Wall clock time and date at job start Tue Mar 31 2020 18:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.47047 * 2 1 4 4 C 1.50694 * 109.47411 * 239.99649 * 2 1 3 5 5 S 1.70947 * 125.58546 * 53.83330 * 4 2 1 6 6 C 1.70777 * 91.12633 * 179.97438 * 5 4 2 7 7 N 1.28638 * 110.55854 * 0.34703 * 6 5 4 8 8 C 1.33560 * 115.77183 * 359.73136 * 7 6 5 9 9 C 1.47269 * 123.14247 * 180.02562 * 8 7 6 10 10 O 1.21631 * 119.99570 * 185.20545 * 9 8 7 11 11 N 1.34772 * 120.00333 * 5.20037 * 9 8 7 12 12 C 1.46498 * 120.00453 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47399 * 179.97438 * 12 11 9 14 14 C 1.29452 * 117.69091 * 94.99904 * 13 12 11 15 15 C 1.50317 * 123.65077 * 180.85534 * 14 13 12 16 16 N 1.47006 * 109.16668 * 349.03073 * 15 14 13 17 17 C 1.36938 * 121.37363 * 222.96607 * 16 15 14 18 18 H 1.07998 * 120.00301 * 152.23459 * 17 16 15 19 19 C 1.38815 * 119.99874 * 332.23477 * 17 16 15 20 20 N 1.31616 * 120.00046 * 350.53220 * 19 17 16 21 21 Si 1.86810 * 119.99698 * 170.53174 * 19 17 16 22 22 H 1.48500 * 109.46937 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46906 * 120.00030 * 21 19 17 24 24 H 1.48501 * 109.46905 * 239.99842 * 21 19 17 25 25 C 1.47332 * 117.24876 * 42.94277 * 16 15 14 26 26 C 1.49966 * 117.69514 * 274.74542 * 13 12 11 27 27 H 1.09007 * 109.46711 * 60.00292 * 1 2 3 28 28 H 1.08998 * 109.47392 * 300.00657 * 1 2 3 29 29 H 1.08997 * 109.47522 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47182 * 119.99464 * 2 1 3 31 31 H 1.08994 * 109.46753 * 59.99824 * 3 2 1 32 32 H 1.08998 * 109.46723 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46743 * 299.99783 * 3 2 1 34 34 H 1.07996 * 124.71573 * 180.02562 * 6 5 4 35 35 H 0.97000 * 119.99773 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47125 * 300.00365 * 12 11 9 37 37 H 1.09004 * 109.46361 * 60.00372 * 12 11 9 38 38 H 1.08005 * 118.17779 * 0.88701 * 14 13 12 39 39 H 1.09008 * 109.51947 * 108.93651 * 15 14 13 40 40 H 1.08997 * 109.52858 * 229.11481 * 15 14 13 41 41 H 0.97005 * 119.99887 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.78150 * 57.81435 * 25 16 15 43 43 H 1.09004 * 109.77861 * 178.62190 * 25 16 15 44 44 H 1.09002 * 109.31173 * 281.28468 * 26 13 12 45 45 H 1.08995 * 109.31775 * 40.71536 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 16 1.5905 -0.3443 -2.8406 6 6 2.5982 -1.5881 -3.4356 7 7 3.1845 -2.1971 -2.4660 8 6 2.9012 -1.7464 -1.2411 9 6 3.4812 -2.3235 -0.0167 10 8 3.1121 -1.9319 1.0741 11 7 4.4209 -3.2856 -0.1047 12 6 4.9983 -3.8593 1.1133 13 6 6.0165 -4.9064 0.7417 14 6 7.2574 -4.5433 0.6789 15 6 8.3789 -5.4712 0.3039 16 7 7.8779 -6.8532 0.2908 17 6 8.6052 -7.8804 0.8303 18 1 8.1013 -8.7521 1.2209 19 6 9.9904 -7.8012 0.8752 20 7 10.6153 -6.8343 0.2374 21 14 10.9674 -9.0672 1.8409 22 1 10.0358 -10.0421 2.4628 23 1 11.8934 -9.7811 0.9256 24 1 11.7496 -8.3841 2.9025 25 6 6.5607 -7.0874 -0.3263 26 6 5.5213 -6.2969 0.4764 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.7216 -1.8329 -4.4802 35 1 4.7154 -3.5976 -0.9746 36 1 5.4809 -3.0720 1.6923 37 1 4.2084 -4.3165 1.7093 38 1 7.5006 -3.5165 0.9093 39 1 8.7524 -5.2097 -0.6863 40 1 9.1843 -5.3826 1.0329 41 1 11.5833 -6.7792 0.2685 42 1 6.5719 -6.7446 -1.3610 43 1 6.3208 -8.1502 -0.2917 44 1 5.3342 -6.8000 1.4251 45 1 4.5921 -6.2466 -0.0912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001361804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:58 Heat of formation + Delta-G solvation = 37.218210 kcal Electronic energy + Delta-G solvation = -26107.023342 eV Core-core repulsion = 22444.936382 eV Total energy + Delta-G solvation = -3662.086960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77605 -38.81110 -37.66810 -36.10944 -34.83846 -32.86416 -30.94304 -30.09067 -29.66840 -27.47831 -27.31164 -25.73982 -24.17914 -22.80326 -22.40553 -21.72471 -21.02219 -19.94702 -18.25926 -17.66538 -17.07258 -16.08963 -15.70046 -15.62835 -15.41482 -15.04486 -14.56352 -14.37464 -14.19624 -14.02040 -13.75158 -13.53539 -13.35913 -13.34944 -12.88905 -12.55699 -12.34143 -12.24134 -12.01884 -11.79563 -11.58222 -11.55056 -11.42588 -11.29659 -10.88231 -10.77139 -10.35669 -10.28314 -10.09329 -9.84753 -9.77211 -9.71688 -9.56625 -9.28975 -8.89476 -8.69378 -8.04930 -6.68763 -5.79702 -3.23241 0.27323 0.94182 1.35596 1.80974 2.62792 3.27952 3.37172 3.44533 3.46652 3.53935 3.94869 4.36770 4.48483 4.57685 4.78745 4.83606 5.06785 5.17607 5.24536 5.27995 5.36714 5.42422 5.48780 5.56686 5.57458 5.65050 5.76941 5.83068 5.92064 5.93121 6.07031 6.13756 6.19553 6.36472 6.49882 6.56980 6.75879 6.89928 7.11133 7.19263 7.28029 7.35225 7.63733 7.74616 7.83584 8.19886 8.40735 9.20514 9.81588 10.41588 11.30586 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.002224 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.390282 B =12588.851894 C =12950.504064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C -0.141 4.141 4 C -0.168 4.168 5 S 0.194 5.806 6 C -0.005 4.005 7 N -0.435 5.435 8 C -0.004 4.004 9 C 0.592 3.408 10 O -0.538 6.538 11 N -0.699 5.699 12 C 0.156 3.844 13 C -0.167 4.167 14 C -0.123 4.123 15 C 0.195 3.805 16 N -0.595 5.595 17 C -0.245 4.245 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.911 5.911 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.144 3.856 26 C -0.090 4.090 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.136 0.864 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.205 0.795 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.278 16.304 -6.315 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.292 4.292 5 S 0.450 5.550 6 C -0.305 4.305 7 N -0.149 5.149 8 C -0.139 4.139 9 C 0.376 3.624 10 O -0.417 6.417 11 N -0.349 5.349 12 C 0.034 3.966 13 C -0.168 4.168 14 C -0.144 4.144 15 C 0.070 3.930 16 N -0.319 5.319 17 C -0.375 4.375 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.556 5.556 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.017 3.983 26 C -0.129 4.129 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.247 0.753 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.584 16.782 -6.151 27.261 hybrid contribution 1.206 -1.127 0.582 1.750 sum -19.377 15.655 -5.569 25.526 Atomic orbital electron populations 1.21906 0.93806 1.02288 1.02119 1.20317 0.95880 0.95976 0.95102 1.21869 1.01616 0.94369 1.02057 1.25680 1.01547 1.00664 1.01336 1.82795 1.42402 1.33528 0.96299 1.28338 1.00106 0.98377 1.03662 1.66956 1.22617 1.27271 0.98044 1.20390 1.02461 0.98568 0.92441 1.17064 0.79364 0.79515 0.86492 1.90643 1.61889 1.61705 1.27465 1.46058 1.39514 1.38070 1.11266 1.20534 0.95547 0.94704 0.85802 1.20470 0.93964 0.95303 1.07041 1.23316 0.96209 0.99741 0.95090 1.19763 0.91702 0.81609 0.99910 1.44096 1.17315 1.03344 1.67116 1.19217 0.88058 0.98323 1.31878 0.91457 1.25116 0.96829 0.98377 0.99455 1.69972 1.07785 1.33688 1.44188 0.86150 0.80011 0.80881 0.79321 1.20279 1.21666 1.21607 1.20998 0.86193 0.97330 0.93744 1.20782 0.98353 0.93069 1.00684 0.92840 0.91452 0.92282 0.84628 0.91496 0.92311 0.92855 0.77885 0.75309 0.91421 0.91356 0.88839 0.94048 0.88902 0.93628 0.95803 0.92472 0.91747 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.04 37.16 0.34 -0.79 16 2 C -0.05 -0.52 3.12 -91.77 -0.29 -0.80 16 3 C -0.14 -1.17 9.17 37.16 0.34 -0.82 16 4 C -0.17 -1.80 5.04 -35.39 -0.18 -1.98 16 5 S 0.19 1.43 22.41 -107.50 -2.41 -0.98 16 6 C -0.01 -0.04 12.17 51.42 0.63 0.58 16 7 N -0.44 -5.25 10.13 -12.36 -0.13 -5.38 16 8 C 0.00 -0.06 6.70 -84.52 -0.57 -0.62 16 9 C 0.59 8.90 7.79 -12.59 -0.10 8.80 16 10 O -0.54 -8.94 13.86 5.25 0.07 -8.86 16 11 N -0.70 -10.36 5.54 -62.61 -0.35 -10.71 16 12 C 0.16 2.44 5.66 -5.19 -0.03 2.41 16 13 C -0.17 -2.96 5.22 -100.99 -0.53 -3.48 16 14 C -0.12 -2.39 9.47 -35.78 -0.34 -2.72 16 15 C 0.20 4.66 5.17 -5.10 -0.03 4.63 16 16 N -0.60 -14.98 3.00 -173.57 -0.52 -15.50 16 17 C -0.25 -6.73 9.70 -15.06 -0.15 -6.88 16 18 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 19 C 0.00 0.00 5.12 -17.43 -0.09 -0.09 16 20 N -0.91 -26.26 11.00 55.49 0.61 -25.65 16 21 Si 0.91 21.75 29.56 -169.99 -5.03 16.73 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.14 3.02 6.59 -3.44 -0.02 3.00 16 26 C -0.09 -1.61 5.95 -28.09 -0.17 -1.78 16 27 H 0.05 0.35 7.82 -51.93 -0.41 -0.06 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.14 1.71 4.95 -51.93 -0.26 1.45 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.41 5.98 7.99 -40.82 -0.33 5.66 16 36 H 0.07 1.07 7.78 -51.93 -0.40 0.66 16 37 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 38 H 0.09 1.64 7.73 -52.48 -0.41 1.23 16 39 H 0.04 1.06 8.14 -51.92 -0.42 0.64 16 40 H 0.09 2.46 6.50 -51.93 -0.34 2.13 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -31.20 379.07 -9.95 -41.15 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.75 Total: 4.02 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.17 Total: -0.53 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.38 Total: -57.23 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.07 Total: -8.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.41 Total: -0.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.20 -9.95 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001361804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.373 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds