Wall clock time and date at job start Tue Mar 31 2020 18:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 C 1.50689 * 109.47660 * 120.00522 * 2 1 3 5 5 N 1.30953 * 122.90316 * 293.01791 * 4 2 1 6 6 C 1.29433 * 117.36235 * 180.28638 * 5 4 2 7 7 S 1.70957 * 110.38997 * 359.73006 * 6 5 4 8 8 C 1.35663 * 122.91034 * 112.80088 * 4 2 1 9 9 C 1.46690 * 126.12373 * 0.02642 * 8 4 2 10 10 O 1.21683 * 120.00020 * 355.38155 * 9 8 4 11 11 N 1.34776 * 119.99822 * 175.39148 * 9 8 4 12 12 C 1.46497 * 120.00107 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47379 * 179.97438 * 12 11 9 14 14 C 1.29454 * 117.69147 * 94.99651 * 13 12 11 15 15 C 1.50329 * 123.65186 * 180.85884 * 14 13 12 16 16 N 1.47006 * 109.16408 * 349.02600 * 15 14 13 17 17 C 1.36939 * 121.37542 * 222.96604 * 16 15 14 18 18 H 1.08005 * 119.99421 * 147.66328 * 17 16 15 19 19 C 1.38810 * 119.99963 * 327.66334 * 17 16 15 20 20 N 1.31611 * 119.99997 * 358.61118 * 19 17 16 21 21 Si 1.86795 * 119.99657 * 178.60407 * 19 17 16 22 22 H 1.48505 * 109.47256 * 60.00473 * 21 19 17 23 23 H 1.48505 * 109.47281 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47495 * 300.00349 * 21 19 17 25 25 C 1.47339 * 117.24837 * 42.94622 * 16 15 14 26 26 C 1.49969 * 117.69627 * 274.74299 * 13 12 11 27 27 H 1.09002 * 109.46749 * 299.99421 * 1 2 3 28 28 H 1.08997 * 109.47902 * 59.99364 * 1 2 3 29 29 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46749 * 240.00579 * 2 1 3 31 31 H 1.09000 * 109.46991 * 300.00616 * 3 2 1 32 32 H 1.09002 * 109.46922 * 60.00685 * 3 2 1 33 33 H 1.09003 * 109.46701 * 180.02562 * 3 2 1 34 34 H 1.07999 * 124.80309 * 179.75216 * 6 5 4 35 35 H 0.97004 * 119.99654 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.47177 * 299.99885 * 12 11 9 37 37 H 1.09003 * 109.47228 * 59.99638 * 12 11 9 38 38 H 1.07997 * 118.17492 * 0.88887 * 14 13 12 39 39 H 1.08995 * 109.52341 * 108.92855 * 15 14 13 40 40 H 1.08993 * 109.52377 * 229.12225 * 15 14 13 41 41 H 0.97005 * 120.00067 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.78206 * 57.81254 * 25 16 15 43 43 H 1.09008 * 109.77613 * 178.61495 * 25 16 15 44 44 H 1.09001 * 109.31158 * 281.28664 * 26 13 12 45 45 H 1.08997 * 109.31291 * 40.71545 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.8643 -0.2412 2.4412 6 6 2.3449 -0.9372 3.4210 7 16 3.0991 -2.3537 2.8316 8 6 2.6943 -1.8936 1.1796 9 6 3.0202 -2.6508 -0.0337 10 8 2.6175 -2.2681 -1.1164 11 7 3.7655 -3.7706 0.0507 12 6 4.0905 -4.5272 -1.1609 13 6 4.9277 -5.7257 -0.7953 14 6 4.3174 -6.8525 -0.6117 15 6 5.0172 -8.1258 -0.2257 16 7 6.4692 -7.9371 -0.3564 17 6 7.2656 -8.8998 -0.9170 18 1 8.1462 -8.6152 -1.4737 19 6 6.9410 -10.2414 -0.7696 20 7 5.8831 -10.5893 -0.0681 21 14 8.0056 -11.5528 -1.5670 22 1 9.3891 -11.4580 -1.0356 23 1 7.4488 -12.8954 -1.2622 24 1 8.0252 -11.3479 -3.0376 25 6 7.0322 -6.6693 0.1401 26 6 6.4098 -5.5304 -0.6755 27 1 -0.3633 0.5138 0.8901 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 -0.0005 34 1 2.2785 -0.6622 4.4632 35 1 4.0866 -4.0755 0.9137 36 1 3.1696 -4.8595 -1.6399 37 1 4.6483 -3.8909 -1.8481 38 1 3.2458 -6.8794 -0.7437 39 1 4.7740 -8.3764 0.8068 40 1 4.6941 -8.9327 -0.8832 41 1 5.6565 -11.5268 0.0352 42 1 6.7906 -6.5468 1.1959 43 1 8.1140 -6.6686 0.0061 44 1 6.8526 -5.5114 -1.6714 45 1 6.6092 -4.5817 -0.1772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001243984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:15 Heat of formation + Delta-G solvation = 20.833719 kcal Electronic energy + Delta-G solvation = -26070.862800 eV Core-core repulsion = 22408.065355 eV Total energy + Delta-G solvation = -3662.797445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.62210 -40.37205 -39.25076 -36.53113 -35.75529 -34.60546 -32.77224 -31.56578 -31.24240 -28.64263 -28.04625 -26.93914 -25.77842 -24.39222 -23.47175 -22.86245 -22.36941 -20.71644 -19.48612 -18.93273 -18.24150 -17.35915 -17.08009 -17.00716 -16.60388 -16.14908 -15.73229 -15.64667 -15.36143 -15.20862 -15.18325 -15.07417 -14.62503 -14.43835 -13.93779 -13.81623 -13.64495 -13.35678 -13.28492 -13.01196 -12.96544 -12.69232 -12.64508 -12.28535 -12.20055 -12.13121 -12.04308 -11.87558 -11.76272 -11.26154 -11.09164 -10.71227 -10.66273 -10.64039 -10.21311 -9.87331 -9.67712 -8.62123 -7.89092 -5.39592 -0.79378 0.18065 0.56206 1.13054 1.37773 1.47872 1.49241 1.55769 2.04297 2.25176 2.50108 3.15338 3.29953 3.61275 3.67636 3.82548 3.92947 3.96181 4.03028 4.23534 4.32039 4.42338 4.52592 4.53230 4.63392 4.72354 4.78867 4.83891 4.84455 4.91881 4.94027 5.01050 5.09870 5.14863 5.22518 5.24869 5.31095 5.39951 5.50731 5.51904 5.62541 5.75030 6.15641 6.30768 6.39085 6.58035 6.98721 7.15975 7.82461 8.39818 9.18829 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.002307 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.379079 B =12133.508203 C =12561.703746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 C -0.130 4.130 4 C 0.150 3.850 5 N -0.492 5.492 6 C 0.049 3.951 7 S 0.202 5.798 8 C -0.328 4.328 9 C 0.595 3.405 10 O -0.555 6.555 11 N -0.707 5.707 12 C 0.168 3.832 13 C -0.144 4.144 14 C -0.139 4.139 15 C 0.206 3.794 16 N -0.616 5.616 17 C -0.262 4.262 18 H 0.066 0.934 19 C -0.047 4.047 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.278 1.278 25 C 0.139 3.861 26 C -0.085 4.085 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.246 0.754 35 H 0.407 0.593 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.016 0.984 40 H 0.056 0.944 41 H 0.251 0.749 42 H 0.029 0.971 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 21.957 7.035 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.076 4.076 3 C -0.188 4.188 4 C 0.011 3.989 5 N -0.206 5.206 6 C -0.245 4.245 7 S 0.459 5.541 8 C -0.452 4.452 9 C 0.382 3.618 10 O -0.436 6.436 11 N -0.358 5.358 12 C 0.046 3.954 13 C -0.144 4.144 14 C -0.159 4.159 15 C 0.081 3.919 16 N -0.340 5.340 17 C -0.393 4.393 18 H 0.084 0.916 19 C -0.242 4.242 20 N -0.583 5.583 21 Si 0.797 3.203 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.204 1.204 25 C 0.014 3.986 26 C -0.124 4.124 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.262 0.738 35 H 0.242 0.758 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.915 21.665 6.978 24.099 hybrid contribution 0.227 -1.004 -0.585 1.184 sum -7.689 20.661 6.393 22.954 Atomic orbital electron populations 1.21660 0.92887 1.01304 1.02795 1.20374 0.97148 0.96745 0.93292 1.21692 1.00305 0.93951 1.02850 1.20830 0.93453 0.90632 0.93962 1.66111 1.22280 1.33584 0.98592 1.29498 0.96529 0.93671 1.04832 1.84001 1.51230 1.23611 0.95298 1.25439 1.16851 1.04153 0.98751 1.16922 0.77848 0.80077 0.86980 1.90699 1.54883 1.68785 1.29223 1.45965 1.53024 1.25263 1.11547 1.20325 0.98057 0.90757 0.86294 1.20590 0.95802 0.93747 1.04299 1.23043 0.99786 0.95672 0.97427 1.19416 0.82879 0.92353 0.97219 1.44307 1.02673 1.16545 1.70459 1.19405 1.07105 0.86410 1.26336 0.91620 1.25984 0.99241 0.99613 0.99368 1.70087 1.28028 1.16141 1.44089 0.85320 0.78685 0.78052 0.78223 1.20068 1.21985 1.20423 1.21181 0.96935 0.85406 0.95063 1.20733 0.91713 0.99057 1.00847 0.92044 0.90644 0.94059 0.87816 0.90805 0.91846 0.93675 0.73798 0.75753 0.91396 0.90679 0.87006 0.96664 0.92531 0.94004 0.95330 0.92268 0.91762 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.18 71.98 0.66 -1.84 16 2 C -0.05 -1.21 3.10 -11.54 -0.04 -1.25 16 3 C -0.13 -2.39 9.08 71.98 0.65 -1.74 16 4 C 0.15 3.39 5.40 42.09 0.23 3.62 16 5 N -0.49 -9.50 10.26 -190.40 -1.95 -11.45 16 6 C 0.05 0.63 12.22 130.60 1.60 2.23 16 7 S 0.20 2.99 22.36 -56.49 -1.26 1.73 16 8 C -0.33 -7.43 6.48 23.88 0.15 -7.27 16 9 C 0.59 15.96 7.77 86.45 0.67 16.63 16 10 O -0.55 -17.84 14.03 -4.30 -0.06 -17.90 16 11 N -0.71 -17.43 5.54 -470.83 -2.61 -20.04 16 12 C 0.17 4.59 5.66 85.63 0.48 5.07 16 13 C -0.14 -4.54 5.22 -15.14 -0.08 -4.62 16 14 C -0.14 -5.07 9.47 27.11 0.26 -4.81 16 15 C 0.21 9.78 5.14 85.42 0.44 10.22 16 16 N -0.62 -30.29 2.99 -703.02 -2.10 -32.39 16 17 C -0.26 -14.23 9.66 84.03 0.81 -13.42 16 18 H 0.07 3.46 7.83 -2.91 -0.02 3.44 16 19 C -0.05 -2.57 5.26 84.86 0.45 -2.12 16 20 N -0.94 -54.37 10.92 21.65 0.24 -54.13 16 21 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 C 0.14 5.44 6.59 86.32 0.57 6.01 16 26 C -0.08 -2.68 5.95 29.72 0.18 -2.50 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 2.77 5.04 -2.39 -0.01 2.76 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.13 8.05 -2.39 -0.02 1.11 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.25 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.41 8.86 7.66 -92.71 -0.71 8.15 16 36 H 0.07 1.92 7.78 -2.39 -0.02 1.90 16 37 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 38 H 0.11 3.65 7.73 -2.91 -0.02 3.63 16 39 H 0.02 0.80 8.13 -2.39 -0.02 0.78 16 40 H 0.06 3.06 6.60 -2.39 -0.02 3.04 16 41 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 2.26 7.96 -2.38 -0.02 2.24 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -67.40 379.57 1.60 -65.80 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.29 Total: 17.86 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 7.03 Total: 4.20 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.43 Total: -118.01 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.06 Total: -17.90 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.26 Total: 1.73 kcal Total: -67.40 1.60 -65.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001243984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.637 kcal (2) G-P(sol) polarization free energy of solvation -67.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds