Wall clock time and date at job start Tue Mar 31 2020 19:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47229 * 2 1 4 4 H 1.08995 * 109.47280 * 304.99944 * 3 2 1 5 5 C 1.53005 * 109.47072 * 184.99968 * 3 2 1 6 6 N 1.46501 * 109.47298 * 65.00033 * 3 2 1 7 7 C 1.34772 * 120.00239 * 205.00271 * 6 3 2 8 8 O 1.21281 * 119.99999 * 359.97438 * 7 6 3 9 9 C 1.50707 * 120.00168 * 180.02562 * 7 6 3 10 10 H 1.08999 * 109.47171 * 59.99203 * 9 7 6 11 11 C 1.52997 * 109.46503 * 299.99673 * 9 7 6 12 12 O 1.45202 * 109.47006 * 179.97438 * 9 7 6 13 13 C 1.34756 * 116.99730 * 209.99556 * 12 9 7 14 14 O 1.21514 * 120.00085 * 0.02562 * 13 12 9 15 15 C 1.47389 * 120.00029 * 180.02562 * 13 12 9 16 16 C 1.39733 * 120.20532 * 0.02562 * 15 13 12 17 17 C 1.37798 * 119.91851 * 180.02562 * 16 15 13 18 18 C 1.38598 * 120.33078 * 359.97438 * 17 16 15 19 19 C 1.38016 * 120.41232 * 0.02733 * 18 17 16 20 20 C 1.38839 * 120.07969 * 359.97438 * 19 18 17 21 21 O 1.35503 * 120.16664 * 180.02562 * 20 19 18 22 22 C 1.34818 * 116.99847 * 354.41394 * 21 20 19 23 23 H 1.07993 * 120.00260 * 5.07057 * 22 21 20 24 24 C 1.38709 * 119.99807 * 185.07457 * 22 21 20 25 25 N 1.31518 * 119.99862 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99750 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47141 * 60.00030 * 26 24 22 28 28 H 1.48497 * 109.46870 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47050 * 299.99669 * 26 24 22 30 30 H 1.08997 * 109.46746 * 299.99924 * 1 2 3 31 31 H 1.09000 * 109.46982 * 59.99994 * 1 2 3 32 32 H 1.08995 * 109.46796 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46746 * 240.00076 * 2 1 3 34 34 H 1.09000 * 109.46982 * 120.00006 * 2 1 3 35 35 H 1.08995 * 109.47049 * 300.00117 * 5 3 2 36 36 H 1.08998 * 109.47007 * 60.00598 * 5 3 2 37 37 H 1.09001 * 109.46712 * 180.02562 * 5 3 2 38 38 H 0.97005 * 119.99768 * 24.99957 * 6 3 2 39 39 H 1.09004 * 109.47728 * 60.00348 * 11 9 7 40 40 H 1.09000 * 109.46642 * 180.02562 * 11 9 7 41 41 H 1.09004 * 109.47460 * 299.99449 * 11 9 7 42 42 H 1.08003 * 120.04009 * 0.02562 * 16 15 13 43 43 H 1.08003 * 119.83590 * 180.02562 * 17 16 15 44 44 H 1.07997 * 119.78999 * 180.02562 * 18 17 16 45 45 H 1.07998 * 119.96341 * 179.72327 * 19 18 17 46 46 H 0.96999 * 119.99709 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5257 3.4384 1.2996 8 8 1.7328 4.1028 0.3064 9 6 1.1276 4.1122 2.5875 10 1 1.8665 3.8899 3.3574 11 6 -0.2424 3.5953 3.0311 12 8 1.0604 5.5480 2.3818 13 6 1.3361 6.3316 3.4429 14 8 1.6252 5.8288 4.5107 15 6 1.2869 7.7985 3.3083 16 6 0.9544 8.3813 2.0826 17 6 0.9107 9.7534 1.9633 18 6 1.1946 10.5601 3.0540 19 6 1.5246 9.9990 4.2710 20 6 1.5738 8.6185 4.4103 21 8 1.8971 8.0658 5.6045 22 6 2.2730 8.9086 6.5873 23 1 2.2277 9.9761 6.4300 24 6 2.7179 8.4047 7.8006 25 7 2.7727 7.1047 7.9924 26 14 3.2394 9.5725 9.1622 27 1 2.0948 10.4428 9.5333 28 1 3.6699 8.7893 10.3481 29 1 4.3675 10.4137 8.6877 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9995 0.9052 0.7161 36 1 3.8533 0.9570 -1.0571 37 1 3.9283 2.4719 -0.1253 38 1 1.4872 1.5660 2.0463 39 1 -0.1915 2.5175 3.1856 40 1 -0.5305 4.0830 3.9623 41 1 -0.9814 3.8176 2.2612 42 1 0.7319 7.7570 1.2298 43 1 0.6531 10.2024 1.0154 44 1 1.1574 11.6345 2.9508 45 1 1.7489 10.6346 5.1149 46 1 3.0835 6.7523 8.8409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920413911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:36 Heat of formation + Delta-G solvation = -152.385394 kcal Electronic energy + Delta-G solvation = -28964.370817 eV Core-core repulsion = 24819.016405 eV Total energy + Delta-G solvation = -4145.354412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88045 -41.04482 -40.24537 -38.16210 -37.70665 -37.10026 -34.37377 -34.16005 -32.66066 -31.85436 -30.66308 -30.51066 -27.47866 -26.34277 -25.20391 -24.41140 -23.35215 -22.25844 -21.68176 -21.42010 -19.91989 -19.50308 -18.54615 -18.35063 -17.59397 -17.10565 -16.95613 -16.37272 -16.17559 -16.01951 -15.68625 -15.51116 -15.34374 -14.98256 -14.86517 -14.66350 -14.45308 -14.34596 -14.15622 -13.96255 -13.57627 -13.44389 -13.27055 -13.04036 -12.77527 -12.71272 -12.68124 -12.53540 -12.40473 -12.27996 -12.15810 -11.95302 -11.90517 -11.65187 -11.63209 -11.14328 -10.86013 -10.84314 -10.22156 -9.95387 -9.14120 -8.48462 -6.19295 -0.08389 0.66637 1.27497 1.34044 1.37695 1.46585 1.51387 1.69023 2.14442 2.27247 2.80717 3.13049 3.34539 3.46646 3.71468 3.77001 3.85070 3.88688 4.06600 4.07742 4.17931 4.22982 4.45277 4.48474 4.50087 4.58313 4.60631 4.63316 4.74621 4.82253 4.90490 4.97498 4.99778 5.03888 5.10752 5.12594 5.16526 5.24984 5.27752 5.43185 5.45233 5.48937 5.56971 5.64098 5.92720 6.09411 6.35779 6.87769 6.92486 7.05679 7.69843 8.71265 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.002841 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.975046 B = 9853.349550 C =11122.397793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C 0.138 3.862 4 H 0.072 0.928 5 C -0.164 4.164 6 N -0.702 5.702 7 C 0.528 3.472 8 O -0.559 6.559 9 C 0.059 3.941 10 H 0.098 0.902 11 C -0.154 4.154 12 O -0.338 6.338 13 C 0.500 3.500 14 O -0.521 6.521 15 C -0.238 4.238 16 C -0.015 4.015 17 C -0.205 4.205 18 C -0.025 4.025 19 C -0.254 4.254 20 C 0.161 3.839 21 O -0.184 6.184 22 C -0.430 4.430 23 H 0.112 0.888 24 C -0.018 4.018 25 N -0.901 5.901 26 Si 1.022 2.978 27 H -0.253 1.253 28 H -0.273 1.273 29 H -0.255 1.255 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.030 0.970 38 H 0.415 0.585 39 H 0.115 0.885 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.146 0.854 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.135 0.865 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 -9.952 -14.559 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C 0.035 3.965 4 H 0.090 0.910 5 C -0.222 4.222 6 N -0.357 5.357 7 C 0.313 3.687 8 O -0.437 6.437 9 C 0.000 4.000 10 H 0.116 0.884 11 C -0.212 4.212 12 O -0.255 6.255 13 C 0.348 3.652 14 O -0.411 6.411 15 C -0.241 4.241 16 C -0.033 4.033 17 C -0.223 4.223 18 C -0.043 4.043 19 C -0.273 4.273 20 C 0.105 3.895 21 O -0.086 6.086 22 C -0.505 4.505 23 H 0.129 0.871 24 C -0.218 4.218 25 N -0.536 5.536 26 Si 0.841 3.159 27 H -0.177 1.177 28 H -0.198 1.198 29 H -0.179 1.179 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.253 0.747 39 H 0.134 0.866 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.163 0.837 43 H 0.181 0.819 44 H 0.181 0.819 45 H 0.153 0.847 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.038 -10.094 -14.707 18.289 hybrid contribution 0.371 0.025 1.420 1.468 sum -3.667 -10.069 -13.287 17.069 Atomic orbital electron populations 1.21808 0.95273 1.02412 1.01837 1.21805 0.96478 0.92957 1.04657 1.21194 0.95113 0.94449 0.85754 0.91026 1.22190 0.95138 1.01272 1.03628 1.45882 1.69658 1.04909 1.15217 1.20053 0.76641 0.83493 0.88503 1.90695 1.50748 1.65044 1.37194 1.22637 1.02171 0.78628 0.96571 0.88424 1.22133 0.93212 1.03611 1.02211 1.86619 1.81536 1.18236 1.39077 1.21424 0.73580 0.88768 0.81447 1.90966 1.45518 1.75733 1.28859 1.18411 1.22381 0.87627 0.95657 1.21344 0.91695 0.96457 0.93797 1.21195 1.08319 0.92155 1.00640 1.21534 0.90742 1.01486 0.90498 1.21312 1.12215 0.92660 1.01153 1.19903 0.91069 0.92889 0.85636 1.84138 1.71382 1.36393 1.16673 1.22063 1.45461 0.90695 0.92269 0.87128 1.26764 0.95799 0.98665 1.00552 1.70283 1.43442 1.13988 1.25864 0.84613 0.79497 0.76663 0.75174 1.17671 1.19770 1.17879 0.92814 0.93379 0.91186 0.88706 0.89796 0.91295 0.89529 0.95076 0.74732 0.86620 0.92535 0.90258 0.83674 0.81935 0.81941 0.84743 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.80 71.98 0.71 -0.92 16 2 C -0.12 -1.18 5.47 30.59 0.17 -1.01 16 3 C 0.14 2.33 2.57 44.99 0.12 2.45 16 4 H 0.07 1.51 7.58 -2.39 -0.02 1.49 16 5 C -0.16 -2.81 9.48 71.98 0.68 -2.13 16 6 N -0.70 -13.74 4.42 -442.54 -1.96 -15.69 16 7 C 0.53 15.64 7.20 87.66 0.63 16.27 16 8 O -0.56 -21.00 16.16 15.77 0.25 -20.74 16 9 C 0.06 1.93 2.99 29.85 0.09 2.02 16 10 H 0.10 3.46 7.16 -2.39 -0.02 3.45 16 11 C -0.15 -3.93 9.45 71.98 0.68 -3.25 16 12 O -0.34 -13.94 8.67 -50.28 -0.44 -14.37 16 13 C 0.50 24.54 7.86 70.23 0.55 25.09 16 14 O -0.52 -29.83 14.43 26.78 0.39 -29.44 16 15 C -0.24 -11.22 5.89 -20.00 -0.12 -11.34 16 16 C -0.01 -0.54 9.61 22.53 0.22 -0.33 16 17 C -0.20 -6.19 10.02 22.25 0.22 -5.97 16 18 C -0.02 -0.78 10.03 22.30 0.22 -0.56 16 19 C -0.25 -10.76 9.16 22.36 0.20 -10.55 16 20 C 0.16 8.32 6.66 22.92 0.15 8.47 16 21 O -0.18 -11.44 7.84 0.99 0.01 -11.43 16 22 C -0.43 -25.19 9.49 67.93 0.64 -24.54 16 23 H 0.11 5.75 5.21 -2.91 -0.02 5.74 16 24 C -0.02 -1.01 5.49 84.85 0.47 -0.55 16 25 N -0.90 -56.74 13.67 21.62 0.30 -56.44 16 26 Si 1.02 42.62 29.55 68.60 2.03 44.65 16 27 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 29 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 30 H 0.05 0.60 7.75 -2.39 -0.02 0.58 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.42 5.67 8.02 -92.70 -0.74 4.93 16 39 H 0.12 1.91 7.56 -2.39 -0.02 1.89 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.15 4.79 7.61 -2.91 -0.02 4.77 16 43 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 44 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 45 H 0.13 5.57 5.64 -2.91 -0.02 5.56 16 46 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -86.20 391.47 6.48 -79.72 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.26 Total: 30.61 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.64 Total: -6.86 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -1.66 Total: -72.13 kcal Atomic # 8 Polarization: -76.20 SS G_CDS: 0.21 Total: -75.98 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -86.20 6.48 -79.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920413911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.666 kcal (2) G-P(sol) polarization free energy of solvation -86.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds