Wall clock time and date at job start Tue Mar 31 2020 18:14:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50699 * 109.46866 * 2 1
4 4 N 1.29433 * 124.80491 * 89.69483 * 3 2 1
5 5 C 1.30940 * 117.36399 * 179.76608 * 4 3 2
6 6 C 1.35666 * 114.18912 * 0.52073 * 5 4 3
7 7 C 1.46683 * 126.12832 * 179.73153 * 6 5 4
8 8 O 1.21690 * 120.00428 * 0.02562 * 7 6 5
9 9 N 1.34780 * 119.99998 * 180.02562 * 7 6 5
10 10 C 1.46502 * 120.00052 * 179.97438 * 9 7 6
11 11 C 1.53582 * 112.23994 * 300.34991 * 10 9 7
12 12 C 1.54176 * 106.69626 * 237.98132 * 11 10 9
13 13 C 1.54759 * 104.36613 * 335.86889 * 12 11 10
14 14 C 1.54768 * 103.21169 * 37.32863 * 13 12 11
15 15 H 1.09001 * 111.86758 * 84.92114 * 14 13 12
16 16 N 1.46975 * 109.49037 * 209.44892 * 14 13 12
17 17 C 1.36942 * 125.58096 * 294.54554 * 16 14 13
18 18 H 1.08001 * 119.99609 * 359.97438 * 17 16 14
19 19 C 1.38809 * 120.00121 * 179.97438 * 17 16 14
20 20 N 1.31609 * 120.00210 * 359.97438 * 19 17 16
21 21 Si 1.86801 * 119.99623 * 180.02562 * 19 17 16
22 22 H 1.48492 * 109.47557 * 359.97438 * 21 19 17
23 23 H 1.48496 * 109.47151 * 120.00020 * 21 19 17
24 24 H 1.48501 * 109.46722 * 239.99644 * 21 19 17
25 25 C 1.47365 * 108.84456 * 114.50263 * 16 14 13
26 26 C 1.54918 * 112.33402 * 64.35464 * 10 9 7
27 27 S 1.70957 * 124.80325 * 269.99799 * 3 2 1
28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3
29 29 H 1.08993 * 109.46955 * 300.00219 * 1 2 3
30 30 H 1.09000 * 109.47050 * 60.00048 * 1 2 3
31 31 H 1.09000 * 109.47050 * 119.99952 * 2 1 3
32 32 H 1.09001 * 109.46801 * 240.00064 * 2 1 3
33 33 H 1.07999 * 122.90589 * 180.25084 * 5 4 3
34 34 H 0.96994 * 119.99804 * 359.97438 * 9 7 6
35 35 H 1.08999 * 110.02079 * 358.13484 * 11 10 9
36 36 H 1.09006 * 110.01844 * 119.52449 * 11 10 9
37 37 H 1.09000 * 110.80353 * 216.92420 * 12 11 10
38 38 H 1.09003 * 110.09582 * 94.45945 * 12 11 10
39 39 H 1.09001 * 110.66939 * 278.89470 * 13 12 11
40 40 H 1.08996 * 110.81062 * 155.83081 * 13 12 11
41 41 H 0.97003 * 120.00256 * 180.02562 * 20 19 17
42 42 H 1.09005 * 110.36816 * 94.14541 * 25 16 14
43 43 H 1.09000 * 110.37680 * 216.36546 * 25 16 14
44 44 H 1.09000 * 110.96799 * 204.33128 * 26 10 9
45 45 H 1.09005 * 110.96774 * 328.09727 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2732 2.1193 1.0628
5 6 2.7113 3.3415 0.8932
6 6 2.8416 3.7101 -0.4059
7 6 3.3028 5.0147 -0.8926
8 8 3.6112 5.8854 -0.1004
9 7 3.3852 5.2491 -2.2173
10 6 3.8453 6.5523 -2.7034
11 6 2.9507 7.7026 -2.2183
12 6 2.4286 8.4198 -3.4793
13 6 3.4776 8.0927 -4.5691
14 6 3.8722 6.6300 -4.2526
15 1 3.1852 5.9166 -4.7078
16 7 5.2610 6.3950 -4.6725
17 6 5.7181 6.4193 -5.9631
18 1 5.0350 6.6242 -6.7741
19 6 7.0595 6.1805 -6.2289
20 7 7.8920 5.9312 -5.2405
21 14 7.6831 6.2143 -7.9894
22 1 6.5561 6.5155 -8.9082
23 1 8.7263 7.2624 -8.1249
24 1 8.2627 4.8914 -8.3347
25 6 6.0812 6.1299 -3.4773
26 6 5.3170 6.8397 -2.3142
27 16 2.3576 2.3408 -1.4038
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 1.8934 -0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 2.9443 4.0007 1.7163
34 1 3.1397 4.5550 -2.8488
35 1 2.1232 7.3085 -1.6284
36 1 3.5347 8.4031 -1.6212
37 1 2.3703 9.4959 -3.3164
38 1 1.4522 8.0235 -3.7582
39 1 4.3414 8.7518 -4.4818
40 1 3.0383 8.1661 -5.5639
41 1 8.8294 5.7647 -5.4262
42 1 6.1571 5.0571 -3.2995
43 1 7.0736 6.5655 -3.5937
44 1 5.5112 7.9119 -2.2879
45 1 5.5656 6.3761 -1.3594
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000992551751.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:14:21
Heat of formation + Delta-G solvation = 11.571382 kcal
Electronic energy + Delta-G solvation = -27131.862824 eV
Core-core repulsion = 23468.663734 eV
Total energy + Delta-G solvation = -3663.199090 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.75901 -40.85854 -39.38953 -36.06753 -35.02286 -34.82845 -33.33135 -31.79353
-30.65272 -28.44983 -27.80017 -26.80373 -25.76275 -24.10650 -23.29123 -22.10468
-21.52047 -20.50542 -20.22977 -19.31715 -18.87716 -18.07531 -17.07798 -16.85852
-16.51489 -16.40751 -15.86489 -15.55187 -15.47025 -15.11300 -14.93297 -14.80491
-14.53436 -14.43220 -13.95048 -13.55374 -13.29281 -13.20239 -12.92486 -12.86419
-12.69124 -12.67482 -12.57614 -12.37276 -12.07258 -11.98805 -11.92773 -11.73732
-11.62323 -11.51094 -11.26558 -11.13093 -10.77347 -10.74259 -10.62022 -10.12171
-9.95113 -8.87770 -7.73513 -5.18918 -0.85546 0.07945 0.48836 1.33714
1.48632 1.49221 1.59257 1.94486 2.08303 2.51038 3.00149 3.31613
3.36358 3.61223 3.73649 3.85539 3.91243 3.93408 4.15843 4.25964
4.29020 4.34289 4.37560 4.45655 4.55175 4.58890 4.67248 4.78116
4.84039 4.92723 4.96379 4.99816 5.07433 5.07847 5.14091 5.20662
5.30612 5.33364 5.46234 5.50260 5.59765 5.63916 5.81837 6.30527
6.33134 6.51968 7.01416 7.11733 7.79774 8.43778 9.27831
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.013842 B = 0.003369 C = 0.003016
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2022.344857 B = 8308.186090 C = 9280.688223
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.054 4.054
3 C 0.067 3.933
4 N -0.499 5.499
5 C 0.120 3.880
6 C -0.318 4.318
7 C 0.597 3.403
8 O -0.552 6.552
9 N -0.696 5.696
10 C 0.168 3.832
11 C -0.105 4.105
12 C -0.109 4.109
13 C -0.124 4.124
14 C 0.154 3.846
15 H 0.055 0.945
16 N -0.611 5.611
17 C -0.223 4.223
18 H 0.087 0.913
19 C -0.069 4.069
20 N -0.951 5.951
21 Si 0.977 3.023
22 H -0.263 1.263
23 H -0.296 1.296
24 H -0.296 1.296
25 C 0.162 3.838
26 C -0.130 4.130
27 S 0.202 5.798
28 H 0.092 0.908
29 H 0.051 0.949
30 H 0.060 0.940
31 H 0.105 0.895
32 H 0.111 0.889
33 H 0.189 0.811
34 H 0.403 0.597
35 H 0.066 0.934
36 H 0.065 0.935
37 H 0.081 0.919
38 H 0.080 0.920
39 H 0.051 0.949
40 H 0.069 0.931
41 H 0.244 0.756
42 H -0.016 1.016
43 H 0.073 0.927
44 H 0.072 0.928
45 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.283 -8.869 8.094 21.045
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.095 4.095
3 C -0.207 4.207
4 N -0.214 5.214
5 C -0.038 4.038
6 C -0.442 4.442
7 C 0.383 3.617
8 O -0.432 6.432
9 N -0.346 5.346
10 C 0.082 3.918
11 C -0.144 4.144
12 C -0.147 4.147
13 C -0.164 4.164
14 C 0.048 3.952
15 H 0.073 0.927
16 N -0.335 5.335
17 C -0.351 4.351
18 H 0.104 0.896
19 C -0.261 4.261
20 N -0.602 5.602
21 Si 0.806 3.194
22 H -0.187 1.187
23 H -0.224 1.224
24 H -0.224 1.224
25 C 0.037 3.963
26 C -0.169 4.169
27 S 0.459 5.541
28 H 0.110 0.890
29 H 0.070 0.930
30 H 0.079 0.921
31 H 0.123 0.877
32 H 0.129 0.871
33 H 0.205 0.795
34 H 0.238 0.762
35 H 0.085 0.915
36 H 0.084 0.916
37 H 0.100 0.900
38 H 0.099 0.901
39 H 0.070 0.930
40 H 0.087 0.913
41 H 0.054 0.946
42 H 0.002 0.998
43 H 0.091 0.909
44 H 0.090 0.910
45 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -17.050 -8.752 7.897 20.728
hybrid contribution 1.270 0.282 -0.222 1.320
sum -15.780 -8.470 7.674 19.484
Atomic orbital electron populations
1.21787 0.92112 1.04096 1.02325 1.20581 0.97685 0.85050 1.06162
1.28243 0.98882 1.02975 0.90650 1.66290 1.16983 1.06038 1.32045
1.22274 0.94410 0.91662 0.95494 1.25668 1.19050 1.00736 0.98772
1.16903 0.77078 0.85381 0.82344 1.90798 1.50710 1.46007 1.55734
1.45765 1.66665 1.16117 1.06065 1.21586 0.93907 0.82696 0.93648
1.22192 0.98473 0.95608 0.98093 1.22288 0.98416 1.00825 0.93171
1.22775 0.98384 0.96220 0.98993 1.22031 0.86737 0.96171 0.90299
0.92708 1.44693 1.03507 1.82693 1.02571 1.19448 0.92785 1.39320
0.83586 0.89559 1.25587 0.96598 1.02762 1.01185 1.70058 1.03235
1.56399 1.30476 0.85019 0.78089 0.76440 0.79854 1.18750 1.22382
1.22361 1.21892 0.96442 0.94192 0.83808 1.23370 0.94886 1.00461
0.98194 1.83874 1.56951 1.02689 1.10536 0.88967 0.92985 0.92131
0.87664 0.87076 0.79464 0.76157 0.91493 0.91645 0.90024 0.90122
0.92982 0.91259 0.94617 0.99794 0.90924 0.90950 0.92332
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.34 9.90 71.98 0.71 -0.63 16
2 C -0.05 -0.61 6.51 29.85 0.19 -0.42 16
3 C 0.07 1.28 6.64 88.46 0.59 1.87 16
4 N -0.50 -11.98 10.51 -190.30 -2.00 -13.98 16
5 C 0.12 3.14 11.09 84.23 0.93 4.07 16
6 C -0.32 -8.69 6.48 23.88 0.15 -8.53 16
7 C 0.60 19.53 6.94 86.45 0.60 20.13 16
8 O -0.55 -20.94 14.74 -4.32 -0.06 -21.00 16
9 N -0.70 -22.50 5.23 -419.68 -2.19 -24.69 16
10 C 0.17 5.97 0.71 5.19 0.00 5.97 16
11 C -0.10 -3.21 5.24 31.19 0.16 -3.05 16
12 C -0.11 -2.88 6.82 31.59 0.22 -2.66 16
13 C -0.12 -4.17 6.26 31.80 0.20 -3.97 16
14 C 0.15 5.94 3.60 46.24 0.17 6.11 16
15 H 0.06 2.02 7.99 -2.39 -0.02 2.01 16
16 N -0.61 -29.99 3.07 -660.99 -2.03 -32.02 16
17 C -0.22 -11.87 10.03 84.03 0.84 -11.03 16
18 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16
19 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16
20 N -0.95 -56.52 10.07 21.65 0.22 -56.30 16
21 Si 0.98 44.91 29.55 68.60 2.03 46.93 16
22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16
23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16
24 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16
25 C 0.16 8.19 5.96 87.34 0.52 8.71 16
26 C -0.13 -5.43 5.85 32.37 0.19 -5.24 16
27 S 0.20 4.11 22.31 -56.49 -1.26 2.85 16
28 H 0.09 0.48 8.14 -2.39 -0.02 0.47 16
29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16
30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16
31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16
32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16
33 H 0.19 4.67 8.06 -2.91 -0.02 4.64 16
34 H 0.40 11.83 7.69 -92.71 -0.71 11.11 16
35 H 0.07 2.00 7.40 -2.39 -0.02 1.98 16
36 H 0.06 2.09 7.41 -2.38 -0.02 2.07 16
37 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16
38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
39 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16
40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16
41 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16
42 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16
43 H 0.07 4.22 5.82 -2.39 -0.01 4.21 16
44 H 0.07 3.00 7.65 -2.39 -0.02 2.98 16
45 H 0.06 2.52 6.82 -2.38 -0.02 2.50 16
Total: -1.00 -68.18 370.68 0.94 -67.23
By element:
Atomic # 1 Polarization: 22.73 SS G_CDS: 0.29 Total: 23.03 kcal
Atomic # 6 Polarization: 2.00 SS G_CDS: 5.95 Total: 7.95 kcal
Atomic # 7 Polarization: -120.99 SS G_CDS: -6.00 Total: -127.00 kcal
Atomic # 8 Polarization: -20.94 SS G_CDS: -0.06 Total: -21.00 kcal
Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal
Atomic # 16 Polarization: 4.11 SS G_CDS: -1.26 Total: 2.85 kcal
Total: -68.18 0.94 -67.23 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992551751.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.805 kcal
(2) G-P(sol) polarization free energy of solvation -68.178 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.627 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.571 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds