Wall clock time and date at job start Tue Mar 31 2020 18:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 C 1.53001 * 109.47350 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46816 * 54.52562 * 4 3 2 6 6 O 1.42903 * 109.46963 * 294.52649 * 4 3 2 7 7 C 1.50698 * 109.46930 * 174.52588 * 4 3 2 8 8 O 1.21289 * 120.00036 * 101.46443 * 7 4 3 9 9 N 1.34782 * 119.99982 * 281.46620 * 7 4 3 10 10 C 1.46496 * 119.99795 * 6.13121 * 9 7 4 11 11 C 1.50694 * 109.47427 * 265.16838 * 10 9 7 12 12 H 1.08003 * 120.00474 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00193 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99874 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00059 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46951 * 60.00171 * 15 13 11 17 17 H 1.48496 * 109.46982 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47107 * 299.99815 * 15 13 11 19 19 C 1.40095 * 119.99732 * 185.86486 * 9 7 4 20 20 C 1.38847 * 120.01424 * 188.18893 * 19 9 7 21 21 C 1.38132 * 120.03438 * 179.80516 * 20 19 9 22 22 C 1.38706 * 120.16312 * 0.51814 * 21 20 19 23 23 C 1.38993 * 119.93255 * 359.65146 * 22 21 20 24 24 C 1.38648 * 119.88476 * 0.12702 * 23 22 21 25 25 O 1.36118 * 120.78627 * 180.27383 * 23 22 21 26 26 C 1.43174 * 116.72931 * 342.80020 * 25 23 22 27 27 C 1.53476 * 108.24519 * 46.18760 * 26 25 23 28 28 O 1.36200 * 119.32108 * 179.56450 * 22 21 20 29 29 H 1.08999 * 109.47195 * 299.99789 * 1 2 3 30 30 H 1.08999 * 109.47190 * 59.99794 * 1 2 3 31 31 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46768 * 240.00308 * 2 1 3 33 33 H 1.08999 * 109.47190 * 120.00206 * 2 1 3 34 34 H 1.08999 * 109.46799 * 59.99968 * 3 2 1 35 35 H 1.09000 * 109.47182 * 300.00791 * 3 2 1 36 36 H 0.96704 * 113.99804 * 299.99516 * 6 4 3 37 37 H 1.09004 * 109.47089 * 25.17052 * 10 9 7 38 38 H 1.09007 * 109.47044 * 145.16597 * 10 9 7 39 39 H 0.97001 * 120.00079 * 180.02562 * 14 13 11 40 40 H 1.08003 * 119.98101 * 0.06754 * 20 19 9 41 41 H 1.08002 * 119.91448 * 180.27926 * 21 20 19 42 42 H 1.08002 * 119.98915 * 179.97438 * 24 23 22 43 43 H 1.08990 * 109.70823 * 165.87743 * 26 25 23 44 44 H 1.08997 * 109.70436 * 286.49937 * 26 25 23 45 45 H 1.09002 * 109.70970 * 59.91812 * 27 26 25 46 46 H 1.08998 * 109.70665 * 180.55111 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9330 0.8462 -0.8378 6 8 4.0469 0.8830 1.2248 7 6 4.0723 2.8568 -0.1362 8 8 4.4717 3.4548 0.8406 9 7 4.0776 3.4573 -1.3428 10 6 3.4728 2.7877 -2.4969 11 6 4.5371 2.0419 -3.2597 12 1 5.5617 2.0640 -2.9187 13 6 4.2030 1.3311 -4.3930 14 7 2.9553 1.3037 -4.8080 15 14 5.5225 0.4072 -5.3389 16 1 6.1498 -0.6055 -4.4523 17 1 4.9093 -0.2716 -6.5087 18 1 6.5572 1.3638 -5.8075 19 6 4.6567 4.7243 -1.4921 20 6 4.5145 5.4164 -2.6874 21 6 5.0818 6.6673 -2.8336 22 6 5.8037 7.2313 -1.7921 23 6 5.9507 6.5393 -0.5956 24 6 5.3772 5.2857 -0.4477 25 8 6.6508 7.0787 0.4396 26 6 7.5227 8.1706 0.1278 27 6 6.7590 9.1544 -0.7691 28 8 6.3633 8.4619 -1.9581 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.7619 1.3639 2.0139 37 1 2.7131 2.0858 -2.1527 38 1 3.0124 3.5309 -3.1480 39 1 2.7202 0.8034 -5.6050 40 1 3.9565 4.9782 -3.5017 41 1 4.9662 7.2059 -3.7626 42 1 5.4907 4.7464 0.4811 43 1 7.8276 8.6715 1.0466 44 1 8.4022 7.7999 -0.3987 45 1 5.8757 9.5197 -0.2452 46 1 7.4056 9.9923 -1.0295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931850307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:27 Heat of formation + Delta-G solvation = -142.771384 kcal Electronic energy + Delta-G solvation = -30046.153205 eV Core-core repulsion = 25901.215688 eV Total energy + Delta-G solvation = -4144.937517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38237 -41.61640 -39.08357 -38.19071 -37.73116 -36.78268 -35.03462 -34.57713 -31.95185 -31.76935 -30.32884 -29.35366 -28.76221 -26.03110 -25.68818 -24.55983 -23.93555 -22.21894 -22.04352 -20.81596 -19.50958 -18.98646 -18.82789 -18.35319 -17.75973 -17.69234 -16.84143 -16.61954 -16.52659 -16.36440 -15.87179 -15.79625 -15.43229 -15.24941 -15.00161 -14.94519 -14.46605 -14.30750 -14.16704 -14.11034 -13.69689 -13.55146 -13.16065 -13.03735 -12.87573 -12.74059 -12.67931 -12.49995 -12.43832 -12.16576 -12.00935 -11.91513 -11.78659 -11.64239 -11.44865 -11.35742 -10.62162 -10.54552 -10.19562 -9.48741 -8.57971 -8.20289 -6.36777 0.18601 0.31197 1.42282 1.42481 1.46492 1.52492 1.83834 2.13679 2.36675 2.41155 2.78032 3.07642 3.23169 3.36761 3.46743 3.73927 3.86437 3.97191 4.00816 4.09516 4.15485 4.25240 4.26949 4.38840 4.43937 4.49866 4.60622 4.61991 4.65746 4.74626 4.85599 4.89863 5.00736 5.07262 5.13611 5.16823 5.27110 5.29639 5.37384 5.43336 5.50389 5.65974 5.91387 5.93750 5.96222 6.34207 6.47429 6.60522 6.71551 7.00794 7.33939 8.81872 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010001 B = 0.004292 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.109042 B = 6521.454951 C = 8342.613602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.139 4.139 4 C 0.106 3.894 5 H 0.120 0.880 6 O -0.544 6.544 7 C 0.483 3.517 8 O -0.554 6.554 9 N -0.532 5.532 10 C 0.232 3.768 11 C -0.551 4.551 12 H 0.045 0.955 13 C 0.037 3.963 14 N -0.907 5.907 15 Si 0.947 3.053 16 H -0.274 1.274 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.154 3.846 20 C -0.146 4.146 21 C -0.089 4.089 22 C 0.014 3.986 23 C 0.064 3.936 24 C -0.185 4.185 25 O -0.325 6.325 26 C 0.011 3.989 27 C 0.016 3.984 28 O -0.319 6.319 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.389 0.611 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.271 0.729 40 H 0.139 0.861 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.156 0.844 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 9.134 7.925 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.177 4.177 4 C 0.043 3.957 5 H 0.138 0.862 6 O -0.351 6.351 7 C 0.274 3.726 8 O -0.435 6.435 9 N -0.253 5.253 10 C 0.113 3.887 11 C -0.589 4.589 12 H 0.064 0.936 13 C -0.165 4.165 14 N -0.545 5.545 15 Si 0.773 3.227 16 H -0.199 1.199 17 H -0.202 1.202 18 H -0.203 1.203 19 C 0.059 3.941 20 C -0.166 4.166 21 C -0.108 4.108 22 C -0.032 4.032 23 C 0.018 3.982 24 C -0.206 4.206 25 O -0.240 6.240 26 C -0.063 4.063 27 C -0.058 4.058 28 O -0.234 6.234 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.239 0.761 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.173 0.827 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.159 8.887 7.914 11.956 hybrid contribution 0.581 -0.034 -0.496 0.765 sum 1.741 8.853 7.418 11.680 Atomic orbital electron populations 1.21738 0.94431 1.02342 1.01944 1.21393 0.96772 0.94497 1.02426 1.22267 0.91794 0.99999 1.03602 1.21833 0.95640 0.88883 0.89315 0.86212 1.86567 1.77790 1.55231 1.15475 1.22244 0.77998 0.90448 0.81905 1.90346 1.48841 1.65625 1.38717 1.46028 1.52890 1.15308 1.11025 1.19700 0.93921 0.92838 0.82226 1.21418 0.94573 1.31923 1.11016 0.93642 1.25421 0.97153 0.96595 0.97328 1.69949 1.17869 1.41826 1.24838 0.85774 0.79603 0.78932 0.78423 1.19907 1.20172 1.20283 1.17847 0.95545 0.86076 0.94669 1.20847 1.03861 0.94854 0.97067 1.20384 0.96610 0.94915 0.98875 1.18849 1.01955 0.87336 0.95019 1.18702 0.97712 0.93520 0.88245 1.21460 1.01943 0.94448 1.02700 1.86270 1.56266 1.49783 1.31699 1.24014 0.91632 0.86701 1.03973 1.23936 1.01091 0.95317 0.85497 1.86263 1.76354 1.27095 1.33727 0.91772 0.93308 0.91618 0.92905 0.90689 0.89946 0.90761 0.76072 0.91989 0.94430 0.92011 0.84347 0.82486 0.81797 0.82661 0.90550 0.90358 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.63 16 2 C -0.11 -3.06 5.83 30.59 0.18 -2.88 16 3 C -0.14 -4.19 4.52 30.59 0.14 -4.05 16 4 C 0.11 3.80 2.54 29.85 0.08 3.88 16 5 H 0.12 4.88 7.15 -2.39 -0.02 4.86 16 6 O -0.54 -18.05 12.67 -130.63 -1.65 -19.70 16 7 C 0.48 19.99 6.86 87.66 0.60 20.60 16 8 O -0.55 -24.09 12.85 15.29 0.20 -23.89 16 9 N -0.53 -23.13 2.69 -635.27 -1.71 -24.84 16 10 C 0.23 10.63 4.24 85.63 0.36 10.99 16 11 C -0.55 -27.95 8.98 25.60 0.23 -27.72 16 12 H 0.05 2.43 7.81 -2.91 -0.02 2.41 16 13 C 0.04 1.88 5.46 84.66 0.46 2.34 16 14 N -0.91 -46.97 13.29 21.45 0.28 -46.68 16 15 Si 0.95 41.13 29.54 68.60 2.03 43.16 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 C 0.15 6.64 6.47 38.09 0.25 6.88 16 20 C -0.15 -5.76 9.26 22.39 0.21 -5.55 16 21 C -0.09 -3.06 9.95 22.36 0.22 -2.84 16 22 C 0.01 0.48 6.49 22.56 0.15 0.62 16 23 C 0.06 2.38 6.49 22.55 0.15 2.53 16 24 C -0.19 -7.83 8.88 22.49 0.20 -7.63 16 25 O -0.33 -10.56 10.42 -82.66 -0.86 -11.42 16 26 C 0.01 0.23 7.26 72.14 0.52 0.75 16 27 C 0.02 0.30 7.26 72.14 0.52 0.83 16 28 O -0.32 -9.05 10.42 -83.61 -0.87 -9.92 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.07 1.88 7.84 -2.39 -0.02 1.86 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.47 5.90 -2.39 -0.01 2.46 16 36 H 0.39 10.46 8.66 -74.05 -0.64 9.82 16 37 H 0.06 2.79 4.39 -2.38 -0.01 2.78 16 38 H 0.04 1.80 6.17 -2.38 -0.01 1.78 16 39 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 40 H 0.14 5.61 6.09 -2.91 -0.02 5.59 16 41 H 0.16 4.51 8.06 -2.91 -0.02 4.48 16 42 H 0.17 7.49 4.75 -42.90 -0.20 7.29 16 43 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -63.46 372.01 2.58 -60.88 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.19 Total: 36.31 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.98 Total: -3.89 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.42 Total: -71.53 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -3.19 Total: -64.93 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -63.46 2.58 -60.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931850307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.892 kcal (2) G-P(sol) polarization free energy of solvation -63.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds