Wall clock time and date at job start Tue Mar 31 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47330 * 2 1 4 4 C 1.50696 * 109.47576 * 120.00948 * 2 1 3 5 5 S 1.70947 * 125.58288 * 305.32533 * 4 2 1 6 6 C 1.70769 * 91.12778 * 179.97438 * 5 4 2 7 7 N 1.28637 * 110.56122 * 359.76777 * 6 5 4 8 8 C 1.33560 * 115.76729 * 0.42016 * 7 6 5 9 9 C 1.47268 * 123.14399 * 179.82912 * 8 7 6 10 10 O 1.21629 * 119.99962 * 174.28058 * 9 8 7 11 11 N 1.34782 * 119.99845 * 354.28598 * 9 8 7 12 12 C 1.46501 * 119.99990 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.46993 * 179.97438 * 12 11 9 14 14 H 1.09000 * 115.51394 * 29.59323 * 13 12 11 15 15 C 1.52997 * 117.44408 * 244.24300 * 13 12 11 16 16 H 1.09001 * 119.53731 * 4.11707 * 15 13 12 17 17 C 1.54391 * 118.12570 * 160.81301 * 15 13 12 18 18 N 1.48143 * 104.61593 * 87.18719 * 17 15 13 19 19 C 1.36941 * 127.83355 * 140.41660 * 18 17 15 20 20 H 1.08000 * 120.00084 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99967 * 179.97438 * 19 18 17 22 22 N 1.31615 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00008 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47373 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46840 * 120.00069 * 23 21 19 26 26 H 1.48496 * 109.47214 * 239.99827 * 23 21 19 27 27 C 1.51826 * 104.55444 * 320.14568 * 18 17 15 28 28 C 1.53001 * 117.43873 * 175.00337 * 13 12 11 29 29 H 1.09003 * 119.54314 * 355.88668 * 28 13 12 30 30 H 1.08996 * 109.47374 * 59.99043 * 1 2 3 31 31 H 1.09003 * 109.47055 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46883 * 299.99163 * 1 2 3 33 33 H 1.09006 * 109.46883 * 240.00837 * 2 1 3 34 34 H 1.09000 * 109.47577 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47673 * 300.00774 * 3 2 1 36 36 H 1.09006 * 109.46454 * 60.00574 * 3 2 1 37 37 H 1.07997 * 124.71350 * 179.97438 * 6 5 4 38 38 H 0.96997 * 120.00034 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.46661 * 60.00423 * 12 11 9 40 40 H 1.08998 * 109.47109 * 300.00614 * 12 11 9 41 41 H 1.08997 * 110.40867 * 205.97523 * 17 15 13 42 42 H 1.09005 * 110.40372 * 328.40740 * 17 15 13 43 43 H 0.97009 * 120.00393 * 179.97438 * 22 21 19 44 44 H 1.09005 * 110.21911 * 281.99484 * 27 18 17 45 45 H 1.09001 * 112.26117 * 158.41880 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7106 1.2303 5 16 1.6062 -0.3314 2.8417 6 6 2.6017 -1.5853 3.4358 7 7 3.1756 -2.2047 2.4653 8 6 2.8937 -1.7527 1.2405 9 6 3.4630 -2.3387 0.0152 10 8 3.0883 -1.9512 -1.0751 11 7 4.3992 -3.3044 0.1021 12 6 4.9651 -3.8877 -1.1168 13 6 5.9978 -4.9522 -0.7408 14 1 5.8196 -5.4662 0.2037 15 6 7.4524 -4.6953 -1.1395 16 1 7.7217 -3.7497 -1.6099 17 6 8.5580 -5.4869 -0.4083 18 7 8.6890 -6.7451 -1.1793 19 6 9.8375 -7.4203 -1.4963 20 1 10.7948 -7.0391 -1.1727 21 6 9.7711 -8.5953 -2.2326 22 7 8.6045 -9.0600 -2.6264 23 14 11.3376 -9.5166 -2.6643 24 1 12.5079 -8.7915 -2.1076 25 1 11.2827 -10.8839 -2.0872 26 1 11.4675 -9.6074 -4.1408 27 6 7.2628 -7.1247 -1.5353 28 6 6.6202 -5.7636 -1.8789 29 1 6.2697 -5.6137 -2.9001 30 1 -0.3634 0.5140 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8898 36 1 1.6767 1.9562 0.8901 37 1 2.7290 -1.8269 4.4806 38 1 4.6976 -3.6137 0.9716 39 1 5.4471 -3.1058 -1.7038 40 1 4.1690 -4.3447 -1.7045 41 1 9.4962 -4.9322 -0.4238 42 1 8.2580 -5.6995 0.6178 43 1 8.5580 -9.8809 -3.1413 44 1 6.7662 -7.5730 -0.6746 45 1 7.2158 -7.7948 -2.3937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978950530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:02 Heat of formation + Delta-G solvation = 63.460076 kcal Electronic energy + Delta-G solvation = -25728.971854 eV Core-core repulsion = 22068.022826 eV Total energy + Delta-G solvation = -3660.949028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84586 -39.05155 -38.33572 -36.17910 -34.80991 -33.24461 -30.84823 -30.13725 -27.73921 -27.51234 -26.99417 -25.90088 -24.68177 -22.60567 -21.78090 -21.06899 -20.42268 -19.46912 -19.11298 -18.27056 -17.04981 -16.81374 -16.08162 -15.75448 -15.53473 -14.82675 -14.57091 -14.56671 -14.29961 -14.11536 -13.79161 -13.54304 -13.38756 -13.01652 -12.71744 -12.59858 -12.56884 -12.38072 -11.83856 -11.81036 -11.59004 -11.45848 -11.23109 -10.93463 -10.82004 -10.62993 -10.26289 -10.16339 -10.09310 -9.84468 -9.77604 -9.66270 -9.39587 -9.23092 -9.09529 -8.84460 -8.77277 -6.90427 -5.65051 -3.09125 0.21348 0.88229 1.29953 1.73575 3.14456 3.20261 3.39897 3.44958 3.47681 3.83322 4.20334 4.31116 4.47807 4.52940 4.71480 4.79784 4.95459 5.03087 5.19751 5.24379 5.32444 5.41870 5.45596 5.47598 5.52641 5.56558 5.57838 5.73754 5.79364 5.88421 5.91598 5.93767 5.98365 6.08533 6.31413 6.43135 6.59383 6.67410 6.76009 6.95045 7.03947 7.34581 7.51661 7.56069 7.81664 8.10914 8.29824 9.13778 9.77970 10.49591 11.38312 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.001979 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.526928 B =14146.202905 C =14575.031021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.167 4.167 5 S 0.197 5.803 6 C -0.006 4.006 7 N -0.436 5.436 8 C -0.005 4.005 9 C 0.594 3.406 10 O -0.535 6.535 11 N -0.703 5.703 12 C 0.154 3.846 13 C -0.155 4.155 14 H 0.102 0.898 15 C -0.171 4.171 16 H 0.102 0.898 17 C 0.158 3.842 18 N -0.603 5.603 19 C -0.213 4.213 20 H 0.080 0.920 21 C -0.016 4.016 22 N -0.923 5.923 23 Si 0.917 3.083 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.154 3.846 28 C -0.153 4.153 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.137 0.863 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.205 0.795 38 H 0.411 0.589 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.023 0.977 43 H 0.253 0.747 44 H 0.015 0.985 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.898 20.543 11.114 29.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.291 4.291 5 S 0.453 5.547 6 C -0.306 4.306 7 N -0.150 5.150 8 C -0.140 4.140 9 C 0.378 3.622 10 O -0.413 6.413 11 N -0.353 5.353 12 C 0.031 3.969 13 C -0.174 4.174 14 H 0.120 0.880 15 C -0.191 4.191 16 H 0.120 0.880 17 C 0.032 3.968 18 N -0.327 5.327 19 C -0.341 4.341 20 H 0.097 0.903 21 C -0.211 4.211 22 N -0.572 5.572 23 Si 0.748 3.252 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.030 3.970 28 C -0.173 4.173 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.221 0.779 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.221 20.799 10.838 29.700 hybrid contribution 1.324 -1.016 -0.270 1.691 sum -16.897 19.783 10.568 28.081 Atomic orbital electron populations 1.21905 0.93731 1.02333 1.02158 1.20324 0.95958 0.95977 0.95064 1.21875 1.01596 0.94364 1.02115 1.25692 1.01456 1.00585 1.01393 1.82821 1.42980 1.32740 0.96161 1.28328 1.00419 0.98186 1.03641 1.66948 1.22545 1.27499 0.98018 1.20355 1.02688 0.98537 0.92394 1.17016 0.79263 0.79423 0.86537 1.90658 1.61369 1.61807 1.27514 1.45895 1.40166 1.38140 1.11101 1.20954 0.95405 0.94777 0.85767 1.22570 0.93374 1.00537 1.00932 0.87988 1.23996 0.90661 0.99594 1.04864 0.87991 1.21098 0.94719 0.87785 0.93206 1.46168 1.02538 1.22897 1.61098 1.19164 0.84708 1.02857 1.27415 0.90266 1.24760 0.97163 0.98118 1.01013 1.69503 1.21697 1.23098 1.42899 0.85946 0.81903 0.79508 0.77842 1.20564 1.21775 1.21749 1.22569 0.81762 0.91089 1.01572 1.24182 1.01024 0.96844 0.95287 0.87951 0.91409 0.92250 0.92828 0.84617 0.92314 0.91438 0.92848 0.77874 0.75348 0.91203 0.90863 0.93231 0.95884 0.93653 0.96690 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.05 37.16 0.34 -0.73 16 2 C -0.05 -0.50 3.12 -91.78 -0.29 -0.78 16 3 C -0.14 -1.09 9.16 37.16 0.34 -0.75 16 4 C -0.17 -1.67 5.03 -35.39 -0.18 -1.85 16 5 S 0.20 1.32 22.44 -107.50 -2.41 -1.09 16 6 C -0.01 -0.05 12.17 51.42 0.63 0.58 16 7 N -0.44 -4.82 10.14 -12.37 -0.13 -4.95 16 8 C -0.01 -0.07 6.70 -84.53 -0.57 -0.63 16 9 C 0.59 8.40 7.79 -12.59 -0.10 8.30 16 10 O -0.54 -8.52 13.86 5.25 0.07 -8.45 16 11 N -0.70 -9.50 5.55 -61.43 -0.34 -9.84 16 12 C 0.15 2.22 5.95 -4.04 -0.02 2.19 16 13 C -0.15 -2.50 5.38 -90.62 -0.49 -2.99 16 14 H 0.10 1.65 8.04 -51.93 -0.42 1.23 16 15 C -0.17 -3.14 6.74 -89.22 -0.60 -3.74 16 16 H 0.10 1.75 8.12 -51.93 -0.42 1.33 16 17 C 0.16 3.36 7.05 -2.41 -0.02 3.35 16 18 N -0.60 -15.64 3.46 -165.70 -0.57 -16.21 16 19 C -0.21 -5.98 10.42 -15.06 -0.16 -6.14 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.92 -26.89 10.12 55.49 0.56 -26.33 16 23 Si 0.92 22.16 29.55 -169.99 -5.02 17.13 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.15 3.74 6.43 -0.29 0.00 3.74 16 28 C -0.15 -3.00 6.76 -89.22 -0.60 -3.60 16 29 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.33 7.84 -51.93 -0.41 -0.08 16 33 H 0.14 1.64 4.94 -51.93 -0.26 1.38 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.20 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.41 5.18 7.93 -40.82 -0.32 4.86 16 39 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.14 3.67 5.34 -51.93 -0.28 3.39 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -31.94 379.46 -10.65 -42.59 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.71 Total: 5.04 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.81 Total: -3.60 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.48 Total: -57.33 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.41 Total: -1.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.94 -10.65 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978950530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.047 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds