * 109.46870 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47050 * 299.99669 * 26 24 22 30 30 H 1.08997 * 109.46746 * 299.99924 * 1 2 3 31 31 H 1.09000 * 109.46982 * 59.99994 * 1 2 3 32 32 H 1.08995 * 109.46796 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46746 * 240.00076 * 2 1 3 34 34 H 1.09000 * 109.46982 * 120.00006 * 2 1 3 35 35 H 1.08995 * 109.47049 * 300.00117 * 5 3 2 36 36 H 1.08998 * 109.47007 * 60.00598 * 5 3 2 37 37 H 1.09001 * 109.46712 * 180.02562 * 5 3 2 38 38 H 0.97005 * 119.99768 * 24.99957 * 6 3 2 39 39 H 1.09004 * 109.47728 * 60.00348 * 11 9 7 40 40 H 1.09000 * 109.46642 * 180.02562 * 11 9 7 41 41 H 1.09004 * 109.47460 * 299.99449 * 11 9 7 42 42 H 1.08003 * 120.04009 * 0.02562 * 16 15 13 43 43 H 1.08003 * 119.83590 * 180.02562 * 17 16 15 44 44 H 1.07997 * 119.78999 * 180.02562 * 18 17 16 45 45 H 1.07998 * 119.96341 * 179.72327 * 19 18 17 46 46 H 0.96999 * 119.99709 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5257 3.4384 1.2996 8 8 1.7328 4.1028 0.3064 9 6 1.1276 4.1122 2.5875 10 1 1.8665 3.8899 3.3574 11 6 -0.2424 3.5953 3.0311 12 8 1.0604 5.5480 2.3818 13 6 1.3361 6.3316 3.4429 14 8 1.6252 5.8288 4.5107 15 6 1.2869 7.7985 3.3083 16 6 0.9544 8.3813 2.0826 17 6 0.9107 9.7534 1.9633 18 6 1.1946 10.5601 3.0540 19 6 1.5246 9.9990 4.2710 20 6 1.5738 8.6185 4.4103 21 8 1.8971 8.0658 5.6045 22 6 2.2730 8.9086 6.5873 23 1 2.2277 9.9761 6.4300 24 6 2.7179 8.4047 7.8006 25 7 2.7727 7.1047 7.9924 26 14 3.2394 9.5725 9.1622 27 1 2.0948 10.4428 9.5333 28 1 3.6699 8.7893 10.3481 29 1 4.3675 10.4137 8.6877 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9995 0.9052 0.7161 36 1 3.8533 0.9570 -1.0571 37 1 3.9283 2.4719 -0.1253 38 1 1.4872 1.5660 2.0463 39 1 -0.1915 2.5175 3.1856 40 1 -0.5305 4.0830 3.9623 41 1 -0.9814 3.8176 2.2612 42 1 0.7319 7.7570 1.2298 43 1 0.6531 10.2024 1.0154 44 1 1.1574 11.6345 2.9508 45 1 1.7489 10.6346 5.1149 46 1 3.0835 6.7523 8.8409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920413911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:37 Heat of formation + Delta-G solvation = -130.578919 kcal Electronic energy + Delta-G solvation = -28963.425217 eV Core-core repulsion = 24819.016405 eV Total energy + Delta-G solvation = -4144.408812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38779 -39.56674 -38.60062 -36.64194 -36.40256 -35.51740 -33.04021 -32.41859 -31.50775 -30.45981 -29.68330 -28.95577 -25.54362 -25.06275 -24.11727 -23.25161 -21.72794 -21.15153 -20.54699 -19.97614 -18.06997 -17.89574 -17.14556 -16.74672 -16.42217 -15.58050 -15.45882 -14.80848 -14.70132 -14.44415 -14.39512 -14.15410 -13.91774 -13.77764 -13.67998 -13.60909 -13.41597 -12.92907 -12.65136 -12.56308 -12.38670 -12.17290 -12.06356 -11.76466 -11.61508 -11.48759 -11.39029 -11.30327 -11.11605 -10.99038 -10.91612 -10.79897 -10.51486 -10.35240 -9.80349 -9.62218 -9.28120 -9.23161 -8.93410 -8.31722 -7.37886 -6.52268 -4.11802 1.59893 2.32416 2.57182 2.61327 3.08141 3.10533 3.12551 3.41911 3.54805 3.88127 4.37247 4.54810 4.63227 4.69825 4.75526 4.95763 5.01046 5.11941 5.14063 5.15502 5.26719 5.30439 5.32485 5.47679 5.57928 5.60330 5.61564 5.64175 5.72636 5.80371 5.83164 5.90489 6.03782 6.04572 6.11594 6.15251 6.34853 6.58190 6.66091 6.87476 6.96205 7.10140 7.23048 7.29136 7.34133 7.66788 7.86474 8.14630 8.66419 8.88111 9.57178 10.61494 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.002841 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.975046 B = 9853.349550 C =11122.397793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.142 3.858 4 H 0.089 0.911 5 C -0.166 4.166 6 N -0.724 5.724 7 C 0.522 3.478 8 O -0.517 6.517 9 C 0.070 3.930 10 H 0.110 0.890 11 C -0.162 4.162 12 O -0.337 6.337 13 C 0.499 3.501 14 O -0.477 6.477 15 C -0.215 4.215 16 C -0.013 4.013 17 C -0.234 4.234 18 C -0.042 4.042 19 C -0.240 4.240 20 C 0.192 3.808 21 O -0.126 6.126 22 C -0.403 4.403 23 H 0.096 0.904 24 C 0.045 3.955 25 N -0.833 5.833 26 Si 0.942 3.058 27 H -0.268 1.268 28 H -0.276 1.276 29 H -0.268 1.268 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.400 0.600 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.127 0.873 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.134 0.866 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -10.736 -12.323 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.038 3.962 4 H 0.107 0.893 5 C -0.225 4.225 6 N -0.379 5.379 7 C 0.307 3.693 8 O -0.391 6.391 9 C 0.011 3.989 10 H 0.128 0.872 11 C -0.220 4.220 12 O -0.255 6.255 13 C 0.344 3.656 14 O -0.363 6.363 15 C -0.218 4.218 16 C -0.031 4.031 17 C -0.253 4.253 18 C -0.061 4.061 19 C -0.259 4.259 20 C 0.133 3.867 21 O -0.024 6.024 22 C -0.478 4.478 23 H 0.113 0.887 24 C -0.163 4.163 25 N -0.464 5.464 26 Si 0.766 3.234 27 H -0.193 1.193 28 H -0.201 1.201 29 H -0.193 1.193 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.235 0.765 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.152 0.848 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.259 -10.857 -12.404 16.804 hybrid contribution 0.252 0.283 1.170 1.230 sum -3.007 -10.574 -11.234 15.718 Atomic orbital electron populations 1.21787 0.95243 1.01685 1.02436 1.21839 0.96634 0.95311 1.03095 1.21007 0.95009 0.92918 0.87309 0.89288 1.22205 0.95331 1.02967 1.01957 1.45981 1.71624 1.06467 1.13860 1.20307 0.76834 0.82282 0.89855 1.90716 1.48399 1.63836 1.36152 1.22224 1.00382 0.80585 0.95707 0.87227 1.22134 0.95186 1.01353 1.03328 1.86673 1.82260 1.16061 1.40497 1.21213 0.74666 0.88069 0.81613 1.90987 1.43450 1.74807 1.27057 1.17960 1.21838 0.87533 0.94487 1.21031 0.92253 0.94910 0.94910 1.20560 1.12495 0.93283 0.98942 1.20979 0.93910 0.98841 0.92355 1.21101 1.11454 0.94143 0.99204 1.19220 0.90782 0.90837 0.85869 1.84137 1.68101 1.35044 1.15085 1.21485 1.44805 0.89829 0.91722 0.88700 1.25404 0.96141 0.96789 0.97938 1.70104 1.40096 1.11350 1.24896 0.85768 0.79355 0.79120 0.79137 1.19286 1.20118 1.19279 0.92410 0.92520 0.92564 0.90360 0.91304 0.92367 0.91644 0.91822 0.76515 0.90808 0.90220 0.91193 0.85516 0.86910 0.86925 0.84804 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.80 37.16 0.36 -0.62 16 2 C -0.13 -0.81 5.47 -26.73 -0.15 -0.96 16 3 C 0.14 1.28 2.57 -67.93 -0.17 1.11 16 4 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 5 C -0.17 -1.51 9.48 37.16 0.35 -1.15 16 6 N -0.72 -7.40 4.42 -53.81 -0.24 -7.64 16 7 C 0.52 7.64 7.20 -10.98 -0.08 7.56 16 8 O -0.52 -9.51 16.16 -14.10 -0.23 -9.74 16 9 C 0.07 1.12 2.99 -27.88 -0.08 1.03 16 10 H 0.11 1.81 7.16 -51.93 -0.37 1.44 16 11 C -0.16 -2.06 9.45 37.16 0.35 -1.71 16 12 O -0.34 -6.69 8.67 -47.33 -0.41 -7.10 16 13 C 0.50 11.54 7.86 34.46 0.27 11.81 16 14 O -0.48 -12.59 14.43 -26.59 -0.38 -12.97 16 15 C -0.22 -4.94 5.89 -104.83 -0.62 -5.56 16 16 C -0.01 -0.24 9.61 -39.18 -0.38 -0.62 16 17 C -0.23 -4.08 10.02 -39.61 -0.40 -4.48 16 18 C -0.04 -0.76 10.03 -39.53 -0.40 -1.15 16 19 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 20 C 0.19 4.80 6.66 -38.57 -0.26 4.54 16 21 O -0.13 -3.65 7.84 -21.02 -0.16 -3.81 16 22 C -0.40 -11.19 9.49 30.91 0.29 -10.89 16 23 H 0.10 2.38 5.21 -52.49 -0.27 2.11 16 24 C 0.05 1.23 5.49 -17.51 -0.10 1.14 16 25 N -0.83 -24.46 13.67 55.48 0.76 -23.70 16 26 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 28 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 29 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 30 H 0.06 0.39 7.75 -51.93 -0.40 -0.01 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.40 3.07 8.02 -40.82 -0.33 2.75 16 39 H 0.07 0.67 7.56 -51.93 -0.39 0.27 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.13 2.23 7.61 -52.48 -0.40 1.83 16 43 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -35.06 391.47 -7.79 -42.84 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.64 Total: 6.61 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.35 Total: -5.46 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.52 Total: -31.34 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.19 Total: -33.62 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.06 -7.79 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920413911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.734 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds