Wall clock time and date at job start Tue Mar 31 2020 18:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47440 * 2 1 4 4 C 1.53007 * 109.46856 * 240.00221 * 2 1 3 5 5 C 1.50704 * 109.47305 * 120.00556 * 2 1 3 6 6 N 1.28649 * 124.72061 * 60.23880 * 5 2 1 7 7 C 1.33559 * 115.76435 * 180.18795 * 6 5 2 8 8 C 1.47266 * 123.13986 * 179.83164 * 7 6 5 9 9 O 1.21628 * 119.99655 * 179.73720 * 8 7 6 10 10 N 1.34777 * 120.00110 * 359.73213 * 8 7 6 11 11 C 1.46497 * 119.99971 * 180.02562 * 10 8 7 12 12 H 1.08998 * 115.51472 * 350.41099 * 11 10 8 13 13 C 1.53000 * 117.43937 * 205.00176 * 11 10 8 14 14 H 1.08998 * 119.54230 * 4.15343 * 13 11 10 15 15 C 1.54393 * 118.12081 * 159.25319 * 13 11 10 16 16 N 1.51835 * 102.86455 * 88.01977 * 15 13 11 17 17 C 1.36934 * 127.60929 * 140.54838 * 16 15 13 18 18 H 1.07998 * 119.99462 * 194.12218 * 17 16 15 19 19 C 1.38806 * 120.00292 * 14.12360 * 17 16 15 20 20 N 1.31622 * 119.99988 * 8.84322 * 19 17 16 21 21 Si 1.86796 * 120.00137 * 188.84843 * 19 17 16 22 22 H 1.48506 * 109.47458 * 93.97614 * 21 19 17 23 23 H 1.48500 * 109.47402 * 213.97329 * 21 19 17 24 24 H 1.48500 * 109.47186 * 333.97637 * 21 19 17 25 25 C 1.48146 * 104.54936 * 320.26480 * 16 15 13 26 26 C 1.52993 * 117.40813 * 135.77345 * 11 10 8 27 27 H 1.09000 * 119.54429 * 355.89333 * 26 11 10 28 28 C 1.35210 * 113.71484 * 359.56441 * 7 6 5 29 29 S 1.70769 * 124.71872 * 239.97482 * 5 2 1 30 30 H 1.08999 * 109.46856 * 299.99414 * 1 2 3 31 31 H 1.08998 * 109.47604 * 59.99579 * 1 2 3 32 32 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47637 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47488 * 300.00862 * 3 2 1 35 35 H 1.09003 * 109.47078 * 60.00259 * 3 2 1 36 36 H 1.08997 * 109.47372 * 299.99766 * 4 2 1 37 37 H 1.08995 * 109.47132 * 60.00181 * 4 2 1 38 38 H 1.08999 * 109.46738 * 179.97438 * 4 2 1 39 39 H 0.96996 * 119.99648 * 359.97438 * 10 8 7 40 40 H 1.08997 * 110.40350 * 207.98776 * 15 13 11 41 41 H 1.09000 * 110.40856 * 330.42456 * 15 13 11 42 42 H 0.97007 * 119.99966 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.41245 * 281.08099 * 25 16 15 44 44 H 1.09005 * 110.40531 * 158.64523 * 25 16 15 45 45 H 1.08003 * 125.58271 * 180.19137 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7818 -1.9384 1.5211 7 6 2.3156 -2.3858 2.6607 8 6 2.1299 -3.7620 3.1510 9 8 2.6467 -4.1103 4.1955 10 7 1.3871 -4.6353 2.4425 11 6 1.2018 -6.0041 2.9306 12 1 1.8227 -6.2876 3.7804 13 6 0.8879 -7.0855 1.8948 14 1 0.8788 -6.8287 0.8356 15 6 1.1646 -8.5569 2.2722 16 7 -0.1299 -8.9835 2.9412 17 6 -0.7736 -10.1865 2.8250 18 1 -1.7936 -10.2881 3.1653 19 6 -0.1153 -11.2752 2.2701 20 7 1.1743 -11.2051 2.0161 21 14 -1.0596 -12.8399 1.8834 22 1 -1.5067 -12.8113 0.4675 23 1 -0.1793 -14.0159 2.1007 24 1 -2.2436 -12.9365 2.7745 25 6 -0.5344 -7.8107 3.7509 26 6 -0.2090 -6.5918 2.8609 27 1 -1.0352 -5.9672 2.5213 28 6 3.0473 -1.4589 3.3192 29 16 3.0188 0.0004 2.4295 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2494 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 0.9746 -4.3573 1.6098 40 1 1.3811 -9.1438 1.3796 41 1 1.9921 -8.6188 2.9789 42 1 1.6342 -11.9658 1.6279 43 1 0.0411 -7.7705 4.6757 44 1 -1.6020 -7.8487 3.9679 45 1 3.5645 -1.6148 4.2544 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962047838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:00 Heat of formation + Delta-G solvation = 59.379403 kcal Electronic energy + Delta-G solvation = -25887.806849 eV Core-core repulsion = 22226.680870 eV Total energy + Delta-G solvation = -3661.125979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74043 -39.31424 -38.12534 -36.87404 -34.35563 -32.56989 -30.47114 -30.06918 -27.90603 -27.66099 -27.11002 -26.45480 -25.35577 -23.48005 -21.45528 -20.44587 -19.93368 -19.71563 -19.17471 -18.42908 -16.94895 -16.64872 -16.09939 -15.73523 -15.61820 -14.70071 -14.64339 -14.58370 -14.40577 -13.73399 -13.72454 -13.53953 -13.16768 -12.74717 -12.69680 -12.61099 -12.16673 -12.13952 -12.11367 -11.97909 -11.53490 -11.46296 -11.43616 -11.39867 -10.99058 -10.81290 -10.42394 -10.19387 -10.14600 -10.08852 -10.02018 -9.90315 -9.66794 -9.20178 -9.17505 -8.72103 -8.29645 -6.85010 -5.75737 -3.08906 0.26793 0.92579 1.33560 1.78680 3.15196 3.27413 3.40777 3.45866 3.48113 3.55993 4.24569 4.35808 4.42754 4.46618 4.49883 4.78826 4.95002 5.03713 5.09029 5.17031 5.18875 5.32897 5.38343 5.40695 5.41815 5.44270 5.47964 5.56867 5.60302 5.69456 5.82379 5.88446 5.91521 5.93167 6.17025 6.24487 6.55947 6.71528 6.80169 6.92634 7.15127 7.34336 7.54256 7.64501 7.72645 8.16198 8.23811 9.09450 9.75891 10.52641 11.39197 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002222 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.842003 B =12596.446538 C =13254.121741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.012 3.988 3 C -0.155 4.155 4 C -0.136 4.136 5 C 0.038 3.962 6 N -0.440 5.440 7 C 0.016 3.984 8 C 0.594 3.406 9 O -0.534 6.534 10 N -0.677 5.677 11 C 0.093 3.907 12 H 0.133 0.867 13 C -0.176 4.176 14 H 0.102 0.898 15 C 0.187 3.813 16 N -0.599 5.599 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.160 3.840 26 C -0.181 4.181 27 H 0.103 0.897 28 C -0.231 4.231 29 S 0.207 5.793 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.408 0.592 40 H 0.095 0.905 41 H 0.030 0.970 42 H 0.254 0.746 43 H 0.027 0.973 44 H 0.052 0.948 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 29.551 -5.105 30.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 C -0.213 4.213 4 C -0.195 4.195 5 C -0.242 4.242 6 N -0.154 5.154 7 C -0.119 4.119 8 C 0.378 3.622 9 O -0.411 6.411 10 N -0.325 5.325 11 C -0.013 4.013 12 H 0.150 0.850 13 C -0.197 4.197 14 H 0.120 0.880 15 C 0.062 3.938 16 N -0.324 5.324 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.564 5.564 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.033 3.967 26 C -0.203 4.203 27 H 0.121 0.879 28 C -0.373 4.373 29 S 0.466 5.534 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.243 0.757 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.537 29.637 -4.602 30.200 hybrid contribution -0.766 -1.584 -0.298 1.784 sum 2.770 28.054 -4.899 28.613 Atomic orbital electron populations 1.21858 0.92036 1.03369 1.02180 1.19248 0.96772 0.93872 0.89310 1.22046 1.01708 0.94229 1.03365 1.21862 1.01216 1.01272 0.95121 1.27191 1.01615 0.93557 1.01876 1.66804 1.21525 1.12233 1.14881 1.20442 1.01639 0.97048 0.92746 1.17013 0.78874 0.82680 0.83657 1.90822 1.49338 1.77842 1.23063 1.45191 1.50716 1.10902 1.25683 1.21934 0.98948 0.79658 1.00769 0.84958 1.24607 1.03208 0.96547 0.95359 0.87969 1.21737 0.87742 0.85994 0.98307 1.46065 1.25103 1.11036 1.50176 1.19033 0.94879 0.85246 1.35967 0.90522 1.24862 0.95566 0.97651 1.02408 1.69885 1.07161 1.30717 1.48651 0.86091 0.78677 0.82732 0.78181 1.21622 1.21714 1.20560 1.21054 0.97984 0.85514 0.92165 1.24392 0.91434 1.00550 1.03889 0.87860 1.26662 1.05833 0.97609 1.07231 1.82793 1.45035 1.12226 1.13374 0.92450 0.91474 0.91253 0.91742 0.90459 0.91760 0.91217 0.91477 0.92425 0.75708 0.88699 0.95207 0.93609 0.95546 0.92954 0.79365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.45 37.16 0.31 -0.56 16 2 C 0.01 0.08 0.99 -155.66 -0.15 -0.08 16 3 C -0.16 -0.68 7.53 37.15 0.28 -0.40 16 4 C -0.14 -0.89 8.45 37.16 0.31 -0.58 16 5 C 0.04 0.34 5.74 -13.61 -0.08 0.26 16 6 N -0.44 -5.15 10.10 -8.51 -0.09 -5.23 16 7 C 0.02 0.21 6.70 -84.52 -0.57 -0.35 16 8 C 0.59 9.61 7.80 -12.59 -0.10 9.51 16 9 O -0.53 -10.20 16.28 5.25 0.09 -10.11 16 10 N -0.68 -10.58 5.56 -54.94 -0.31 -10.88 16 11 C 0.09 1.67 5.97 -67.94 -0.41 1.26 16 12 H 0.13 2.64 7.40 -51.93 -0.38 2.25 16 13 C -0.18 -3.45 6.96 -89.22 -0.62 -4.08 16 14 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 15 C 0.19 4.57 5.91 -0.29 0.00 4.57 16 16 N -0.60 -15.66 3.45 -165.69 -0.57 -16.23 16 17 C -0.22 -6.30 10.37 -15.06 -0.16 -6.46 16 18 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 19 C -0.01 -0.23 5.43 -17.43 -0.09 -0.33 16 20 N -0.92 -27.17 10.79 55.49 0.60 -26.57 16 21 Si 0.91 22.21 29.56 -169.99 -5.03 17.18 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.16 3.47 7.05 -2.40 -0.02 3.46 16 26 C -0.18 -3.39 7.06 -89.22 -0.63 -4.02 16 27 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 28 C -0.23 -2.50 10.62 29.65 0.31 -2.19 16 29 S 0.21 1.56 21.28 -107.50 -2.29 -0.73 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.26 7.91 -51.93 -0.41 -0.15 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.26 7.91 -51.93 -0.41 -0.16 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.41 5.67 8.35 -40.82 -0.34 5.33 16 40 H 0.09 2.55 6.57 -51.93 -0.34 2.21 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.19 1.88 8.03 -52.48 -0.42 1.46 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -32.69 383.38 -10.34 -43.04 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.93 Total: 3.72 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.60 Total: 0.04 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.36 Total: -58.92 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.29 Total: -0.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.69 -10.34 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962047838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.417 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds