Wall clock time and date at job start Tue Mar 31 2020 18:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47330 * 2 1 4 4 C 1.50696 * 109.47576 * 120.00948 * 2 1 3 5 5 S 1.70947 * 125.58288 * 305.32533 * 4 2 1 6 6 C 1.70769 * 91.12778 * 179.97438 * 5 4 2 7 7 N 1.28637 * 110.56122 * 359.76777 * 6 5 4 8 8 C 1.33560 * 115.76729 * 0.42016 * 7 6 5 9 9 C 1.47268 * 123.14399 * 179.82912 * 8 7 6 10 10 O 1.21629 * 119.99962 * 174.28058 * 9 8 7 11 11 N 1.34782 * 119.99845 * 354.28598 * 9 8 7 12 12 C 1.46501 * 119.99990 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.46993 * 179.97438 * 12 11 9 14 14 H 1.09000 * 115.51394 * 29.59323 * 13 12 11 15 15 C 1.52997 * 117.44408 * 244.24300 * 13 12 11 16 16 H 1.09001 * 119.53731 * 4.11707 * 15 13 12 17 17 C 1.54391 * 118.12570 * 160.81301 * 15 13 12 18 18 N 1.48143 * 104.61593 * 87.18719 * 17 15 13 19 19 C 1.36941 * 127.83355 * 140.41660 * 18 17 15 20 20 H 1.08000 * 120.00084 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99967 * 179.97438 * 19 18 17 22 22 N 1.31615 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00008 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47373 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46840 * 120.00069 * 23 21 19 26 26 H 1.48496 * 109.47214 * 239.99827 * 23 21 19 27 27 C 1.51826 * 104.55444 * 320.14568 * 18 17 15 28 28 C 1.53001 * 117.43873 * 175.00337 * 13 12 11 29 29 H 1.09003 * 119.54314 * 355.88668 * 28 13 12 30 30 H 1.08996 * 109.47374 * 59.99043 * 1 2 3 31 31 H 1.09003 * 109.47055 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46883 * 299.99163 * 1 2 3 33 33 H 1.09006 * 109.46883 * 240.00837 * 2 1 3 34 34 H 1.09000 * 109.47577 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47673 * 300.00774 * 3 2 1 36 36 H 1.09006 * 109.46454 * 60.00574 * 3 2 1 37 37 H 1.07997 * 124.71350 * 179.97438 * 6 5 4 38 38 H 0.96997 * 120.00034 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.46661 * 60.00423 * 12 11 9 40 40 H 1.08998 * 109.47109 * 300.00614 * 12 11 9 41 41 H 1.08997 * 110.40867 * 205.97523 * 17 15 13 42 42 H 1.09005 * 110.40372 * 328.40740 * 17 15 13 43 43 H 0.97009 * 120.00393 * 179.97438 * 22 21 19 44 44 H 1.09005 * 110.21911 * 281.99484 * 27 18 17 45 45 H 1.09001 * 112.26117 * 158.41880 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7106 1.2303 5 16 1.6062 -0.3314 2.8417 6 6 2.6017 -1.5853 3.4358 7 7 3.1756 -2.2047 2.4653 8 6 2.8937 -1.7527 1.2405 9 6 3.4630 -2.3387 0.0152 10 8 3.0883 -1.9512 -1.0751 11 7 4.3992 -3.3044 0.1021 12 6 4.9651 -3.8877 -1.1168 13 6 5.9978 -4.9522 -0.7408 14 1 5.8196 -5.4662 0.2037 15 6 7.4524 -4.6953 -1.1395 16 1 7.7217 -3.7497 -1.6099 17 6 8.5580 -5.4869 -0.4083 18 7 8.6890 -6.7451 -1.1793 19 6 9.8375 -7.4203 -1.4963 20 1 10.7948 -7.0391 -1.1727 21 6 9.7711 -8.5953 -2.2326 22 7 8.6045 -9.0600 -2.6264 23 14 11.3376 -9.5166 -2.6643 24 1 12.5079 -8.7915 -2.1076 25 1 11.2827 -10.8839 -2.0872 26 1 11.4675 -9.6074 -4.1408 27 6 7.2628 -7.1247 -1.5353 28 6 6.6202 -5.7636 -1.8789 29 1 6.2697 -5.6137 -2.9001 30 1 -0.3634 0.5140 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8898 36 1 1.6767 1.9562 0.8901 37 1 2.7290 -1.8269 4.4806 38 1 4.6976 -3.6137 0.9716 39 1 5.4471 -3.1058 -1.7038 40 1 4.1690 -4.3447 -1.7045 41 1 9.4962 -4.9322 -0.4238 42 1 8.2580 -5.6995 0.6178 43 1 8.5580 -9.8809 -3.1413 44 1 6.7662 -7.5730 -0.6746 45 1 7.2158 -7.7948 -2.3937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978950530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:01 Heat of formation + Delta-G solvation = 43.666751 kcal Electronic energy + Delta-G solvation = -25729.830157 eV Core-core repulsion = 22068.022826 eV Total energy + Delta-G solvation = -3661.807331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70650 -40.41856 -39.49763 -36.93721 -36.12874 -34.94670 -32.66074 -30.96724 -29.14668 -28.74808 -28.09182 -27.19686 -25.95587 -23.62315 -22.74434 -22.39891 -21.80458 -20.82260 -20.54152 -19.00217 -18.87917 -17.91254 -17.03012 -16.82786 -16.70576 -16.35911 -15.88210 -15.57227 -15.28589 -15.11242 -14.97966 -14.69033 -14.57359 -14.40676 -14.08312 -13.98312 -13.40469 -13.19867 -13.12175 -13.04746 -12.84633 -12.61080 -12.44765 -12.33945 -12.23154 -12.21351 -12.00535 -11.92784 -11.64646 -11.01961 -10.85459 -10.80139 -10.72287 -10.52729 -10.40327 -10.21947 -9.84936 -8.95854 -7.76220 -5.23492 -0.47568 0.27446 0.65529 0.93057 1.47116 1.48260 1.58452 2.09544 2.26881 2.48314 2.73346 3.13450 3.30892 3.56144 3.60718 3.64340 3.84476 3.86039 4.06944 4.16826 4.17801 4.24119 4.33399 4.40186 4.56932 4.58118 4.61452 4.67896 4.71237 4.87166 4.89269 4.91579 4.94576 5.00111 5.10848 5.18321 5.29574 5.30869 5.33267 5.44594 5.49199 5.52186 5.79224 6.25586 6.27268 6.58293 7.02423 7.07918 7.69534 8.44740 9.25301 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.001979 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.526928 B =14146.202905 C =14575.031021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.138 4.138 4 C -0.184 4.184 5 S 0.277 5.723 6 C -0.009 4.009 7 N -0.467 5.467 8 C -0.034 4.034 9 C 0.589 3.411 10 O -0.561 6.561 11 N -0.701 5.701 12 C 0.164 3.836 13 C -0.115 4.115 14 H 0.106 0.894 15 C -0.162 4.162 16 H 0.121 0.879 17 C 0.153 3.847 18 N -0.628 5.628 19 C -0.229 4.229 20 H 0.083 0.917 21 C -0.073 4.073 22 N -0.950 5.950 23 Si 0.984 3.016 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.153 3.847 28 C -0.168 4.168 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.239 0.761 38 H 0.415 0.585 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.030 0.970 43 H 0.248 0.752 44 H 0.002 0.998 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.798 22.824 13.021 32.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.195 4.195 4 C -0.309 4.309 5 S 0.534 5.466 6 C -0.308 4.308 7 N -0.181 5.181 8 C -0.168 4.168 9 C 0.374 3.626 10 O -0.441 6.441 11 N -0.351 5.351 12 C 0.041 3.959 13 C -0.134 4.134 14 H 0.124 0.876 15 C -0.182 4.182 16 H 0.139 0.861 17 C 0.028 3.972 18 N -0.353 5.353 19 C -0.358 4.358 20 H 0.101 0.899 21 C -0.264 4.264 22 N -0.600 5.600 23 Si 0.812 3.188 24 H -0.191 1.191 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.029 3.971 28 C -0.188 4.188 29 H 0.127 0.873 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.255 0.745 38 H 0.252 0.748 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.020 0.980 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.128 23.114 12.783 32.612 hybrid contribution 1.522 -1.648 -0.747 2.364 sum -17.606 21.466 12.035 30.259 Atomic orbital electron populations 1.21887 0.92240 1.02060 1.03541 1.20280 0.97163 0.96453 0.93831 1.21855 1.00676 0.93530 1.03488 1.25962 1.00950 1.00129 1.03842 1.82508 1.40871 1.30744 0.92525 1.28970 0.99411 0.97810 1.04581 1.66932 1.24182 1.28910 0.98086 1.20150 1.04423 0.99993 0.92202 1.17401 0.78895 0.79076 0.87216 1.90652 1.62164 1.62585 1.28748 1.45809 1.40267 1.38221 1.10836 1.20749 0.94770 0.94174 0.86247 1.22421 0.92434 0.99201 0.99353 0.87613 1.23945 0.90790 0.99324 1.04143 0.86136 1.21247 0.96181 0.86565 0.93231 1.46488 1.02500 1.24387 1.61951 1.19530 0.85768 1.03295 1.27172 0.89887 1.25622 1.00200 0.99196 1.01431 1.69771 1.23500 1.23199 1.43544 0.84920 0.78794 0.77915 0.77156 1.19118 1.21955 1.21870 1.22303 0.81917 0.93157 0.99676 1.23870 1.03286 0.94791 0.96856 0.87324 0.90483 0.93326 0.91003 0.87750 0.93724 0.90508 0.91039 0.74539 0.74782 0.91093 0.90950 0.92580 0.95237 0.94196 0.97986 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.05 71.98 0.65 -1.20 16 2 C -0.06 -1.02 3.12 -11.54 -0.04 -1.05 16 3 C -0.14 -1.92 9.16 71.98 0.66 -1.26 16 4 C -0.18 -3.44 5.03 24.98 0.13 -3.31 16 5 S 0.28 2.83 22.44 -56.49 -1.27 1.57 16 6 C -0.01 -0.11 12.17 130.71 1.59 1.48 16 7 N -0.47 -9.62 10.14 -193.04 -1.96 -11.58 16 8 C -0.03 -0.79 6.70 40.56 0.27 -0.52 16 9 C 0.59 16.69 7.79 86.62 0.67 17.36 16 10 O -0.56 -18.27 13.86 -4.12 -0.06 -18.33 16 11 N -0.70 -18.59 5.55 -466.51 -2.59 -21.18 16 12 C 0.16 4.59 5.95 86.38 0.51 5.11 16 13 C -0.12 -3.60 5.38 -10.80 -0.06 -3.66 16 14 H 0.11 3.30 8.04 -2.39 -0.02 3.28 16 15 C -0.16 -5.78 6.74 -9.89 -0.07 -5.85 16 16 H 0.12 3.89 8.12 -2.39 -0.02 3.87 16 17 C 0.15 6.43 7.05 86.54 0.61 7.04 16 18 N -0.63 -33.11 3.46 -678.16 -2.35 -35.45 16 19 C -0.23 -13.02 10.42 84.03 0.88 -12.14 16 20 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 22 N -0.95 -57.08 10.12 21.65 0.22 -56.86 16 23 Si 0.98 46.16 29.55 68.60 2.03 48.18 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 C 0.15 7.69 6.43 85.80 0.55 8.24 16 28 C -0.17 -6.59 6.76 -9.89 -0.07 -6.66 16 29 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.67 7.84 -2.38 -0.02 0.65 16 33 H 0.10 2.59 4.94 -2.38 -0.01 2.58 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.24 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.42 10.17 7.93 -92.71 -0.74 9.43 16 39 H 0.07 2.02 7.94 -2.38 -0.02 2.00 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 44 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 45 H 0.10 5.90 5.34 -2.39 -0.01 5.88 16 Total: -1.00 -71.45 379.46 1.06 -70.39 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.27 Total: 23.37 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 6.76 Total: -0.11 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -6.68 Total: -125.08 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.33 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.27 Total: 1.57 kcal Total: -71.45 1.06 -70.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978950530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.055 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds