Wall clock time and date at job start Tue Mar 31 2020 18:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47440 * 2 1 4 4 C 1.53007 * 109.46856 * 240.00221 * 2 1 3 5 5 C 1.50704 * 109.47305 * 120.00556 * 2 1 3 6 6 N 1.28649 * 124.72061 * 60.23880 * 5 2 1 7 7 C 1.33559 * 115.76435 * 180.18795 * 6 5 2 8 8 C 1.47266 * 123.13986 * 179.83164 * 7 6 5 9 9 O 1.21628 * 119.99655 * 179.73720 * 8 7 6 10 10 N 1.34777 * 120.00110 * 359.73213 * 8 7 6 11 11 C 1.46497 * 119.99971 * 180.02562 * 10 8 7 12 12 H 1.08998 * 115.51472 * 350.41099 * 11 10 8 13 13 C 1.53000 * 117.43937 * 205.00176 * 11 10 8 14 14 H 1.08998 * 119.54230 * 4.15343 * 13 11 10 15 15 C 1.54393 * 118.12081 * 159.25319 * 13 11 10 16 16 N 1.51835 * 102.86455 * 88.01977 * 15 13 11 17 17 C 1.36934 * 127.60929 * 140.54838 * 16 15 13 18 18 H 1.07998 * 119.99462 * 194.12218 * 17 16 15 19 19 C 1.38806 * 120.00292 * 14.12360 * 17 16 15 20 20 N 1.31622 * 119.99988 * 8.84322 * 19 17 16 21 21 Si 1.86796 * 120.00137 * 188.84843 * 19 17 16 22 22 H 1.48506 * 109.47458 * 93.97614 * 21 19 17 23 23 H 1.48500 * 109.47402 * 213.97329 * 21 19 17 24 24 H 1.48500 * 109.47186 * 333.97637 * 21 19 17 25 25 C 1.48146 * 104.54936 * 320.26480 * 16 15 13 26 26 C 1.52993 * 117.40813 * 135.77345 * 11 10 8 27 27 H 1.09000 * 119.54429 * 355.89333 * 26 11 10 28 28 C 1.35210 * 113.71484 * 359.56441 * 7 6 5 29 29 S 1.70769 * 124.71872 * 239.97482 * 5 2 1 30 30 H 1.08999 * 109.46856 * 299.99414 * 1 2 3 31 31 H 1.08998 * 109.47604 * 59.99579 * 1 2 3 32 32 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47637 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47488 * 300.00862 * 3 2 1 35 35 H 1.09003 * 109.47078 * 60.00259 * 3 2 1 36 36 H 1.08997 * 109.47372 * 299.99766 * 4 2 1 37 37 H 1.08995 * 109.47132 * 60.00181 * 4 2 1 38 38 H 1.08999 * 109.46738 * 179.97438 * 4 2 1 39 39 H 0.96996 * 119.99648 * 359.97438 * 10 8 7 40 40 H 1.08997 * 110.40350 * 207.98776 * 15 13 11 41 41 H 1.09000 * 110.40856 * 330.42456 * 15 13 11 42 42 H 0.97007 * 119.99966 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.41245 * 281.08099 * 25 16 15 44 44 H 1.09005 * 110.40531 * 158.64523 * 25 16 15 45 45 H 1.08003 * 125.58271 * 180.19137 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7818 -1.9384 1.5211 7 6 2.3156 -2.3858 2.6607 8 6 2.1299 -3.7620 3.1510 9 8 2.6467 -4.1103 4.1955 10 7 1.3871 -4.6353 2.4425 11 6 1.2018 -6.0041 2.9306 12 1 1.8227 -6.2876 3.7804 13 6 0.8879 -7.0855 1.8948 14 1 0.8788 -6.8287 0.8356 15 6 1.1646 -8.5569 2.2722 16 7 -0.1299 -8.9835 2.9412 17 6 -0.7736 -10.1865 2.8250 18 1 -1.7936 -10.2881 3.1653 19 6 -0.1153 -11.2752 2.2701 20 7 1.1743 -11.2051 2.0161 21 14 -1.0596 -12.8399 1.8834 22 1 -1.5067 -12.8113 0.4675 23 1 -0.1793 -14.0159 2.1007 24 1 -2.2436 -12.9365 2.7745 25 6 -0.5344 -7.8107 3.7509 26 6 -0.2090 -6.5918 2.8609 27 1 -1.0352 -5.9672 2.5213 28 6 3.0473 -1.4589 3.3192 29 16 3.0188 0.0004 2.4295 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2494 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 0.9746 -4.3573 1.6098 40 1 1.3811 -9.1438 1.3796 41 1 1.9921 -8.6188 2.9789 42 1 1.6342 -11.9658 1.6279 43 1 0.0411 -7.7705 4.6757 44 1 -1.6020 -7.8487 3.9679 45 1 3.5645 -1.6148 4.2544 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962047838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:59 Heat of formation + Delta-G solvation = 38.473914 kcal Electronic energy + Delta-G solvation = -25888.713379 eV Core-core repulsion = 22226.680870 eV Total energy + Delta-G solvation = -3662.032509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73729 -40.60353 -39.51860 -37.50889 -36.04684 -34.35367 -32.11764 -31.14135 -28.94615 -28.28443 -28.13978 -27.93161 -26.74728 -24.56775 -23.10692 -22.01716 -21.04819 -20.83478 -20.44222 -19.31989 -18.86955 -17.96774 -17.22706 -16.75268 -16.57087 -16.53318 -15.72126 -15.51340 -15.37764 -15.12698 -14.89614 -14.62561 -14.45064 -14.33949 -13.80504 -13.36461 -13.28542 -13.18021 -13.06140 -12.94273 -12.80499 -12.72455 -12.55898 -12.51798 -12.20210 -12.03244 -11.95474 -11.88243 -11.87497 -11.70326 -11.39392 -10.89310 -10.79345 -10.73914 -10.62953 -10.04307 -9.71311 -8.94833 -7.91152 -5.27144 -0.54257 0.22758 0.57490 0.82484 1.46600 1.48518 1.57869 1.90634 2.13920 2.48338 2.79718 2.81609 3.29028 3.47941 3.55704 3.77552 3.86095 3.92084 3.99082 4.04691 4.08906 4.16625 4.31658 4.33807 4.45565 4.65843 4.74716 4.79166 4.81417 4.85150 4.89471 4.95187 5.01730 5.01930 5.08889 5.22531 5.30276 5.33518 5.40473 5.41478 5.43543 5.46626 5.62124 6.09496 6.20999 6.54369 6.94484 7.00061 7.63984 8.43860 9.23423 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002222 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.842003 B =12596.446538 C =13254.121741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.010 3.990 3 C -0.156 4.156 4 C -0.135 4.135 5 C 0.025 3.975 6 N -0.460 5.460 7 C -0.011 4.011 8 C 0.593 3.407 9 O -0.572 6.572 10 N -0.668 5.668 11 C 0.112 3.888 12 H 0.112 0.888 13 C -0.175 4.175 14 H 0.122 0.878 15 C 0.190 3.810 16 N -0.622 5.622 17 C -0.238 4.238 18 H 0.083 0.917 19 C -0.066 4.066 20 N -0.950 5.950 21 Si 0.983 3.017 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.154 3.846 26 C -0.164 4.164 27 H 0.132 0.868 28 C -0.244 4.244 29 S 0.298 5.702 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.418 0.582 40 H 0.066 0.934 41 H 0.005 0.995 42 H 0.250 0.750 43 H 0.020 0.980 44 H 0.065 0.935 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 32.720 -6.162 33.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 C -0.214 4.214 4 C -0.194 4.194 5 C -0.255 4.255 6 N -0.175 5.175 7 C -0.146 4.146 8 C 0.378 3.622 9 O -0.451 6.451 10 N -0.317 5.317 11 C 0.005 3.995 12 H 0.129 0.871 13 C -0.196 4.196 14 H 0.140 0.860 15 C 0.065 3.935 16 N -0.348 5.348 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.810 3.190 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.191 1.191 25 C 0.028 3.972 26 C -0.185 4.185 27 H 0.150 0.850 28 C -0.387 4.387 29 S 0.559 5.441 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.023 0.977 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.084 0.916 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.616 32.868 -5.671 33.456 hybrid contribution -0.425 -2.422 0.073 2.460 sum 2.191 30.446 -5.598 31.034 Atomic orbital electron populations 1.21852 0.91945 1.02355 1.03164 1.19420 0.96857 0.94970 0.88077 1.22087 1.02094 0.92516 1.04660 1.21859 1.01145 1.00354 0.96025 1.27772 1.01450 0.93220 1.03058 1.66775 1.22433 1.13750 1.14572 1.20057 1.04207 0.95901 0.94423 1.17477 0.77805 0.83860 0.83019 1.90793 1.50766 1.78866 1.24709 1.45029 1.50873 1.09674 1.26084 1.21505 0.98116 0.80622 0.99215 0.87057 1.24290 1.04500 0.94089 0.96724 0.86025 1.21463 0.86891 0.88779 0.96328 1.46373 1.25379 1.11697 1.51316 1.19433 0.95362 0.86322 1.35535 0.89925 1.25739 0.96476 1.00947 1.02731 1.70087 1.08706 1.31349 1.49663 0.85006 0.77541 0.78358 0.78052 1.21180 1.22172 1.19132 1.21180 0.98599 0.85387 0.92031 1.24298 0.92344 0.99637 1.02201 0.85032 1.26962 1.04855 0.99288 1.07633 1.82460 1.42461 1.08696 1.10511 0.92375 0.89584 0.93267 0.91169 0.88680 0.91078 0.93302 0.89565 0.92503 0.74444 0.91601 0.97732 0.94117 0.96192 0.91634 0.79143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.45 71.98 0.61 -0.83 16 2 C 0.01 0.11 0.99 -52.93 -0.05 0.06 16 3 C -0.16 -0.77 7.53 71.98 0.54 -0.23 16 4 C -0.14 -1.50 8.45 71.98 0.61 -0.89 16 5 C 0.02 0.39 5.74 88.58 0.51 0.90 16 6 N -0.46 -10.32 10.10 -180.83 -1.83 -12.14 16 7 C -0.01 -0.28 6.70 40.56 0.27 -0.01 16 8 C 0.59 19.35 7.80 86.62 0.68 20.02 16 9 O -0.57 -22.44 16.28 -4.12 -0.07 -22.51 16 10 N -0.67 -20.74 5.56 -445.97 -2.48 -23.22 16 11 C 0.11 4.08 5.97 44.99 0.27 4.34 16 12 H 0.11 4.61 7.40 -2.39 -0.02 4.59 16 13 C -0.18 -6.92 6.96 -9.88 -0.07 -6.99 16 14 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 15 C 0.19 9.70 5.91 85.79 0.51 10.21 16 16 N -0.62 -33.25 3.45 -678.13 -2.34 -35.59 16 17 C -0.24 -13.62 10.37 84.03 0.87 -12.75 16 18 H 0.08 4.50 7.84 -2.91 -0.02 4.48 16 19 C -0.07 -3.79 5.43 84.86 0.46 -3.33 16 20 N -0.95 -58.18 10.79 21.65 0.23 -57.95 16 21 Si 0.98 46.25 29.56 68.60 2.03 48.27 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.15 6.71 7.05 86.54 0.61 7.32 16 26 C -0.16 -6.00 7.06 -9.89 -0.07 -6.07 16 27 H 0.13 4.14 8.14 -2.39 -0.02 4.12 16 28 C -0.24 -4.99 10.62 67.12 0.71 -4.28 16 29 S 0.30 3.66 21.28 -56.49 -1.20 2.46 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.29 7.91 -2.39 -0.02 0.27 16 34 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.07 0.28 7.91 -2.39 -0.02 0.26 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.42 11.31 8.35 -92.71 -0.77 10.54 16 40 H 0.07 3.72 6.57 -2.39 -0.02 3.71 16 41 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 45 H 0.19 3.68 8.03 -2.91 -0.02 3.66 16 Total: -1.00 -73.35 383.38 1.03 -72.33 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.23 Total: 20.86 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 6.45 Total: 7.49 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -6.41 Total: -128.90 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.07 Total: -22.51 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.20 Total: 2.46 kcal Total: -73.35 1.03 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962047838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.801 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds