Wall clock time and date at job start Tue Mar 31 2020 18:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47119 * 2 1 4 4 C 1.50701 * 109.47444 * 119.99823 * 2 1 3 5 5 N 1.30939 * 122.90557 * 293.42372 * 4 2 1 6 6 C 1.29433 * 117.36600 * 180.02562 * 5 4 2 7 7 S 1.70951 * 110.38811 * 359.72360 * 6 5 4 8 8 C 1.35669 * 122.90420 * 113.46135 * 4 2 1 9 9 C 1.46683 * 126.12816 * 359.96422 * 8 4 2 10 10 O 1.21690 * 119.99980 * 5.30150 * 9 8 4 11 11 N 1.34779 * 119.99837 * 185.30249 * 9 8 4 12 12 C 1.46498 * 119.99898 * 179.72292 * 11 9 8 13 13 C 1.53003 * 109.47113 * 180.27276 * 12 11 9 14 14 H 1.09000 * 115.51030 * 29.58660 * 13 12 11 15 15 C 1.52995 * 117.44434 * 244.24006 * 13 12 11 16 16 H 1.09000 * 119.53916 * 4.12091 * 15 13 12 17 17 C 1.57693 * 116.11048 * 161.63360 * 15 13 12 18 18 N 1.48155 * 104.67102 * 87.31129 * 17 15 13 19 19 C 1.36930 * 127.83857 * 139.77535 * 18 17 15 20 20 H 1.08007 * 120.00141 * 343.16211 * 19 18 17 21 21 C 1.38809 * 120.00115 * 163.17160 * 19 18 17 22 22 N 1.31611 * 120.00022 * 350.86158 * 21 19 18 23 23 Si 1.86801 * 120.00040 * 170.86447 * 21 19 18 24 24 H 1.48494 * 109.47380 * 59.99689 * 23 21 19 25 25 H 1.48503 * 109.46918 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47347 * 299.99617 * 23 21 19 27 27 C 1.48146 * 104.32059 * 319.77881 * 18 17 15 28 28 C 1.53000 * 117.44299 * 175.00193 * 13 12 11 29 29 H 1.08998 * 119.53610 * 355.88440 * 28 13 12 30 30 H 1.09000 * 109.47362 * 299.99542 * 1 2 3 31 31 H 1.08993 * 109.47751 * 59.99836 * 1 2 3 32 32 H 1.09002 * 109.46944 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47512 * 239.99949 * 2 1 3 34 34 H 1.09000 * 109.46629 * 60.00009 * 3 2 1 35 35 H 1.08996 * 109.46722 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46768 * 300.00144 * 3 2 1 37 37 H 1.08000 * 124.80391 * 180.02562 * 6 5 4 38 38 H 0.97003 * 119.99826 * 359.97438 * 11 9 8 39 39 H 1.08995 * 109.47385 * 300.27501 * 12 11 9 40 40 H 1.09004 * 109.46828 * 60.27578 * 12 11 9 41 41 H 1.08998 * 110.92310 * 328.24198 * 17 15 13 42 42 H 1.08992 * 109.94029 * 205.88975 * 17 15 13 43 43 H 0.97000 * 120.00339 * 180.02562 * 22 21 19 44 44 H 1.09001 * 110.40429 * 280.79466 * 27 18 17 45 45 H 1.09000 * 110.40534 * 158.36910 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.8575 -0.2449 2.4418 6 6 2.3342 -0.9429 3.4220 7 16 3.0934 -2.3566 2.8324 8 6 2.7056 -1.8871 1.1789 9 6 3.0441 -2.6373 -0.0353 10 8 2.8007 -2.1649 -1.1301 11 7 3.6246 -3.8498 0.0616 12 6 3.9571 -4.6017 -1.1509 13 6 4.5951 -5.9374 -0.7638 14 1 4.2718 -6.3529 0.1906 15 6 6.0498 -6.1700 -1.1768 16 1 6.6044 -5.3688 -1.6652 17 6 6.8153 -7.3139 -0.4072 18 7 6.5117 -8.5474 -1.1697 19 6 7.3611 -9.5776 -1.4733 20 1 8.4292 -9.4383 -1.3938 21 6 6.8494 -10.8011 -1.8835 22 7 5.5557 -11.0314 -1.8096 23 14 7.9970 -12.1206 -2.5402 24 1 8.9890 -12.4788 -1.4950 25 1 7.2086 -13.3243 -2.9071 26 1 8.7057 -11.6078 -3.7402 27 6 5.0809 -8.4131 -1.5294 28 6 4.9084 -6.9224 -1.8919 29 1 4.6128 -6.6816 -2.9130 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6765 1.9564 -0.8900 37 1 2.2585 -0.6731 4.4650 38 1 3.8189 -4.2261 0.9343 39 1 3.0490 -4.7856 -1.7249 40 1 4.6583 -4.0256 -1.7548 41 1 6.4547 -7.4024 0.6176 42 1 7.8869 -7.1154 -0.4165 43 1 5.1981 -11.8865 -2.0958 44 1 4.4495 -8.6732 -0.6798 45 1 4.8438 -9.0427 -2.3870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978817505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:20 Heat of formation + Delta-G solvation = 43.034336 kcal Electronic energy + Delta-G solvation = -25679.624521 eV Core-core repulsion = 22017.789767 eV Total energy + Delta-G solvation = -3661.834754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62307 -40.59643 -39.87347 -36.48345 -35.76340 -35.02640 -32.82997 -31.51071 -28.99716 -28.65919 -28.04567 -27.15263 -26.19762 -23.50519 -22.86724 -22.40499 -21.72743 -20.87760 -20.33954 -18.91188 -18.79568 -18.03071 -17.10926 -16.82167 -16.65426 -16.22053 -15.87476 -15.63533 -15.32801 -15.21923 -15.15104 -14.72801 -14.59740 -14.45526 -14.15446 -13.81356 -13.39374 -13.34242 -13.17316 -13.01099 -12.88348 -12.69277 -12.35320 -12.19363 -12.12906 -11.97397 -11.90374 -11.87200 -11.76020 -11.09827 -10.96625 -10.76028 -10.69765 -10.62345 -10.51130 -10.14517 -9.85878 -8.89805 -7.92577 -5.28901 -0.78946 0.18767 0.56207 1.38256 1.46255 1.49378 1.55878 1.91836 2.04827 2.47536 2.73922 3.15972 3.25483 3.58498 3.64135 3.71584 3.85254 3.89816 4.02972 4.16277 4.23765 4.24590 4.29895 4.34705 4.53039 4.57350 4.64409 4.70911 4.78916 4.84888 4.92083 4.94206 5.00529 5.01864 5.10252 5.20061 5.30718 5.32206 5.36319 5.44705 5.52864 5.53217 5.65741 6.17815 6.29311 6.59295 6.99251 7.00814 7.68207 8.46983 9.21377 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.002055 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.395586 B =13624.188070 C =14127.886002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.129 4.129 4 C 0.150 3.850 5 N -0.494 5.494 6 C 0.048 3.952 7 S 0.209 5.791 8 C -0.329 4.329 9 C 0.596 3.404 10 O -0.554 6.554 11 N -0.709 5.709 12 C 0.164 3.836 13 C -0.117 4.117 14 H 0.108 0.892 15 C -0.157 4.157 16 H 0.131 0.869 17 C 0.148 3.852 18 N -0.620 5.620 19 C -0.242 4.242 20 H 0.080 0.920 21 C -0.062 4.062 22 N -0.947 5.947 23 Si 0.979 3.021 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.278 1.278 27 C 0.190 3.810 28 C -0.175 4.175 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.246 0.754 38 H 0.409 0.591 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.055 0.945 43 H 0.250 0.750 44 H 0.003 0.997 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.919 23.590 11.013 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 C -0.187 4.187 4 C 0.011 3.989 5 N -0.207 5.207 6 C -0.247 4.247 7 S 0.466 5.534 8 C -0.453 4.453 9 C 0.383 3.617 10 O -0.436 6.436 11 N -0.360 5.360 12 C 0.041 3.959 13 C -0.136 4.136 14 H 0.126 0.874 15 C -0.177 4.177 16 H 0.148 0.852 17 C 0.023 3.977 18 N -0.344 5.344 19 C -0.371 4.371 20 H 0.098 0.902 21 C -0.256 4.256 22 N -0.594 5.594 23 Si 0.807 3.193 24 H -0.199 1.199 25 H -0.220 1.220 26 H -0.204 1.204 27 C 0.065 3.935 28 C -0.196 4.196 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.261 0.739 38 H 0.246 0.754 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.021 0.979 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.772 23.245 10.863 26.810 hybrid contribution 0.194 -0.943 -0.671 1.173 sum -7.578 22.303 10.192 25.666 Atomic orbital electron populations 1.21678 0.92924 1.01379 1.02802 1.20409 0.97080 0.96836 0.93488 1.21674 1.00270 0.93997 1.02776 1.20817 0.93510 0.90671 0.93915 1.66099 1.22460 1.33530 0.98632 1.29496 0.96582 0.93783 1.04818 1.83875 1.51231 1.23501 0.94827 1.25431 1.16814 1.04234 0.98820 1.16881 0.76962 0.80759 0.87120 1.90702 1.55492 1.68951 1.28407 1.45815 1.61614 1.17814 1.10801 1.20768 0.99831 0.89142 0.86152 1.22429 0.96771 0.95062 0.99309 0.87360 1.24656 0.89688 0.99824 1.03510 0.85176 1.21885 0.97803 0.85020 0.92985 1.45442 1.08112 1.19378 1.61486 1.19324 0.89219 0.89517 1.39034 0.90240 1.25754 0.97733 0.99263 1.02842 1.70081 1.12531 1.23918 1.52883 0.85150 0.77705 0.77944 0.78506 1.19946 1.22005 1.20370 1.20786 0.84769 0.90707 0.97281 1.23862 1.04837 0.93429 0.97441 0.86893 0.92060 0.90711 0.93904 0.87619 0.91894 0.93754 0.90887 0.73853 0.75420 0.90787 0.90732 0.95060 0.92637 0.94106 0.97890 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.17 71.98 0.66 -1.73 16 2 C -0.06 -1.22 3.15 -11.54 -0.04 -1.25 16 3 C -0.13 -2.32 9.08 71.98 0.65 -1.67 16 4 C 0.15 3.19 5.40 42.10 0.23 3.42 16 5 N -0.49 -8.93 10.27 -190.40 -1.96 -10.88 16 6 C 0.05 0.53 12.22 130.60 1.60 2.13 16 7 S 0.21 2.60 22.37 -56.49 -1.26 1.34 16 8 C -0.33 -6.84 6.48 23.88 0.15 -6.68 16 9 C 0.60 14.75 7.77 86.45 0.67 15.42 16 10 O -0.55 -16.93 14.02 -4.32 -0.06 -16.99 16 11 N -0.71 -15.29 5.55 -467.08 -2.59 -17.89 16 12 C 0.16 3.95 5.95 86.38 0.51 4.46 16 13 C -0.12 -3.22 5.34 -10.79 -0.06 -3.27 16 14 H 0.11 2.95 8.04 -2.39 -0.02 2.93 16 15 C -0.16 -5.01 7.03 -8.70 -0.06 -5.07 16 16 H 0.13 3.64 8.12 -2.39 -0.02 3.62 16 17 C 0.15 5.87 7.10 87.72 0.62 6.50 16 18 N -0.62 -31.57 3.38 -681.42 -2.30 -33.87 16 19 C -0.24 -13.48 10.35 84.03 0.87 -12.61 16 20 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 21 C -0.06 -3.50 5.39 84.86 0.46 -3.05 16 22 N -0.95 -56.61 10.94 21.65 0.24 -56.37 16 23 Si 0.98 45.17 29.56 68.60 2.03 47.20 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 C 0.19 9.17 5.67 86.53 0.49 9.66 16 28 C -0.18 -6.30 6.77 -9.89 -0.07 -6.36 16 29 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.11 2.73 4.96 -2.39 -0.01 2.71 16 34 H 0.06 1.09 8.06 -2.39 -0.02 1.07 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.25 0.53 8.06 -2.91 -0.02 0.51 16 38 H 0.41 7.14 7.60 -92.71 -0.70 6.44 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.82 7.94 -2.38 -0.02 1.80 16 41 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 44 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.05 2.73 6.61 -2.39 -0.02 2.71 16 Total: -1.00 -70.95 381.23 1.09 -69.86 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.30 Total: 17.71 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.70 Total: -0.11 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -6.61 Total: -119.02 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.06 Total: -16.99 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.26 Total: 1.34 kcal Total: -70.95 1.09 -69.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978817505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.899 kcal (2) G-P(sol) polarization free energy of solvation -70.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds