Wall clock time and date at job start Tue Mar 31 2020 18:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47285 * 2 1 4 4 N 1.29432 * 124.80677 * 89.95283 * 3 2 1 5 5 C 1.30940 * 117.36506 * 179.76749 * 4 3 2 6 6 C 1.35664 * 114.18673 * 0.49020 * 5 4 3 7 7 C 1.46687 * 126.12471 * 179.82602 * 6 5 4 8 8 O 1.21687 * 120.00137 * 359.70758 * 7 6 5 9 9 N 1.34778 * 119.99787 * 179.71250 * 7 6 5 10 10 C 1.46507 * 119.99984 * 179.97438 * 9 7 6 11 11 C 1.53581 * 112.23989 * 61.01384 * 10 9 7 12 12 C 1.54225 * 106.71096 * 121.20047 * 11 10 9 13 13 C 1.54755 * 104.15788 * 24.91552 * 12 11 10 14 14 C 1.54777 * 103.21521 * 322.18750 * 13 12 11 15 15 H 1.09003 * 111.86969 * 274.15256 * 14 13 12 16 16 N 1.46978 * 108.68429 * 150.20177 * 14 13 12 17 17 C 1.36929 * 125.57818 * 65.87824 * 16 14 13 18 18 H 1.08006 * 120.00667 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00052 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00288 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47043 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47358 * 119.99698 * 21 19 17 24 24 H 1.48504 * 109.47155 * 239.99749 * 21 19 17 25 25 C 1.47369 * 108.83969 * 245.87416 * 16 14 13 26 26 C 1.54818 * 112.76822 * 297.24952 * 10 9 7 27 27 S 1.70950 * 124.80259 * 270.00161 * 3 2 1 28 28 H 1.09000 * 109.46999 * 60.00571 * 1 2 3 29 29 H 1.09005 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47302 * 299.99955 * 1 2 3 31 31 H 1.09003 * 109.47062 * 239.99979 * 2 1 3 32 32 H 1.09005 * 109.47033 * 120.00166 * 2 1 3 33 33 H 1.07993 * 122.90764 * 180.30647 * 5 4 3 34 34 H 0.96999 * 120.00120 * 359.97438 * 9 7 6 35 35 H 1.09002 * 110.02129 * 1.87097 * 11 10 9 36 36 H 1.08997 * 110.01232 * 240.52390 * 11 10 9 37 37 H 1.09004 * 110.48979 * 143.58263 * 12 11 10 38 38 H 1.08999 * 110.49067 * 266.24178 * 12 11 10 39 39 H 1.08998 * 110.67275 * 80.62448 * 13 12 11 40 40 H 1.09012 * 110.66471 * 203.59160 * 13 12 11 41 41 H 0.96999 * 120.00363 * 180.02562 * 20 19 17 42 42 H 1.09004 * 110.36327 * 143.52380 * 25 16 14 43 43 H 1.08995 * 110.37240 * 265.74094 * 25 16 14 44 44 H 1.09001 * 110.97411 * 155.41380 * 26 10 9 45 45 H 1.08998 * 110.97623 * 31.67638 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2779 2.1176 1.0627 5 6 2.7153 3.3401 0.8932 6 6 2.8407 3.7104 -0.4059 7 6 3.3019 5.0150 -0.8926 8 8 3.6094 5.8860 -0.1004 9 7 3.3850 5.2491 -2.2173 10 6 3.8452 6.5523 -2.7035 11 6 5.2762 6.8711 -2.2461 12 6 6.1131 7.0838 -3.5239 13 6 5.0757 7.5136 -4.5887 14 6 3.8421 6.6411 -4.2533 15 1 3.8949 5.6627 -4.7310 16 7 2.6280 7.3733 -4.6408 17 6 2.2694 7.7002 -5.9212 18 1 2.9028 7.4164 -6.7488 19 6 1.0922 8.3973 -6.1557 20 7 0.3205 8.7437 -5.1474 21 14 0.6025 8.8427 -7.9026 22 1 1.6322 8.3421 -8.8483 23 1 -0.7079 8.2221 -8.2229 24 1 0.4943 10.3187 -8.0253 25 6 1.8599 7.6979 -3.4258 26 6 2.9086 7.7122 -2.2862 27 16 2.3576 2.3407 -1.4037 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9527 3.9977 1.7162 34 1 3.1402 4.5547 -2.8489 35 1 5.6787 6.0372 -1.6709 36 1 5.2812 7.7780 -1.6415 37 1 6.8508 7.8715 -3.3701 38 1 6.6011 6.1551 -3.8195 39 1 4.8369 8.5724 -4.4880 40 1 5.4421 7.2969 -5.5923 41 1 -0.5023 9.2306 -5.3112 42 1 1.3921 8.6776 -3.5232 43 1 1.1047 6.9345 -3.2391 44 1 3.4471 8.6596 -2.2636 45 1 2.4407 7.5087 -1.3230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992551759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:30 Heat of formation + Delta-G solvation = 30.419012 kcal Electronic energy + Delta-G solvation = -27144.392776 eV Core-core repulsion = 23482.010980 eV Total energy + Delta-G solvation = -3662.381796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44498 -39.75659 -38.00566 -34.32749 -34.27263 -33.51755 -31.51619 -30.37249 -29.41369 -26.76189 -26.58830 -25.69586 -23.87291 -23.25001 -22.17228 -20.52281 -20.00093 -19.29317 -18.85745 -18.28622 -17.10852 -16.79465 -15.70177 -15.46503 -15.22822 -14.94839 -14.69467 -14.52573 -14.19931 -13.90937 -13.71101 -13.52983 -13.21722 -12.87165 -12.60669 -12.22622 -12.08546 -11.86653 -11.81029 -11.62511 -11.53053 -11.20056 -11.01036 -10.87251 -10.70674 -10.55980 -10.25024 -10.11820 -10.03291 -9.95827 -9.81567 -9.67586 -9.64259 -9.48962 -9.08909 -8.69023 -8.62615 -6.88262 -5.66917 -3.10432 0.11177 0.99679 1.42170 2.36600 3.20693 3.28380 3.37343 3.42964 3.45435 3.80822 4.44942 4.56606 4.72075 4.81691 4.83899 4.98777 5.12726 5.16581 5.27176 5.29170 5.44412 5.49563 5.56510 5.61493 5.78633 5.81342 5.82080 5.94800 5.96574 6.04969 6.11198 6.18715 6.33011 6.39148 6.50736 6.56919 6.74193 6.75938 6.93982 7.06583 7.41463 7.51729 7.62197 7.65693 7.85266 8.29542 8.34297 9.18884 9.79844 10.43757 11.35649 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.003481 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.481433 B = 8040.701866 C = 9275.347644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C 0.055 3.945 4 N -0.478 5.478 5 C 0.114 3.886 6 C -0.284 4.284 7 C 0.594 3.406 8 O -0.522 6.522 9 N -0.697 5.697 10 C 0.161 3.839 11 C -0.111 4.111 12 C -0.124 4.124 13 C -0.129 4.129 14 C 0.162 3.838 15 H 0.046 0.954 16 N -0.596 5.596 17 C -0.221 4.221 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.919 5.919 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.152 3.848 26 C -0.141 4.141 27 S 0.169 5.831 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.188 0.812 34 H 0.396 0.604 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.251 0.749 42 H 0.109 0.891 43 H 0.009 0.991 44 H 0.070 0.930 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.565 -15.509 8.503 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.220 4.220 4 N -0.192 5.192 5 C -0.043 4.043 6 C -0.408 4.408 7 C 0.379 3.621 8 O -0.400 6.400 9 N -0.346 5.346 10 C 0.075 3.925 11 C -0.150 4.150 12 C -0.163 4.163 13 C -0.169 4.169 14 C 0.053 3.947 15 H 0.064 0.936 16 N -0.320 5.320 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.027 3.973 26 C -0.181 4.181 27 S 0.426 5.574 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.205 0.795 34 H 0.231 0.769 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.127 0.873 43 H 0.027 0.973 44 H 0.089 0.911 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.424 -15.223 8.331 18.182 hybrid contribution -0.279 0.418 -0.458 0.680 sum 5.146 -14.805 7.873 17.540 Atomic orbital electron populations 1.21796 0.93121 1.02787 1.03042 1.20299 0.97021 0.87198 1.04530 1.27509 1.01323 1.01961 0.91235 1.66202 1.15535 1.06242 1.31229 1.22153 0.95359 0.91245 0.95538 1.25923 1.16522 1.00579 0.97796 1.16658 0.77910 0.84721 0.82833 1.90825 1.49436 1.44548 1.55175 1.45818 1.66960 1.16145 1.05695 1.21698 0.93892 0.82287 0.94591 1.22282 0.93620 1.01789 0.97319 1.22367 0.97775 1.00490 0.95636 1.22952 0.95226 1.01371 0.97378 1.21817 0.88871 0.94633 0.89358 0.93612 1.44536 1.20500 1.63722 1.03206 1.19076 1.03809 1.29447 0.82546 0.90428 1.24782 0.97222 1.00971 0.97550 1.69810 1.14384 1.44458 1.28132 0.86030 0.78080 0.77902 0.83652 1.20542 1.21834 1.21768 1.21982 0.90603 1.02757 0.81946 1.23317 0.98609 0.95908 1.00226 1.84021 1.57938 1.04148 1.11338 0.92093 0.91169 0.91785 0.89352 0.88505 0.79529 0.76906 0.92298 0.90963 0.92127 0.92339 0.90635 0.92273 0.93783 0.87343 0.97326 0.91110 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.05 -0.35 6.51 -27.88 -0.18 -0.53 16 3 C 0.05 0.57 6.64 -13.29 -0.09 0.49 16 4 N -0.48 -5.99 10.51 -11.50 -0.12 -6.11 16 5 C 0.11 1.51 11.09 -18.85 -0.21 1.30 16 6 C -0.28 -3.93 6.48 -37.09 -0.24 -4.17 16 7 C 0.59 9.74 6.97 -12.85 -0.09 9.65 16 8 O -0.52 -9.81 14.74 5.20 0.08 -9.74 16 9 N -0.70 -11.37 5.24 -46.63 -0.24 -11.61 16 10 C 0.16 2.90 0.74 -129.37 -0.10 2.80 16 11 C -0.11 -1.80 5.26 -25.79 -0.14 -1.93 16 12 C -0.12 -1.84 6.84 -25.17 -0.17 -2.01 16 13 C -0.13 -2.29 6.21 -24.87 -0.15 -2.45 16 14 C 0.16 3.18 3.65 -65.55 -0.24 2.94 16 15 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 16 N -0.60 -14.46 3.03 -161.07 -0.49 -14.95 16 17 C -0.22 -5.86 10.01 -15.06 -0.15 -6.02 16 18 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -26.35 10.07 55.49 0.56 -25.79 16 21 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.15 3.69 5.91 -2.58 -0.02 3.67 16 26 C -0.14 -2.89 5.75 -24.79 -0.14 -3.03 16 27 S 0.17 1.84 22.31 -107.50 -2.40 -0.56 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.40 5.91 7.70 -40.82 -0.31 5.60 16 35 H 0.06 0.94 7.49 -51.93 -0.39 0.55 16 36 H 0.07 1.20 7.37 -51.93 -0.38 0.82 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 40 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.11 2.98 5.83 -51.93 -0.30 2.68 16 43 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 1.43 7.62 -51.93 -0.40 1.04 16 45 H 0.07 1.40 6.72 -51.93 -0.35 1.05 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -30.80 370.51 -10.44 -41.24 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.74 Total: 5.61 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.64 Total: -0.26 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.29 Total: -58.47 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.40 Total: -0.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.80 -10.44 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992551759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.664 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds