Wall clock time and date at job start Tue Mar 31 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47057 * 2 1 4 4 N 1.30937 * 122.90802 * 270.19336 * 3 2 1 5 5 C 1.29425 * 117.36636 * 180.30695 * 4 3 2 6 6 S 1.70949 * 110.39194 * 359.73092 * 5 4 3 7 7 C 1.35664 * 122.90305 * 90.00200 * 3 2 1 8 8 C 1.46684 * 126.13097 * 0.02562 * 7 3 2 9 9 O 1.21686 * 119.99752 * 359.70763 * 8 7 3 10 10 N 1.34777 * 119.99918 * 179.71186 * 8 7 3 11 11 C 1.46507 * 119.99779 * 179.97438 * 10 8 7 12 12 C 1.51221 * 111.07431 * 78.36411 * 11 10 8 13 13 C 1.56583 * 104.17525 * 84.75801 * 12 11 10 14 14 C 1.56279 * 106.06903 * 6.57554 * 13 12 11 15 15 C 1.50511 * 101.75910 * 24.68072 * 14 13 12 16 16 H 1.09002 * 107.74427 * 66.77026 * 15 14 13 17 17 N 1.42700 * 128.17244 * 198.67066 * 15 14 13 18 18 C 1.36940 * 127.10268 * 331.69813 * 17 15 14 19 19 H 1.08003 * 119.99726 * 8.14436 * 18 17 15 20 20 C 1.38807 * 119.99959 * 188.14673 * 18 17 15 21 21 N 1.31621 * 120.00230 * 7.95964 * 20 18 17 22 22 Si 1.86804 * 120.00008 * 187.95853 * 20 18 17 23 23 H 1.48500 * 109.46872 * 94.78178 * 22 20 18 24 24 H 1.48493 * 109.47415 * 214.78109 * 22 20 18 25 25 H 1.48501 * 109.47122 * 334.78774 * 22 20 18 26 26 C 1.49293 * 105.79561 * 151.73626 * 17 15 14 27 27 C 1.52141 * 111.09139 * 298.98638 * 11 10 8 28 28 H 1.08996 * 109.47295 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46645 * 299.99797 * 1 2 3 30 30 H 1.08995 * 109.47371 * 59.99745 * 1 2 3 31 31 H 1.08995 * 109.46992 * 239.99779 * 2 1 3 32 32 H 1.09004 * 109.47149 * 120.00395 * 2 1 3 33 33 H 1.08000 * 124.80674 * 179.69610 * 5 4 3 34 34 H 0.97001 * 120.00196 * 359.72355 * 10 8 7 35 35 H 1.08995 * 110.40928 * 202.67366 * 12 11 10 36 36 H 1.09000 * 110.40945 * 325.11125 * 12 11 10 37 37 H 1.09007 * 109.73738 * 247.60458 * 13 12 11 38 38 H 1.08998 * 110.50889 * 125.96224 * 13 12 11 39 39 H 1.08998 * 110.96942 * 266.56155 * 14 13 12 40 40 H 1.09009 * 110.97063 * 142.79812 * 14 13 12 41 41 H 0.97000 * 119.99785 * 180.02562 * 21 20 18 42 42 H 1.09000 * 110.04819 * 232.07732 * 26 17 15 43 43 H 1.08997 * 110.05137 * 110.60447 * 26 17 15 44 44 H 1.09004 * 111.15319 * 43.91457 * 27 11 10 45 45 H 1.08995 * 111.14723 * 168.14144 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2659 2.0927 -1.0993 5 6 2.7015 3.3051 -0.9743 6 16 2.8521 3.7165 0.6781 7 6 2.2780 2.1156 1.1390 8 6 2.1036 1.6206 2.5087 9 8 1.6984 0.4891 2.6998 10 7 2.3920 2.4189 3.5556 11 6 2.2173 1.9246 4.9237 12 6 3.3634 1.0243 5.3271 13 6 4.4671 2.0125 5.8342 14 6 3.8074 3.4292 5.8451 15 6 2.3478 3.0869 5.9784 16 1 2.1993 2.6426 6.9626 17 7 1.2188 3.9094 5.6868 18 6 1.1563 5.2763 5.7418 19 1 2.0560 5.8519 5.9021 20 6 -0.0633 5.9219 5.5917 21 7 -1.1778 5.2227 5.5536 22 14 -0.1228 7.7831 5.4438 23 1 -0.1406 8.1653 4.0089 24 1 -1.3494 8.2935 6.1071 25 1 1.0743 8.3702 6.0975 26 6 0.1195 2.9721 5.3102 27 6 0.7659 1.5548 5.1910 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.9371 3.9634 -1.7974 34 1 2.7188 3.3194 3.4033 35 1 3.0591 0.3614 6.1370 36 1 3.7115 0.4457 4.4715 37 1 5.3159 1.9986 5.1504 38 1 4.7904 1.7409 6.8391 39 1 4.0006 3.9567 4.9110 40 1 4.1508 4.0129 6.6992 41 1 -2.0300 5.6740 5.4483 42 1 -0.3122 3.2675 4.3539 43 1 -0.6495 2.9684 6.0826 44 1 0.3416 0.9980 4.3555 45 1 0.6672 0.9980 6.1228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991002060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:50 Heat of formation + Delta-G solvation = 27.430769 kcal Electronic energy + Delta-G solvation = -28266.129497 eV Core-core repulsion = 24603.618121 eV Total energy + Delta-G solvation = -3662.511376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.06743 -41.08486 -39.25987 -36.17372 -34.64031 -34.29312 -33.65384 -31.87342 -30.56060 -28.55954 -27.57435 -26.87367 -25.93110 -24.27391 -23.36513 -22.17641 -21.30602 -20.46083 -20.36605 -19.20046 -18.35612 -17.91304 -17.37242 -16.59139 -16.45966 -16.16494 -15.79133 -15.70025 -15.62863 -15.24238 -15.06121 -14.78027 -14.49822 -14.15906 -14.04830 -13.65211 -13.38249 -13.05853 -13.01209 -12.94988 -12.82874 -12.64081 -12.35234 -12.13696 -12.12450 -12.04855 -11.86609 -11.79656 -11.56625 -11.37431 -11.21015 -10.90316 -10.72198 -10.60332 -10.56527 -10.01772 -9.83601 -8.86182 -7.86448 -5.21418 -0.76420 0.19609 0.58267 1.41738 1.46820 1.47055 1.56367 2.07915 2.21359 2.49697 3.07045 3.15451 3.33962 3.70084 3.81167 3.86491 3.99753 4.08592 4.09499 4.27709 4.36679 4.40011 4.41448 4.46429 4.54457 4.57519 4.62231 4.79342 4.93820 4.94766 4.96314 5.02199 5.07651 5.10783 5.21872 5.23379 5.27997 5.34038 5.42298 5.54036 5.59320 5.66163 5.73520 6.16923 6.45790 6.59422 7.02537 7.16813 7.76075 8.49468 9.27081 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.005021 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.980548 B = 5574.686285 C = 6537.880250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 C 0.138 3.862 4 N -0.496 5.496 5 C 0.047 3.953 6 S 0.187 5.813 7 C -0.319 4.319 8 C 0.593 3.407 9 O -0.546 6.546 10 N -0.685 5.685 11 C 0.140 3.860 12 C -0.107 4.107 13 C -0.103 4.103 14 C -0.112 4.112 15 C 0.146 3.854 16 H 0.018 0.982 17 N -0.595 5.595 18 C -0.232 4.232 19 H 0.089 0.911 20 C -0.062 4.062 21 N -0.951 5.951 22 Si 0.970 3.030 23 H -0.288 1.288 24 H -0.302 1.302 25 H -0.263 1.263 26 C 0.195 3.805 27 C -0.130 4.130 28 H 0.079 0.921 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.247 0.753 34 H 0.398 0.602 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.245 0.755 42 H 0.003 0.997 43 H 0.013 0.987 44 H 0.069 0.931 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.722 -6.321 -9.550 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.096 4.096 3 C -0.001 4.001 4 N -0.210 5.210 5 C -0.248 4.248 6 S 0.443 5.557 7 C -0.443 4.443 8 C 0.379 3.621 9 O -0.427 6.427 10 N -0.334 5.334 11 C 0.052 3.948 12 C -0.146 4.146 13 C -0.141 4.141 14 C -0.151 4.151 15 C 0.037 3.963 16 H 0.035 0.965 17 N -0.318 5.318 18 C -0.360 4.360 19 H 0.107 0.893 20 C -0.256 4.256 21 N -0.599 5.599 22 Si 0.799 3.201 23 H -0.215 1.215 24 H -0.229 1.229 25 H -0.187 1.187 26 C 0.070 3.930 27 C -0.169 4.169 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.263 0.737 34 H 0.234 0.766 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.031 0.969 44 H 0.087 0.913 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.566 -6.137 -9.391 16.845 hybrid contribution -1.172 0.880 -0.069 1.467 sum 11.394 -5.257 -9.460 15.715 Atomic orbital electron populations 1.21533 0.93857 1.02754 1.00631 1.20379 0.96669 0.88194 1.04345 1.20904 0.95252 0.98731 0.85172 1.66162 1.16654 1.07272 1.30866 1.29450 0.98607 0.95527 1.01193 1.84125 1.57430 1.10644 1.03524 1.25574 1.19453 1.00485 0.98834 1.16834 0.77347 0.85034 0.82839 1.90703 1.47425 1.19273 1.85321 1.45603 1.66138 1.16619 1.05087 1.21579 0.94254 0.97228 0.81717 1.22052 0.94278 0.97072 1.01154 1.22909 0.97109 0.91640 1.02400 1.21885 0.93088 0.98119 1.01984 1.21040 0.90132 0.90427 0.94678 0.96493 1.43749 1.07671 1.01589 1.78803 1.19387 0.93601 0.81168 1.41864 0.89280 1.25599 0.95125 1.01949 1.02902 1.70154 0.97162 1.35159 1.57443 0.85184 0.77065 0.80505 0.77392 1.21546 1.22883 1.18700 1.21563 0.89529 0.85809 0.96089 1.22664 0.95536 0.96871 1.01787 0.90183 0.94988 0.92753 0.89044 0.88926 0.73666 0.76647 0.89848 0.91445 0.90237 0.89556 0.91879 0.90802 0.94619 0.97836 0.96878 0.91278 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.89 71.98 0.71 -2.75 16 2 C -0.06 -1.52 5.74 29.85 0.17 -1.35 16 3 C 0.14 4.02 6.04 42.09 0.25 4.27 16 4 N -0.50 -12.84 10.50 -190.41 -2.00 -14.84 16 5 C 0.05 0.92 12.22 130.60 1.60 2.52 16 6 S 0.19 4.41 22.35 -56.49 -1.26 3.14 16 7 C -0.32 -9.80 6.48 23.88 0.15 -9.65 16 8 C 0.59 20.71 7.17 86.45 0.62 21.33 16 9 O -0.55 -20.66 12.38 -4.30 -0.05 -20.72 16 10 N -0.68 -23.66 4.48 -423.55 -1.90 -25.56 16 11 C 0.14 4.87 0.42 4.32 0.00 4.87 16 12 C -0.11 -2.95 6.24 31.26 0.20 -2.76 16 13 C -0.10 -2.38 6.95 32.99 0.23 -2.15 16 14 C -0.11 -3.32 6.46 30.93 0.20 -3.12 16 15 C 0.15 5.59 2.65 46.47 0.12 5.71 16 16 H 0.02 0.70 7.98 -2.39 -0.02 0.68 16 17 N -0.60 -28.84 3.16 -668.63 -2.11 -30.95 16 18 C -0.23 -12.16 10.26 84.03 0.86 -11.30 16 19 H 0.09 4.40 7.84 -2.91 -0.02 4.37 16 20 C -0.06 -3.44 5.45 84.86 0.46 -2.98 16 21 N -0.95 -56.92 10.80 21.65 0.23 -56.69 16 22 Si 0.97 44.37 29.56 68.60 2.03 46.40 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 26 C 0.19 9.74 5.28 86.96 0.46 10.20 16 27 C -0.13 -5.22 6.10 31.43 0.19 -5.03 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.75 6.01 -2.38 -0.01 2.73 16 33 H 0.25 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.40 13.62 6.73 -92.71 -0.62 13.00 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 1.90 7.73 -2.39 -0.02 1.88 16 37 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 1.86 7.16 -2.39 -0.02 1.84 16 40 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 42 H 0.00 0.19 7.76 -2.39 -0.02 0.17 16 43 H 0.01 0.74 7.51 -2.39 -0.02 0.72 16 44 H 0.07 2.91 6.27 -2.39 -0.01 2.89 16 45 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -68.26 366.58 1.56 -66.71 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.38 Total: 24.68 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.23 Total: 7.83 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -5.77 Total: -128.04 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.26 Total: 3.14 kcal Total: -68.26 1.56 -66.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991002060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.138 kcal (2) G-P(sol) polarization free energy of solvation -68.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds