Wall clock time and date at job start Tue Mar 31 2020 18:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47119 * 2 1 4 4 C 1.50701 * 109.47444 * 119.99823 * 2 1 3 5 5 N 1.30939 * 122.90557 * 293.42372 * 4 2 1 6 6 C 1.29433 * 117.36600 * 180.02562 * 5 4 2 7 7 S 1.70951 * 110.38811 * 359.72360 * 6 5 4 8 8 C 1.35669 * 122.90420 * 113.46135 * 4 2 1 9 9 C 1.46683 * 126.12816 * 359.96422 * 8 4 2 10 10 O 1.21690 * 119.99980 * 5.30150 * 9 8 4 11 11 N 1.34779 * 119.99837 * 185.30249 * 9 8 4 12 12 C 1.46498 * 119.99898 * 179.72292 * 11 9 8 13 13 C 1.53003 * 109.47113 * 180.27276 * 12 11 9 14 14 H 1.09000 * 115.51030 * 29.58660 * 13 12 11 15 15 C 1.52995 * 117.44434 * 244.24006 * 13 12 11 16 16 H 1.09000 * 119.53916 * 4.12091 * 15 13 12 17 17 C 1.57693 * 116.11048 * 161.63360 * 15 13 12 18 18 N 1.48155 * 104.67102 * 87.31129 * 17 15 13 19 19 C 1.36930 * 127.83857 * 139.77535 * 18 17 15 20 20 H 1.08007 * 120.00141 * 343.16211 * 19 18 17 21 21 C 1.38809 * 120.00115 * 163.17160 * 19 18 17 22 22 N 1.31611 * 120.00022 * 350.86158 * 21 19 18 23 23 Si 1.86801 * 120.00040 * 170.86447 * 21 19 18 24 24 H 1.48494 * 109.47380 * 59.99689 * 23 21 19 25 25 H 1.48503 * 109.46918 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47347 * 299.99617 * 23 21 19 27 27 C 1.48146 * 104.32059 * 319.77881 * 18 17 15 28 28 C 1.53000 * 117.44299 * 175.00193 * 13 12 11 29 29 H 1.08998 * 119.53610 * 355.88440 * 28 13 12 30 30 H 1.09000 * 109.47362 * 299.99542 * 1 2 3 31 31 H 1.08993 * 109.47751 * 59.99836 * 1 2 3 32 32 H 1.09002 * 109.46944 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47512 * 239.99949 * 2 1 3 34 34 H 1.09000 * 109.46629 * 60.00009 * 3 2 1 35 35 H 1.08996 * 109.46722 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46768 * 300.00144 * 3 2 1 37 37 H 1.08000 * 124.80391 * 180.02562 * 6 5 4 38 38 H 0.97003 * 119.99826 * 359.97438 * 11 9 8 39 39 H 1.08995 * 109.47385 * 300.27501 * 12 11 9 40 40 H 1.09004 * 109.46828 * 60.27578 * 12 11 9 41 41 H 1.08998 * 110.92310 * 328.24198 * 17 15 13 42 42 H 1.08992 * 109.94029 * 205.88975 * 17 15 13 43 43 H 0.97000 * 120.00339 * 180.02562 * 22 21 19 44 44 H 1.09001 * 110.40429 * 280.79466 * 27 18 17 45 45 H 1.09000 * 110.40534 * 158.36910 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.8575 -0.2449 2.4418 6 6 2.3342 -0.9429 3.4220 7 16 3.0934 -2.3566 2.8324 8 6 2.7056 -1.8871 1.1789 9 6 3.0441 -2.6373 -0.0353 10 8 2.8007 -2.1649 -1.1301 11 7 3.6246 -3.8498 0.0616 12 6 3.9571 -4.6017 -1.1509 13 6 4.5951 -5.9374 -0.7638 14 1 4.2718 -6.3529 0.1906 15 6 6.0498 -6.1700 -1.1768 16 1 6.6044 -5.3688 -1.6652 17 6 6.8153 -7.3139 -0.4072 18 7 6.5117 -8.5474 -1.1697 19 6 7.3611 -9.5776 -1.4733 20 1 8.4292 -9.4383 -1.3938 21 6 6.8494 -10.8011 -1.8835 22 7 5.5557 -11.0314 -1.8096 23 14 7.9970 -12.1206 -2.5402 24 1 8.9890 -12.4788 -1.4950 25 1 7.2086 -13.3243 -2.9071 26 1 8.7057 -11.6078 -3.7402 27 6 5.0809 -8.4131 -1.5294 28 6 4.9084 -6.9224 -1.8919 29 1 4.6128 -6.6816 -2.9130 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6765 1.9564 -0.8900 37 1 2.2585 -0.6731 4.4650 38 1 3.8189 -4.2261 0.9343 39 1 3.0490 -4.7856 -1.7249 40 1 4.6583 -4.0256 -1.7548 41 1 6.4547 -7.4024 0.6176 42 1 7.8869 -7.1154 -0.4165 43 1 5.1981 -11.8865 -2.0958 44 1 4.4495 -8.6732 -0.6798 45 1 4.8438 -9.0427 -2.3870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978817505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:21 Heat of formation + Delta-G solvation = 62.644736 kcal Electronic energy + Delta-G solvation = -25678.774150 eV Core-core repulsion = 22017.789767 eV Total energy + Delta-G solvation = -3660.984383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82268 -39.47926 -38.57347 -35.34692 -34.82824 -33.42255 -31.19456 -30.47427 -27.60727 -27.31288 -27.02126 -26.04186 -24.83351 -22.63281 -21.65865 -21.19538 -20.36189 -19.43956 -19.25499 -18.16396 -17.20102 -16.81309 -16.17826 -15.73058 -15.37536 -14.87170 -14.74947 -14.57916 -14.46959 -14.17580 -13.84888 -13.62274 -13.15162 -13.09085 -12.83275 -12.70220 -12.64745 -12.31259 -11.92568 -11.40651 -11.37194 -11.24806 -11.14861 -11.12481 -10.84210 -10.66878 -10.31853 -10.29578 -10.17302 -9.91403 -9.85846 -9.76948 -9.51870 -9.24574 -9.19564 -9.02734 -8.65991 -6.89448 -5.83491 -3.18189 -0.09436 0.83606 1.21002 2.13880 2.88315 2.92961 3.36633 3.41448 3.42537 3.77801 4.10424 4.43126 4.47821 4.61774 4.65427 4.84760 4.99292 5.04261 5.20895 5.24704 5.35042 5.40859 5.45244 5.48522 5.60961 5.67329 5.71350 5.74135 5.77205 5.83773 5.88958 5.91329 6.04986 6.14372 6.19149 6.34292 6.49808 6.61851 6.64923 6.86479 7.16999 7.30326 7.32114 7.49063 7.68109 7.92135 8.17458 9.07502 9.70401 10.47813 11.31115 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.002055 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.395586 B =13624.188070 C =14127.886002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.136 4.136 4 C 0.155 3.845 5 N -0.469 5.469 6 C 0.035 3.965 7 S 0.163 5.837 8 C -0.294 4.294 9 C 0.596 3.404 10 O -0.523 6.523 11 N -0.715 5.715 12 C 0.155 3.845 13 C -0.156 4.156 14 H 0.103 0.897 15 C -0.171 4.171 16 H 0.108 0.892 17 C 0.155 3.845 18 N -0.594 5.594 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.004 4.004 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.185 3.815 28 C -0.160 4.160 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.127 0.873 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.206 0.794 38 H 0.400 0.600 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.049 0.951 43 H 0.255 0.745 44 H 0.024 0.976 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 21.859 9.460 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.194 4.194 4 C 0.016 3.984 5 N -0.182 5.182 6 C -0.261 4.261 7 S 0.419 5.581 8 C -0.418 4.418 9 C 0.382 3.618 10 O -0.402 6.402 11 N -0.366 5.366 12 C 0.032 3.968 13 C -0.175 4.175 14 H 0.121 0.879 15 C -0.191 4.191 16 H 0.126 0.874 17 C 0.029 3.971 18 N -0.317 5.317 19 C -0.357 4.357 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.059 3.941 28 C -0.181 4.181 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.145 0.855 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.222 0.778 38 H 0.234 0.766 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.242 21.496 9.269 24.817 hybrid contribution 0.336 -0.447 -0.320 0.644 sum -7.906 21.049 8.949 24.200 Atomic orbital electron populations 1.21733 0.93689 1.01870 1.02135 1.20433 0.96397 0.96329 0.94019 1.21733 1.00855 0.94685 1.02148 1.20720 0.93716 0.90609 0.93322 1.66053 1.20941 1.32591 0.98631 1.28751 0.98989 0.94705 1.03651 1.84064 1.52198 1.24092 0.97787 1.25540 1.15020 1.03687 0.97516 1.16654 0.77575 0.80793 0.86818 1.90714 1.54255 1.68219 1.26979 1.45961 1.61768 1.18088 1.10786 1.20964 0.99997 0.90184 0.85631 1.22552 0.98654 0.95561 1.00770 0.87902 1.24727 0.89344 1.00602 1.04437 0.87444 1.21720 0.96752 0.85776 0.92882 1.45127 1.07787 1.18413 1.60352 1.18934 0.88471 0.88618 1.39723 0.90668 1.24917 0.96265 0.97006 1.01981 1.69886 1.10846 1.23790 1.51558 0.86191 0.79596 0.80938 0.78975 1.20956 1.21521 1.21029 1.21056 0.85494 0.87840 0.99720 1.24181 1.02094 0.96204 0.95606 0.87933 0.92341 0.91831 0.92883 0.85540 0.92089 0.92973 0.92021 0.77755 0.76558 0.90694 0.91005 0.95559 0.93291 0.93461 0.95767 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.17 37.15 0.34 -0.95 16 2 C -0.05 -0.55 3.15 -91.77 -0.29 -0.84 16 3 C -0.14 -1.27 9.08 37.16 0.34 -0.93 16 4 C 0.15 1.72 5.40 -83.89 -0.45 1.27 16 5 N -0.47 -4.71 10.27 -11.53 -0.12 -4.83 16 6 C 0.03 0.25 12.22 51.75 0.63 0.88 16 7 S 0.16 1.24 22.37 -107.50 -2.40 -1.17 16 8 C -0.29 -3.24 6.48 -37.09 -0.24 -3.48 16 9 C 0.60 7.65 7.77 -12.85 -0.10 7.55 16 10 O -0.52 -8.00 14.02 5.20 0.07 -7.93 16 11 N -0.72 -8.36 5.55 -61.62 -0.34 -8.70 16 12 C 0.15 2.01 5.95 -4.04 -0.02 1.99 16 13 C -0.16 -2.30 5.34 -90.62 -0.48 -2.79 16 14 H 0.10 1.51 8.04 -51.93 -0.42 1.09 16 15 C -0.17 -2.90 7.03 -87.39 -0.61 -3.51 16 16 H 0.11 1.67 8.12 -51.93 -0.42 1.25 16 17 C 0.16 3.15 7.10 -0.57 0.00 3.15 16 18 N -0.59 -14.93 3.38 -166.73 -0.56 -15.49 16 19 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 20 H 0.08 2.00 7.85 -52.48 -0.41 1.58 16 21 C 0.00 -0.12 5.39 -17.43 -0.09 -0.21 16 22 N -0.92 -26.47 10.94 55.49 0.61 -25.86 16 23 Si 0.91 21.68 29.56 -169.99 -5.03 16.66 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.18 4.32 5.67 -2.41 -0.01 4.31 16 28 C -0.16 -2.93 6.77 -89.23 -0.60 -3.53 16 29 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.13 1.60 4.96 -51.93 -0.26 1.34 16 34 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.21 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.40 3.97 7.60 -40.82 -0.31 3.66 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 2.30 6.61 -51.93 -0.34 1.96 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -31.69 381.23 -10.57 -42.26 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.78 Total: 2.89 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.76 Total: -3.56 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.42 Total: -54.89 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.40 Total: -1.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.69 -10.57 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978817505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.902 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds