Wall clock time and date at job start Tue Mar 31 2020 18:14:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50699 * 109.46866 * 2 1
4 4 N 1.29433 * 124.80491 * 89.69483 * 3 2 1
5 5 C 1.30940 * 117.36399 * 179.76608 * 4 3 2
6 6 C 1.35666 * 114.18912 * 0.52073 * 5 4 3
7 7 C 1.46683 * 126.12832 * 179.73153 * 6 5 4
8 8 O 1.21690 * 120.00428 * 0.02562 * 7 6 5
9 9 N 1.34780 * 119.99998 * 180.02562 * 7 6 5
10 10 C 1.46502 * 120.00052 * 179.97438 * 9 7 6
11 11 C 1.53582 * 112.23994 * 300.34991 * 10 9 7
12 12 C 1.54176 * 106.69626 * 237.98132 * 11 10 9
13 13 C 1.54759 * 104.36613 * 335.86889 * 12 11 10
14 14 C 1.54768 * 103.21169 * 37.32863 * 13 12 11
15 15 H 1.09001 * 111.86758 * 84.92114 * 14 13 12
16 16 N 1.46975 * 109.49037 * 209.44892 * 14 13 12
17 17 C 1.36942 * 125.58096 * 294.54554 * 16 14 13
18 18 H 1.08001 * 119.99609 * 359.97438 * 17 16 14
19 19 C 1.38809 * 120.00121 * 179.97438 * 17 16 14
20 20 N 1.31609 * 120.00210 * 359.97438 * 19 17 16
21 21 Si 1.86801 * 119.99623 * 180.02562 * 19 17 16
22 22 H 1.48492 * 109.47557 * 359.97438 * 21 19 17
23 23 H 1.48496 * 109.47151 * 120.00020 * 21 19 17
24 24 H 1.48501 * 109.46722 * 239.99644 * 21 19 17
25 25 C 1.47365 * 108.84456 * 114.50263 * 16 14 13
26 26 C 1.54918 * 112.33402 * 64.35464 * 10 9 7
27 27 S 1.70957 * 124.80325 * 269.99799 * 3 2 1
28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3
29 29 H 1.08993 * 109.46955 * 300.00219 * 1 2 3
30 30 H 1.09000 * 109.47050 * 60.00048 * 1 2 3
31 31 H 1.09000 * 109.47050 * 119.99952 * 2 1 3
32 32 H 1.09001 * 109.46801 * 240.00064 * 2 1 3
33 33 H 1.07999 * 122.90589 * 180.25084 * 5 4 3
34 34 H 0.96994 * 119.99804 * 359.97438 * 9 7 6
35 35 H 1.08999 * 110.02079 * 358.13484 * 11 10 9
36 36 H 1.09006 * 110.01844 * 119.52449 * 11 10 9
37 37 H 1.09000 * 110.80353 * 216.92420 * 12 11 10
38 38 H 1.09003 * 110.09582 * 94.45945 * 12 11 10
39 39 H 1.09001 * 110.66939 * 278.89470 * 13 12 11
40 40 H 1.08996 * 110.81062 * 155.83081 * 13 12 11
41 41 H 0.97003 * 120.00256 * 180.02562 * 20 19 17
42 42 H 1.09005 * 110.36816 * 94.14541 * 25 16 14
43 43 H 1.09000 * 110.37680 * 216.36546 * 25 16 14
44 44 H 1.09000 * 110.96799 * 204.33128 * 26 10 9
45 45 H 1.09005 * 110.96774 * 328.09727 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2732 2.1193 1.0628
5 6 2.7113 3.3415 0.8932
6 6 2.8416 3.7101 -0.4059
7 6 3.3028 5.0147 -0.8926
8 8 3.6112 5.8854 -0.1004
9 7 3.3852 5.2491 -2.2173
10 6 3.8453 6.5523 -2.7034
11 6 2.9507 7.7026 -2.2183
12 6 2.4286 8.4198 -3.4793
13 6 3.4776 8.0927 -4.5691
14 6 3.8722 6.6300 -4.2526
15 1 3.1852 5.9166 -4.7078
16 7 5.2610 6.3950 -4.6725
17 6 5.7181 6.4193 -5.9631
18 1 5.0350 6.6242 -6.7741
19 6 7.0595 6.1805 -6.2289
20 7 7.8920 5.9312 -5.2405
21 14 7.6831 6.2143 -7.9894
22 1 6.5561 6.5155 -8.9082
23 1 8.7263 7.2624 -8.1249
24 1 8.2627 4.8914 -8.3347
25 6 6.0812 6.1299 -3.4773
26 6 5.3170 6.8397 -2.3142
27 16 2.3576 2.3408 -1.4038
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 1.8934 -0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 2.9443 4.0007 1.7163
34 1 3.1397 4.5550 -2.8488
35 1 2.1232 7.3085 -1.6284
36 1 3.5347 8.4031 -1.6212
37 1 2.3703 9.4959 -3.3164
38 1 1.4522 8.0235 -3.7582
39 1 4.3414 8.7518 -4.4818
40 1 3.0383 8.1661 -5.5639
41 1 8.8294 5.7647 -5.4262
42 1 6.1571 5.0571 -3.2995
43 1 7.0736 6.5655 -3.5937
44 1 5.5112 7.9119 -2.2879
45 1 5.5656 6.3761 -1.3594
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000992551751.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:14:22
Heat of formation + Delta-G solvation = 30.369913 kcal
Electronic energy + Delta-G solvation = -27131.047659 eV
Core-core repulsion = 23468.663734 eV
Total energy + Delta-G solvation = -3662.383925 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.43909 -39.74789 -37.98641 -34.32967 -34.27009 -33.52452 -31.48625 -30.36323
-29.37358 -26.77797 -26.57764 -25.68592 -23.89262 -23.25767 -22.17097 -20.52471
-20.03803 -19.28452 -18.84273 -18.28006 -17.09245 -16.79279 -15.71957 -15.43470
-15.24839 -14.95513 -14.70137 -14.54641 -14.14069 -13.93946 -13.72550 -13.53829
-13.19315 -12.83586 -12.62079 -12.24637 -12.10765 -11.86890 -11.80800 -11.63286
-11.54860 -11.17792 -11.01894 -10.88056 -10.73362 -10.57641 -10.23756 -10.12001
-10.04444 -9.94908 -9.80465 -9.67435 -9.63621 -9.48423 -9.08663 -8.69903
-8.62122 -6.89067 -5.67108 -3.10852 0.11468 1.00079 1.42605 2.36845
3.21432 3.28586 3.37218 3.42860 3.45317 3.80877 4.44715 4.56377
4.72328 4.80204 4.82480 4.98665 5.12671 5.16432 5.26443 5.29021
5.42777 5.49317 5.54452 5.61511 5.76689 5.78002 5.82818 5.94798
5.96126 6.04250 6.11509 6.19237 6.31270 6.37340 6.50815 6.55819
6.73402 6.74349 6.93562 7.05968 7.41743 7.51035 7.61756 7.66148
7.84763 8.29885 8.34006 9.18581 9.79481 10.43369 11.35254
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.013842 B = 0.003369 C = 0.003016
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2022.344857 B = 8308.186090 C = 9280.688223
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.051 4.051
3 C 0.055 3.945
4 N -0.478 5.478
5 C 0.114 3.886
6 C -0.284 4.284
7 C 0.594 3.406
8 O -0.522 6.522
9 N -0.697 5.697
10 C 0.160 3.840
11 C -0.111 4.111
12 C -0.124 4.124
13 C -0.129 4.129
14 C 0.162 3.838
15 H 0.045 0.955
16 N -0.595 5.595
17 C -0.220 4.220
18 H 0.078 0.922
19 C -0.010 4.010
20 N -0.920 5.920
21 Si 0.913 3.087
22 H -0.280 1.280
23 H -0.291 1.291
24 H -0.291 1.291
25 C 0.152 3.848
26 C -0.142 4.142
27 S 0.169 5.831
28 H 0.069 0.931
29 H 0.062 0.938
30 H 0.059 0.941
31 H 0.097 0.903
32 H 0.089 0.911
33 H 0.188 0.812
34 H 0.396 0.604
35 H 0.060 0.940
36 H 0.070 0.930
37 H 0.060 0.940
38 H 0.057 0.943
39 H 0.075 0.925
40 H 0.059 0.941
41 H 0.251 0.749
42 H 0.011 0.989
43 H 0.109 0.891
44 H 0.071 0.929
45 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.646 -8.015 8.724 18.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.091 4.091
3 C -0.220 4.220
4 N -0.192 5.192
5 C -0.043 4.043
6 C -0.408 4.408
7 C 0.379 3.621
8 O -0.400 6.400
9 N -0.346 5.346
10 C 0.074 3.926
11 C -0.150 4.150
12 C -0.162 4.162
13 C -0.169 4.169
14 C 0.054 3.946
15 H 0.062 0.938
16 N -0.319 5.319
17 C -0.349 4.349
18 H 0.096 0.904
19 C -0.206 4.206
20 N -0.568 5.568
21 Si 0.744 3.256
22 H -0.205 1.205
23 H -0.218 1.218
24 H -0.218 1.218
25 C 0.027 3.973
26 C -0.181 4.181
27 S 0.426 5.574
28 H 0.088 0.912
29 H 0.082 0.918
30 H 0.078 0.922
31 H 0.115 0.885
32 H 0.107 0.893
33 H 0.205 0.795
34 H 0.231 0.769
35 H 0.079 0.921
36 H 0.089 0.911
37 H 0.079 0.921
38 H 0.076 0.924
39 H 0.093 0.907
40 H 0.078 0.922
41 H 0.062 0.938
42 H 0.029 0.971
43 H 0.126 0.874
44 H 0.090 0.910
45 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -14.356 -7.892 8.547 18.478
hybrid contribution 0.490 0.136 -0.460 0.686
sum -13.866 -7.756 8.087 17.828
Atomic orbital electron populations
1.21785 0.93211 1.02764 1.02843 1.20304 0.96912 0.87253 1.04677
1.27504 1.01314 1.01964 0.91244 1.66203 1.15635 1.06143 1.31232
1.22152 0.95333 0.91285 0.95535 1.25923 1.16550 1.00556 0.97793
1.16657 0.77901 0.84736 0.82836 1.90826 1.49346 1.44679 1.55185
1.45834 1.66652 1.16454 1.05691 1.21734 0.95143 0.81050 0.94673
1.22248 0.98853 0.96551 0.97307 1.22347 0.98659 0.99570 0.95641
1.22908 0.98203 0.98528 0.97257 1.21776 0.88989 0.94588 0.89236
0.93787 1.44516 1.01465 1.82732 1.03232 1.19081 0.92585 1.40841
0.82359 0.90429 1.24784 0.96134 1.02013 0.97632 1.69803 1.03486
1.54797 1.28709 0.86023 0.78622 0.77220 0.83763 1.20542 1.21770
1.21836 1.22244 0.97241 0.95828 0.81938 1.23567 0.93224 1.01095
1.00254 1.84036 1.57717 1.04332 1.11311 0.91176 0.91842 0.92230
0.88456 0.89271 0.79534 0.76902 0.92141 0.91079 0.92076 0.92420
0.90666 0.92212 0.93772 0.97070 0.87373 0.90994 0.91661
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.89 9.90 37.16 0.37 -0.52 16
2 C -0.05 -0.36 6.51 -27.88 -0.18 -0.54 16
3 C 0.05 0.58 6.64 -13.29 -0.09 0.49 16
4 N -0.48 -6.01 10.51 -11.50 -0.12 -6.13 16
5 C 0.11 1.51 11.09 -18.85 -0.21 1.30 16
6 C -0.28 -3.94 6.48 -37.09 -0.24 -4.18 16
7 C 0.59 9.75 6.94 -12.85 -0.09 9.66 16
8 O -0.52 -9.82 14.74 5.20 0.08 -9.74 16
9 N -0.70 -11.41 5.23 -46.64 -0.24 -11.65 16
10 C 0.16 2.88 0.71 -129.37 -0.09 2.78 16
11 C -0.11 -1.79 5.24 -25.81 -0.14 -1.93 16
12 C -0.12 -1.83 6.82 -25.19 -0.17 -2.00 16
13 C -0.13 -2.28 6.26 -24.87 -0.16 -2.44 16
14 C 0.16 3.20 3.60 -65.61 -0.24 2.96 16
15 H 0.04 0.85 7.99 -51.93 -0.42 0.44 16
16 N -0.60 -14.43 3.07 -160.27 -0.49 -14.93 16
17 C -0.22 -5.85 10.03 -15.06 -0.15 -6.01 16
18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16
19 C -0.01 -0.28 5.49 -17.44 -0.10 -0.37 16
20 N -0.92 -26.32 10.07 55.49 0.56 -25.76 16
21 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16
22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
25 C 0.15 3.69 5.96 -1.84 -0.01 3.67 16
26 C -0.14 -2.90 5.85 -23.99 -0.14 -3.04 16
27 S 0.17 1.86 22.31 -107.50 -2.40 -0.54 16
28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16
33 H 0.19 2.30 8.06 -52.49 -0.42 1.87 16
34 H 0.40 5.97 7.69 -40.82 -0.31 5.66 16
35 H 0.06 0.97 7.40 -51.93 -0.38 0.58 16
36 H 0.07 1.18 7.41 -51.93 -0.38 0.80 16
37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
39 H 0.07 1.48 8.11 -51.93 -0.42 1.05 16
40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16
42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16
43 H 0.11 2.97 5.82 -51.93 -0.30 2.67 16
44 H 0.07 1.45 7.65 -51.93 -0.40 1.05 16
45 H 0.06 1.35 6.82 -51.93 -0.35 1.00 16
LS Contribution 370.68 15.07 5.59 5.59
Total: -1.00 -30.73 370.68 -10.43 -41.17
By element:
Atomic # 1 Polarization: 12.31 SS G_CDS: -6.75 Total: 5.56 kcal
Atomic # 6 Polarization: 1.48 SS G_CDS: -1.63 Total: -0.15 kcal
Atomic # 7 Polarization: -58.17 SS G_CDS: -0.30 Total: -58.47 kcal
Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal
Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal
Atomic # 16 Polarization: 1.86 SS G_CDS: -2.40 Total: -0.54 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -30.73 -10.43 -41.17 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992551751.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.536 kcal
(2) G-P(sol) polarization free energy of solvation -30.734 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.802 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.370 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds