Wall clock time and date at job start Tue Mar 31 2020 18:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47057 * 2 1 4 4 N 1.30937 * 122.90802 * 270.19336 * 3 2 1 5 5 C 1.29425 * 117.36636 * 180.30695 * 4 3 2 6 6 S 1.70949 * 110.39194 * 359.73092 * 5 4 3 7 7 C 1.35664 * 122.90305 * 90.00200 * 3 2 1 8 8 C 1.46684 * 126.13097 * 0.02562 * 7 3 2 9 9 O 1.21686 * 119.99752 * 359.70763 * 8 7 3 10 10 N 1.34777 * 119.99918 * 179.71186 * 8 7 3 11 11 C 1.46507 * 119.99779 * 179.97438 * 10 8 7 12 12 C 1.51221 * 111.07431 * 78.36411 * 11 10 8 13 13 C 1.56583 * 104.17525 * 84.75801 * 12 11 10 14 14 C 1.56279 * 106.06903 * 6.57554 * 13 12 11 15 15 C 1.50511 * 101.75910 * 24.68072 * 14 13 12 16 16 H 1.09002 * 107.74427 * 66.77026 * 15 14 13 17 17 N 1.42700 * 128.17244 * 198.67066 * 15 14 13 18 18 C 1.36940 * 127.10268 * 331.69813 * 17 15 14 19 19 H 1.08003 * 119.99726 * 8.14436 * 18 17 15 20 20 C 1.38807 * 119.99959 * 188.14673 * 18 17 15 21 21 N 1.31621 * 120.00230 * 7.95964 * 20 18 17 22 22 Si 1.86804 * 120.00008 * 187.95853 * 20 18 17 23 23 H 1.48500 * 109.46872 * 94.78178 * 22 20 18 24 24 H 1.48493 * 109.47415 * 214.78109 * 22 20 18 25 25 H 1.48501 * 109.47122 * 334.78774 * 22 20 18 26 26 C 1.49293 * 105.79561 * 151.73626 * 17 15 14 27 27 C 1.52141 * 111.09139 * 298.98638 * 11 10 8 28 28 H 1.08996 * 109.47295 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46645 * 299.99797 * 1 2 3 30 30 H 1.08995 * 109.47371 * 59.99745 * 1 2 3 31 31 H 1.08995 * 109.46992 * 239.99779 * 2 1 3 32 32 H 1.09004 * 109.47149 * 120.00395 * 2 1 3 33 33 H 1.08000 * 124.80674 * 179.69610 * 5 4 3 34 34 H 0.97001 * 120.00196 * 359.72355 * 10 8 7 35 35 H 1.08995 * 110.40928 * 202.67366 * 12 11 10 36 36 H 1.09000 * 110.40945 * 325.11125 * 12 11 10 37 37 H 1.09007 * 109.73738 * 247.60458 * 13 12 11 38 38 H 1.08998 * 110.50889 * 125.96224 * 13 12 11 39 39 H 1.08998 * 110.96942 * 266.56155 * 14 13 12 40 40 H 1.09009 * 110.97063 * 142.79812 * 14 13 12 41 41 H 0.97000 * 119.99785 * 180.02562 * 21 20 18 42 42 H 1.09000 * 110.04819 * 232.07732 * 26 17 15 43 43 H 1.08997 * 110.05137 * 110.60447 * 26 17 15 44 44 H 1.09004 * 111.15319 * 43.91457 * 27 11 10 45 45 H 1.08995 * 111.14723 * 168.14144 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2659 2.0927 -1.0993 5 6 2.7015 3.3051 -0.9743 6 16 2.8521 3.7165 0.6781 7 6 2.2780 2.1156 1.1390 8 6 2.1036 1.6206 2.5087 9 8 1.6984 0.4891 2.6998 10 7 2.3920 2.4189 3.5556 11 6 2.2173 1.9246 4.9237 12 6 3.3634 1.0243 5.3271 13 6 4.4671 2.0125 5.8342 14 6 3.8074 3.4292 5.8451 15 6 2.3478 3.0869 5.9784 16 1 2.1993 2.6426 6.9626 17 7 1.2188 3.9094 5.6868 18 6 1.1563 5.2763 5.7418 19 1 2.0560 5.8519 5.9021 20 6 -0.0633 5.9219 5.5917 21 7 -1.1778 5.2227 5.5536 22 14 -0.1228 7.7831 5.4438 23 1 -0.1406 8.1653 4.0089 24 1 -1.3494 8.2935 6.1071 25 1 1.0743 8.3702 6.0975 26 6 0.1195 2.9721 5.3102 27 6 0.7659 1.5548 5.1910 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.9371 3.9634 -1.7974 34 1 2.7188 3.3194 3.4033 35 1 3.0591 0.3614 6.1370 36 1 3.7115 0.4457 4.4715 37 1 5.3159 1.9986 5.1504 38 1 4.7904 1.7409 6.8391 39 1 4.0006 3.9567 4.9110 40 1 4.1508 4.0129 6.6992 41 1 -2.0300 5.6740 5.4483 42 1 -0.3122 3.2675 4.3539 43 1 -0.6495 2.9684 6.0826 44 1 0.3416 0.9980 4.3555 45 1 0.6672 0.9980 6.1228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991002060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:51 Heat of formation + Delta-G solvation = 45.825622 kcal Electronic energy + Delta-G solvation = -28265.331836 eV Core-core repulsion = 24603.618121 eV Total energy + Delta-G solvation = -3661.713715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.68646 -39.91625 -37.89651 -34.47147 -33.46660 -33.03898 -31.82744 -30.30561 -29.28624 -26.99444 -26.30154 -25.59147 -24.07641 -23.21729 -22.07444 -20.57601 -19.82988 -19.13865 -19.02955 -18.08907 -16.72243 -16.50531 -15.80994 -15.30629 -15.14918 -14.62041 -14.50473 -14.26244 -14.07912 -13.95732 -13.93379 -13.44502 -13.32913 -12.61440 -12.38132 -12.34008 -12.04980 -11.85826 -11.46878 -11.42283 -11.23822 -11.04574 -10.92202 -10.88855 -10.77557 -10.53687 -10.30005 -10.09519 -10.04437 -9.93434 -9.74560 -9.62199 -9.51112 -9.16162 -8.88493 -8.69484 -8.53768 -6.88431 -5.80382 -3.14476 0.28973 1.22027 1.60180 2.51230 3.34102 3.37867 3.39814 3.42306 3.49693 4.11298 4.40916 4.56411 4.92087 4.99004 5.10269 5.15764 5.23012 5.42158 5.48206 5.53586 5.56831 5.57614 5.66834 5.77253 5.87652 5.91662 6.02941 6.06153 6.08872 6.18153 6.23943 6.30791 6.33041 6.36507 6.41456 6.45757 6.63068 6.79190 6.84042 7.08977 7.45280 7.56353 7.57789 7.71223 7.88675 8.14794 8.50641 9.07850 9.75383 10.45089 11.33150 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.005021 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.980548 B = 5574.686285 C = 6537.880250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.057 4.057 3 C 0.137 3.863 4 N -0.475 5.475 5 C 0.022 3.978 6 S 0.172 5.828 7 C -0.281 4.281 8 C 0.595 3.405 9 O -0.526 6.526 10 N -0.682 5.682 11 C 0.131 3.869 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.116 4.116 15 C 0.160 3.840 16 H 0.024 0.976 17 N -0.582 5.582 18 C -0.235 4.235 19 H 0.078 0.922 20 C -0.002 4.002 21 N -0.914 5.914 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.180 3.820 27 C -0.141 4.141 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.203 0.797 34 H 0.398 0.602 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.253 0.747 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.948 -6.651 -8.489 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.096 4.096 3 C -0.001 4.001 4 N -0.188 5.188 5 C -0.273 4.273 6 S 0.427 5.573 7 C -0.405 4.405 8 C 0.380 3.620 9 O -0.406 6.406 10 N -0.332 5.332 11 C 0.043 3.957 12 C -0.150 4.150 13 C -0.155 4.155 14 C -0.155 4.155 15 C 0.049 3.951 16 H 0.041 0.959 17 N -0.305 5.305 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.199 4.199 21 N -0.560 5.560 22 Si 0.737 3.263 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.057 3.943 27 C -0.180 4.180 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.219 0.781 34 H 0.234 0.766 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.735 -6.465 -8.340 14.357 hybrid contribution -0.303 0.975 -0.349 1.079 sum 9.431 -5.490 -8.690 13.950 Atomic orbital electron populations 1.21597 0.93915 1.01946 1.01994 1.20383 0.96719 0.88345 1.04179 1.20691 0.96131 0.98309 0.84950 1.66089 1.15108 1.06187 1.31446 1.28648 1.01834 0.96134 1.00672 1.84211 1.57857 1.12489 1.02749 1.25710 1.16740 0.98419 0.99658 1.16604 0.77996 0.85305 0.82127 1.90728 1.46624 1.18461 1.84767 1.45605 1.65852 1.16576 1.05155 1.21618 0.94775 0.97538 0.81745 1.22048 0.95167 0.97063 1.00762 1.22972 0.97582 0.94361 1.00616 1.21859 0.95878 0.96122 1.01641 1.20802 0.89184 0.90460 0.94642 0.95887 1.43625 1.06165 1.01817 1.78915 1.18979 0.93470 0.79851 1.43948 0.90377 1.24802 0.95271 0.97825 1.01999 1.69939 0.96942 1.33780 1.55328 0.86194 0.77151 0.85329 0.77659 1.21640 1.21742 1.20543 1.21921 0.89654 0.83236 0.99523 1.22823 0.94053 0.99694 1.01401 0.92009 0.92088 0.93133 0.90805 0.87652 0.78058 0.76618 0.90936 0.91477 0.92278 0.91722 0.91934 0.91492 0.93652 0.93943 0.93163 0.90396 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 37.16 0.37 -1.45 16 2 C -0.06 -0.77 5.74 -27.88 -0.16 -0.93 16 3 C 0.14 2.05 6.04 -83.90 -0.51 1.54 16 4 N -0.47 -6.62 10.50 -11.54 -0.12 -6.74 16 5 C 0.02 0.25 12.22 51.75 0.63 0.88 16 6 S 0.17 2.16 22.35 -107.50 -2.40 -0.24 16 7 C -0.28 -4.36 6.48 -37.09 -0.24 -4.60 16 8 C 0.60 10.29 7.17 -12.85 -0.09 10.19 16 9 O -0.53 -9.77 12.38 5.20 0.06 -9.70 16 10 N -0.68 -11.81 4.48 -47.86 -0.21 -12.02 16 11 C 0.13 2.31 0.42 -130.70 -0.06 2.25 16 12 C -0.11 -1.66 6.24 -25.70 -0.16 -1.82 16 13 C -0.12 -1.56 6.95 -23.04 -0.16 -1.72 16 14 C -0.12 -1.85 6.46 -26.21 -0.17 -2.02 16 15 C 0.16 3.10 2.65 -68.73 -0.18 2.91 16 16 H 0.02 0.48 7.98 -51.93 -0.41 0.07 16 17 N -0.58 -13.83 3.16 -162.69 -0.51 -14.34 16 18 C -0.23 -6.11 10.26 -15.06 -0.15 -6.27 16 19 H 0.08 1.96 7.84 -52.48 -0.41 1.55 16 20 C 0.00 -0.04 5.45 -17.43 -0.10 -0.14 16 21 N -0.91 -26.16 10.80 55.49 0.60 -25.56 16 22 Si 0.91 21.32 29.56 -169.99 -5.03 16.29 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.18 4.28 5.28 -0.76 0.00 4.28 16 27 C -0.14 -2.76 6.10 -25.43 -0.16 -2.91 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.11 1.55 6.01 -51.93 -0.31 1.24 16 33 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.40 6.87 6.73 -40.82 -0.27 6.60 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 37 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.99 7.16 -51.93 -0.37 0.62 16 40 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.04 1.12 7.76 -51.93 -0.40 0.72 16 43 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 44 H 0.08 1.57 6.27 -51.93 -0.33 1.25 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -30.13 366.58 -9.89 -40.03 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.67 Total: 6.57 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.14 Total: 0.20 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.25 Total: -58.67 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.06 Total: -9.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.40 Total: -0.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.13 -9.89 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991002060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.851 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds