Wall clock time and date at job start Tue Mar 31 2020 18:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 C 1.50689 * 109.47660 * 120.00522 * 2 1 3 5 5 N 1.30953 * 122.90316 * 293.01791 * 4 2 1 6 6 C 1.29433 * 117.36235 * 180.28638 * 5 4 2 7 7 S 1.70957 * 110.38997 * 359.73006 * 6 5 4 8 8 C 1.35663 * 122.91034 * 112.80088 * 4 2 1 9 9 C 1.46690 * 126.12373 * 0.02642 * 8 4 2 10 10 O 1.21683 * 120.00020 * 355.38155 * 9 8 4 11 11 N 1.34776 * 119.99822 * 175.39148 * 9 8 4 12 12 C 1.46497 * 120.00107 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47379 * 179.97438 * 12 11 9 14 14 C 1.29454 * 117.69147 * 94.99651 * 13 12 11 15 15 C 1.50329 * 123.65186 * 180.85884 * 14 13 12 16 16 N 1.47006 * 109.16408 * 349.02600 * 15 14 13 17 17 C 1.36939 * 121.37542 * 222.96604 * 16 15 14 18 18 H 1.08005 * 119.99421 * 147.66328 * 17 16 15 19 19 C 1.38810 * 119.99963 * 327.66334 * 17 16 15 20 20 N 1.31611 * 119.99997 * 358.61118 * 19 17 16 21 21 Si 1.86795 * 119.99657 * 178.60407 * 19 17 16 22 22 H 1.48505 * 109.47256 * 60.00473 * 21 19 17 23 23 H 1.48505 * 109.47281 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47495 * 300.00349 * 21 19 17 25 25 C 1.47339 * 117.24837 * 42.94622 * 16 15 14 26 26 C 1.49969 * 117.69627 * 274.74299 * 13 12 11 27 27 H 1.09002 * 109.46749 * 299.99421 * 1 2 3 28 28 H 1.08997 * 109.47902 * 59.99364 * 1 2 3 29 29 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46749 * 240.00579 * 2 1 3 31 31 H 1.09000 * 109.46991 * 300.00616 * 3 2 1 32 32 H 1.09002 * 109.46922 * 60.00685 * 3 2 1 33 33 H 1.09003 * 109.46701 * 180.02562 * 3 2 1 34 34 H 1.07999 * 124.80309 * 179.75216 * 6 5 4 35 35 H 0.97004 * 119.99654 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.47177 * 299.99885 * 12 11 9 37 37 H 1.09003 * 109.47228 * 59.99638 * 12 11 9 38 38 H 1.07997 * 118.17492 * 0.88887 * 14 13 12 39 39 H 1.08995 * 109.52341 * 108.92855 * 15 14 13 40 40 H 1.08993 * 109.52377 * 229.12225 * 15 14 13 41 41 H 0.97005 * 120.00067 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.78206 * 57.81254 * 25 16 15 43 43 H 1.09008 * 109.77613 * 178.61495 * 25 16 15 44 44 H 1.09001 * 109.31158 * 281.28664 * 26 13 12 45 45 H 1.08997 * 109.31291 * 40.71545 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.8643 -0.2412 2.4412 6 6 2.3449 -0.9372 3.4210 7 16 3.0991 -2.3537 2.8316 8 6 2.6943 -1.8936 1.1796 9 6 3.0202 -2.6508 -0.0337 10 8 2.6175 -2.2681 -1.1164 11 7 3.7655 -3.7706 0.0507 12 6 4.0905 -4.5272 -1.1609 13 6 4.9277 -5.7257 -0.7953 14 6 4.3174 -6.8525 -0.6117 15 6 5.0172 -8.1258 -0.2257 16 7 6.4692 -7.9371 -0.3564 17 6 7.2656 -8.8998 -0.9170 18 1 8.1462 -8.6152 -1.4737 19 6 6.9410 -10.2414 -0.7696 20 7 5.8831 -10.5893 -0.0681 21 14 8.0056 -11.5528 -1.5670 22 1 9.3891 -11.4580 -1.0356 23 1 7.4488 -12.8954 -1.2622 24 1 8.0252 -11.3479 -3.0376 25 6 7.0322 -6.6693 0.1401 26 6 6.4098 -5.5304 -0.6755 27 1 -0.3633 0.5138 0.8901 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 -0.0005 34 1 2.2785 -0.6622 4.4632 35 1 4.0866 -4.0755 0.9137 36 1 3.1696 -4.8595 -1.6399 37 1 4.6483 -3.8909 -1.8481 38 1 3.2458 -6.8794 -0.7437 39 1 4.7740 -8.3764 0.8068 40 1 4.6941 -8.9327 -0.8832 41 1 5.6565 -11.5268 0.0352 42 1 6.7906 -6.5468 1.1959 43 1 8.1140 -6.6686 0.0061 44 1 6.8526 -5.5114 -1.6714 45 1 6.6092 -4.5817 -0.1772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001243984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:16 Heat of formation + Delta-G solvation = 39.194449 kcal Electronic energy + Delta-G solvation = -26070.066619 eV Core-core repulsion = 22408.065355 eV Total energy + Delta-G solvation = -3662.001264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74918 -39.32706 -37.75019 -35.27091 -34.78873 -33.01128 -31.19866 -30.39515 -29.72907 -27.27436 -27.20622 -25.92884 -24.26507 -22.82503 -22.49854 -21.60449 -21.07911 -19.74168 -18.14349 -17.72185 -17.21478 -16.14433 -15.79804 -15.58222 -15.26974 -15.03087 -14.60879 -14.53339 -14.39603 -14.00821 -13.78817 -13.61936 -13.42847 -13.05566 -12.98115 -12.60479 -12.29843 -12.27028 -12.09175 -11.63801 -11.45872 -11.33190 -11.26198 -11.08045 -10.85920 -10.83955 -10.42882 -10.37211 -10.22914 -9.92909 -9.84124 -9.78483 -9.64516 -9.22893 -9.03718 -8.71919 -8.12087 -6.67054 -5.85553 -3.33423 -0.02312 0.90925 1.28616 2.20699 2.48772 3.00599 3.35213 3.38233 3.40489 3.41265 3.84693 4.43952 4.55421 4.67588 4.74115 5.03275 5.06194 5.13096 5.27140 5.29630 5.38618 5.52050 5.52635 5.65565 5.70986 5.75506 5.80086 5.87215 5.94547 6.02475 6.09152 6.11623 6.21904 6.29285 6.40781 6.48258 6.70387 6.83582 7.12488 7.22490 7.24872 7.30616 7.42440 7.70606 7.78128 8.02148 8.39399 9.16829 9.75754 10.37956 11.24674 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.002307 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.379079 B =12133.508203 C =12561.703746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C -0.138 4.138 4 C 0.152 3.848 5 N -0.469 5.469 6 C 0.032 3.968 7 S 0.166 5.834 8 C -0.292 4.292 9 C 0.594 3.406 10 O -0.525 6.525 11 N -0.712 5.712 12 C 0.158 3.842 13 C -0.171 4.171 14 C -0.121 4.121 15 C 0.195 3.805 16 N -0.595 5.595 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.007 3.993 20 N -0.910 5.910 21 Si 0.907 3.093 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.144 3.856 26 C -0.090 4.090 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.205 0.795 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.094 0.906 41 H 0.256 0.744 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 19.976 6.117 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.069 4.069 3 C -0.195 4.195 4 C 0.014 3.986 5 N -0.183 5.183 6 C -0.263 4.263 7 S 0.421 5.579 8 C -0.416 4.416 9 C 0.379 3.621 10 O -0.405 6.405 11 N -0.363 5.363 12 C 0.036 3.964 13 C -0.172 4.172 14 C -0.142 4.142 15 C 0.070 3.930 16 N -0.318 5.318 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.017 3.983 26 C -0.130 4.130 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.222 0.778 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.112 0.888 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.223 19.664 6.038 22.153 hybrid contribution 0.289 -0.483 -0.394 0.687 sum -7.934 19.181 5.644 21.510 Atomic orbital electron populations 1.21711 0.93643 1.01901 1.02013 1.20385 0.96483 0.96109 0.93957 1.21752 1.00801 0.94828 1.02151 1.20702 0.93914 0.90676 0.93306 1.66056 1.20828 1.32749 0.98621 1.28740 0.99130 0.94820 1.03627 1.84138 1.51911 1.23881 0.97951 1.25583 1.14825 1.03570 0.97652 1.16708 0.78499 0.80269 0.86614 1.90710 1.53853 1.68058 1.27853 1.46140 1.52934 1.25424 1.11757 1.20539 0.98504 0.91663 0.85695 1.20480 0.95657 0.93656 1.07365 1.23387 0.99054 0.97143 0.94602 1.19803 0.82817 0.91040 0.99368 1.44031 1.02189 1.15526 1.70081 1.19084 1.06988 0.85495 1.26485 0.91721 1.25252 0.98008 0.97628 0.98305 1.69907 1.26651 1.16334 1.42566 0.86308 0.80151 0.80887 0.79012 1.20823 1.21558 1.20925 1.21009 0.96633 0.86267 0.94349 1.20795 0.92078 0.98948 1.01133 0.92404 0.91902 0.92823 0.85727 0.92056 0.92054 0.93027 0.77798 0.76581 0.91244 0.91177 0.88816 0.94017 0.88827 0.93415 0.95886 0.92416 0.91695 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.18 37.16 0.34 -1.02 16 2 C -0.05 -0.55 3.10 -91.78 -0.28 -0.84 16 3 C -0.14 -1.34 9.08 37.16 0.34 -1.00 16 4 C 0.15 1.81 5.40 -83.89 -0.45 1.35 16 5 N -0.47 -5.04 10.26 -11.53 -0.12 -5.16 16 6 C 0.03 0.26 12.22 51.75 0.63 0.89 16 7 S 0.17 1.44 22.36 -107.50 -2.40 -0.97 16 8 C -0.29 -3.50 6.48 -37.09 -0.24 -3.74 16 9 C 0.59 8.24 7.77 -12.85 -0.10 8.14 16 10 O -0.53 -8.50 14.03 5.20 0.07 -8.43 16 11 N -0.71 -9.37 5.54 -62.80 -0.35 -9.72 16 12 C 0.16 2.29 5.66 -5.20 -0.03 2.26 16 13 C -0.17 -2.83 5.22 -100.99 -0.53 -3.36 16 14 C -0.12 -2.22 9.47 -35.78 -0.34 -2.56 16 15 C 0.19 4.47 5.14 -5.10 -0.03 4.44 16 16 N -0.59 -14.47 2.99 -173.56 -0.52 -14.99 16 17 C -0.25 -6.72 9.66 -15.06 -0.15 -6.87 16 18 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 19 C 0.01 0.18 5.26 -17.43 -0.09 0.09 16 20 N -0.91 -25.57 10.92 55.49 0.61 -24.97 16 21 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.14 2.88 6.59 -3.43 -0.02 2.86 16 26 C -0.09 -1.52 5.95 -28.09 -0.17 -1.69 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.13 1.65 5.04 -51.93 -0.26 1.39 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.40 4.78 7.66 -40.82 -0.31 4.47 16 36 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 37 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.09 1.55 7.73 -52.49 -0.41 1.14 16 39 H 0.04 1.02 8.13 -51.93 -0.42 0.60 16 40 H 0.09 2.41 6.60 -51.93 -0.34 2.07 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.13 7.96 -51.92 -0.41 0.72 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -30.38 379.57 -9.88 -40.27 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.75 Total: 3.03 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.12 Total: -1.05 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.38 Total: -54.84 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.07 Total: -8.43 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.40 Total: -0.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.38 -9.88 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001243984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.461 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds