Wall clock time and date at job start Tue Mar 31 2020 18:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47285 * 2 1 4 4 N 1.29432 * 124.80677 * 89.95283 * 3 2 1 5 5 C 1.30940 * 117.36506 * 179.76749 * 4 3 2 6 6 C 1.35664 * 114.18673 * 0.49020 * 5 4 3 7 7 C 1.46687 * 126.12471 * 179.82602 * 6 5 4 8 8 O 1.21687 * 120.00137 * 359.70758 * 7 6 5 9 9 N 1.34778 * 119.99787 * 179.71250 * 7 6 5 10 10 C 1.46507 * 119.99984 * 179.97438 * 9 7 6 11 11 C 1.53581 * 112.23989 * 61.01384 * 10 9 7 12 12 C 1.54225 * 106.71096 * 121.20047 * 11 10 9 13 13 C 1.54755 * 104.15788 * 24.91552 * 12 11 10 14 14 C 1.54777 * 103.21521 * 322.18750 * 13 12 11 15 15 H 1.09003 * 111.86969 * 274.15256 * 14 13 12 16 16 N 1.46978 * 108.68429 * 150.20177 * 14 13 12 17 17 C 1.36929 * 125.57818 * 65.87824 * 16 14 13 18 18 H 1.08006 * 120.00667 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00052 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00288 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47043 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47358 * 119.99698 * 21 19 17 24 24 H 1.48504 * 109.47155 * 239.99749 * 21 19 17 25 25 C 1.47369 * 108.83969 * 245.87416 * 16 14 13 26 26 C 1.54818 * 112.76822 * 297.24952 * 10 9 7 27 27 S 1.70950 * 124.80259 * 270.00161 * 3 2 1 28 28 H 1.09000 * 109.46999 * 60.00571 * 1 2 3 29 29 H 1.09005 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47302 * 299.99955 * 1 2 3 31 31 H 1.09003 * 109.47062 * 239.99979 * 2 1 3 32 32 H 1.09005 * 109.47033 * 120.00166 * 2 1 3 33 33 H 1.07993 * 122.90764 * 180.30647 * 5 4 3 34 34 H 0.96999 * 120.00120 * 359.97438 * 9 7 6 35 35 H 1.09002 * 110.02129 * 1.87097 * 11 10 9 36 36 H 1.08997 * 110.01232 * 240.52390 * 11 10 9 37 37 H 1.09004 * 110.48979 * 143.58263 * 12 11 10 38 38 H 1.08999 * 110.49067 * 266.24178 * 12 11 10 39 39 H 1.08998 * 110.67275 * 80.62448 * 13 12 11 40 40 H 1.09012 * 110.66471 * 203.59160 * 13 12 11 41 41 H 0.96999 * 120.00363 * 180.02562 * 20 19 17 42 42 H 1.09004 * 110.36327 * 143.52380 * 25 16 14 43 43 H 1.08995 * 110.37240 * 265.74094 * 25 16 14 44 44 H 1.09001 * 110.97411 * 155.41380 * 26 10 9 45 45 H 1.08998 * 110.97623 * 31.67638 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2779 2.1176 1.0627 5 6 2.7153 3.3401 0.8932 6 6 2.8407 3.7104 -0.4059 7 6 3.3019 5.0150 -0.8926 8 8 3.6094 5.8860 -0.1004 9 7 3.3850 5.2491 -2.2173 10 6 3.8452 6.5523 -2.7035 11 6 5.2762 6.8711 -2.2461 12 6 6.1131 7.0838 -3.5239 13 6 5.0757 7.5136 -4.5887 14 6 3.8421 6.6411 -4.2533 15 1 3.8949 5.6627 -4.7310 16 7 2.6280 7.3733 -4.6408 17 6 2.2694 7.7002 -5.9212 18 1 2.9028 7.4164 -6.7488 19 6 1.0922 8.3973 -6.1557 20 7 0.3205 8.7437 -5.1474 21 14 0.6025 8.8427 -7.9026 22 1 1.6322 8.3421 -8.8483 23 1 -0.7079 8.2221 -8.2229 24 1 0.4943 10.3187 -8.0253 25 6 1.8599 7.6979 -3.4258 26 6 2.9086 7.7122 -2.2862 27 16 2.3576 2.3407 -1.4037 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9527 3.9977 1.7162 34 1 3.1402 4.5547 -2.8489 35 1 5.6787 6.0372 -1.6709 36 1 5.2812 7.7780 -1.6415 37 1 6.8508 7.8715 -3.3701 38 1 6.6011 6.1551 -3.8195 39 1 4.8369 8.5724 -4.4880 40 1 5.4421 7.2969 -5.5923 41 1 -0.5023 9.2306 -5.3112 42 1 1.3921 8.6776 -3.5232 43 1 1.1047 6.9345 -3.2391 44 1 3.4471 8.6596 -2.2636 45 1 2.4407 7.5087 -1.3230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992551759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:29 Heat of formation + Delta-G solvation = 11.522733 kcal Electronic energy + Delta-G solvation = -27145.212180 eV Core-core repulsion = 23482.010980 eV Total energy + Delta-G solvation = -3663.201200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76842 -40.86469 -39.40735 -36.07496 -35.02289 -34.82542 -33.36293 -31.83029 -30.68146 -28.43766 -27.82247 -26.81217 -25.74622 -24.10899 -23.29111 -22.09531 -21.49343 -20.51975 -20.24192 -19.32222 -18.88979 -18.07661 -17.06816 -16.86130 -16.54575 -16.37742 -15.84703 -15.57219 -15.50248 -15.12615 -14.86550 -14.85258 -14.55439 -14.46001 -13.94322 -13.54864 -13.30360 -13.18257 -12.95264 -12.86439 -12.69854 -12.67213 -12.58252 -12.33395 -12.07812 -11.99043 -11.91243 -11.73553 -11.64899 -11.52492 -11.27319 -11.13313 -10.77296 -10.73565 -10.61927 -10.12314 -9.95223 -8.87430 -7.73731 -5.18924 -0.85512 0.08047 0.48851 1.33738 1.48498 1.49152 1.59151 1.93902 2.08354 2.51011 3.00390 3.31388 3.36244 3.61425 3.73653 3.85650 3.91612 3.93267 4.15867 4.25600 4.28273 4.33691 4.39253 4.45273 4.56657 4.60839 4.66754 4.78611 4.83977 4.92617 4.95928 4.98387 5.07046 5.07642 5.14150 5.20955 5.31099 5.32448 5.45761 5.50900 5.59924 5.64153 5.81900 6.30327 6.33093 6.52112 7.01407 7.11614 7.79757 8.43776 9.27893 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.003481 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.481433 B = 8040.701866 C = 9275.347644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.066 3.934 4 N -0.499 5.499 5 C 0.120 3.880 6 C -0.318 4.318 7 C 0.597 3.403 8 O -0.552 6.552 9 N -0.696 5.696 10 C 0.170 3.830 11 C -0.105 4.105 12 C -0.109 4.109 13 C -0.124 4.124 14 C 0.154 3.846 15 H 0.058 0.942 16 N -0.611 5.611 17 C -0.223 4.223 18 H 0.087 0.913 19 C -0.069 4.069 20 N -0.952 5.952 21 Si 0.976 3.024 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.296 1.296 25 C 0.162 3.838 26 C -0.129 4.129 27 S 0.203 5.797 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.188 0.812 34 H 0.403 0.597 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.244 0.756 42 H 0.073 0.927 43 H -0.020 1.020 44 H 0.070 0.930 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.155 -17.967 7.799 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.208 4.208 4 N -0.214 5.214 5 C -0.039 4.039 6 C -0.442 4.442 7 C 0.383 3.617 8 O -0.432 6.432 9 N -0.346 5.346 10 C 0.083 3.917 11 C -0.144 4.144 12 C -0.147 4.147 13 C -0.164 4.164 14 C 0.047 3.953 15 H 0.075 0.925 16 N -0.335 5.335 17 C -0.352 4.352 18 H 0.105 0.895 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.224 1.224 25 C 0.037 3.963 26 C -0.169 4.169 27 S 0.461 5.539 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.205 0.795 34 H 0.239 0.761 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.091 0.909 43 H -0.002 1.002 44 H 0.089 0.911 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.053 -17.722 7.606 20.535 hybrid contribution -0.825 1.066 -0.200 1.363 sum 6.228 -16.656 7.406 19.263 Atomic orbital electron populations 1.21805 0.92649 1.04079 1.02098 1.20571 0.97224 0.85069 1.06389 1.28249 0.98914 1.02982 0.90649 1.66290 1.16864 1.06143 1.32063 1.22271 0.94461 0.91626 0.95498 1.25668 1.19003 1.00779 0.98788 1.16909 0.77092 0.85365 0.82348 1.90797 1.50816 1.45893 1.55740 1.45746 1.67144 1.15619 1.06071 1.21546 0.94504 0.82131 0.93512 1.22225 0.92299 1.01760 0.98152 1.22310 0.96974 1.02256 0.93183 1.22809 0.95120 0.99407 0.99076 1.22078 0.87822 0.94929 0.90475 0.92467 1.44717 1.21928 1.64329 1.02519 1.19450 1.03604 1.28363 0.83763 0.89524 1.25584 0.97686 1.01759 1.01042 1.70066 1.14574 1.45606 1.29947 0.85025 0.77634 0.76948 0.79828 1.18725 1.22369 1.22365 1.21626 0.91128 0.99739 0.83805 1.23119 0.98088 0.97406 0.98250 1.83851 1.57167 1.02406 1.10524 0.92561 0.88814 0.93215 0.86732 0.87381 0.79490 0.76099 0.91558 0.91568 0.90118 0.89973 0.93049 0.91309 0.94632 0.90902 1.00171 0.91115 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.90 71.98 0.71 -0.88 16 2 C -0.05 -0.58 6.51 29.85 0.19 -0.38 16 3 C 0.07 1.26 6.64 88.46 0.59 1.85 16 4 N -0.50 -11.94 10.51 -190.31 -2.00 -13.94 16 5 C 0.12 3.13 11.09 84.23 0.93 4.06 16 6 C -0.32 -8.66 6.48 23.88 0.15 -8.51 16 7 C 0.60 19.50 6.97 86.45 0.60 20.11 16 8 O -0.55 -20.97 14.74 -4.31 -0.06 -21.03 16 9 N -0.70 -22.38 5.24 -419.67 -2.20 -24.58 16 10 C 0.17 6.02 0.74 5.19 0.00 6.02 16 11 C -0.11 -3.23 5.26 31.20 0.16 -3.06 16 12 C -0.11 -2.88 6.84 31.61 0.22 -2.67 16 13 C -0.12 -4.20 6.21 31.80 0.20 -4.00 16 14 C 0.15 5.91 3.65 46.27 0.17 6.08 16 15 H 0.06 2.10 8.01 -2.39 -0.02 2.09 16 16 N -0.61 -30.07 3.03 -663.50 -2.01 -32.08 16 17 C -0.22 -11.91 10.01 84.03 0.84 -11.07 16 18 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 20 N -0.95 -56.67 10.07 21.65 0.22 -56.45 16 21 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 25 C 0.16 8.24 5.91 86.85 0.51 8.75 16 26 C -0.13 -5.44 5.75 31.85 0.18 -5.25 16 27 S 0.20 4.09 22.31 -56.49 -1.26 2.83 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.40 11.69 7.70 -92.71 -0.71 10.98 16 35 H 0.07 1.96 7.49 -2.39 -0.02 1.94 16 36 H 0.07 2.12 7.37 -2.39 -0.02 2.10 16 37 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 40 H 0.07 2.18 8.14 -2.38 -0.02 2.17 16 41 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.07 4.25 5.83 -2.39 -0.01 4.24 16 43 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 44 H 0.07 2.94 7.62 -2.39 -0.02 2.93 16 45 H 0.06 2.61 6.72 -2.39 -0.02 2.60 16 Total: -1.00 -68.57 370.51 0.95 -67.62 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.29 Total: 22.97 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.94 Total: 7.71 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.99 Total: -127.06 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.06 Total: -21.03 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.26 Total: 2.83 kcal Total: -68.57 0.95 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992551759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.143 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds