Wall clock time and date at job start Tue Mar 31 2020 18:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.47047 * 2 1 4 4 C 1.50694 * 109.47411 * 239.99649 * 2 1 3 5 5 S 1.70947 * 125.58546 * 53.83330 * 4 2 1 6 6 C 1.70777 * 91.12633 * 179.97438 * 5 4 2 7 7 N 1.28638 * 110.55854 * 0.34703 * 6 5 4 8 8 C 1.33560 * 115.77183 * 359.73136 * 7 6 5 9 9 C 1.47269 * 123.14247 * 180.02562 * 8 7 6 10 10 O 1.21631 * 119.99570 * 185.20545 * 9 8 7 11 11 N 1.34772 * 120.00333 * 5.20037 * 9 8 7 12 12 C 1.46498 * 120.00453 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47399 * 179.97438 * 12 11 9 14 14 C 1.29452 * 117.69091 * 94.99904 * 13 12 11 15 15 C 1.50317 * 123.65077 * 180.85534 * 14 13 12 16 16 N 1.47006 * 109.16668 * 349.03073 * 15 14 13 17 17 C 1.36938 * 121.37363 * 222.96607 * 16 15 14 18 18 H 1.07998 * 120.00301 * 152.23459 * 17 16 15 19 19 C 1.38815 * 119.99874 * 332.23477 * 17 16 15 20 20 N 1.31616 * 120.00046 * 350.53220 * 19 17 16 21 21 Si 1.86810 * 119.99698 * 170.53174 * 19 17 16 22 22 H 1.48500 * 109.46937 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46906 * 120.00030 * 21 19 17 24 24 H 1.48501 * 109.46905 * 239.99842 * 21 19 17 25 25 C 1.47332 * 117.24876 * 42.94277 * 16 15 14 26 26 C 1.49966 * 117.69514 * 274.74542 * 13 12 11 27 27 H 1.09007 * 109.46711 * 60.00292 * 1 2 3 28 28 H 1.08998 * 109.47392 * 300.00657 * 1 2 3 29 29 H 1.08997 * 109.47522 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47182 * 119.99464 * 2 1 3 31 31 H 1.08994 * 109.46753 * 59.99824 * 3 2 1 32 32 H 1.08998 * 109.46723 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46743 * 299.99783 * 3 2 1 34 34 H 1.07996 * 124.71573 * 180.02562 * 6 5 4 35 35 H 0.97000 * 119.99773 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47125 * 300.00365 * 12 11 9 37 37 H 1.09004 * 109.46361 * 60.00372 * 12 11 9 38 38 H 1.08005 * 118.17779 * 0.88701 * 14 13 12 39 39 H 1.09008 * 109.51947 * 108.93651 * 15 14 13 40 40 H 1.08997 * 109.52858 * 229.11481 * 15 14 13 41 41 H 0.97005 * 119.99887 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.78150 * 57.81435 * 25 16 15 43 43 H 1.09004 * 109.77861 * 178.62190 * 25 16 15 44 44 H 1.09002 * 109.31173 * 281.28468 * 26 13 12 45 45 H 1.08995 * 109.31775 * 40.71536 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 16 1.5905 -0.3443 -2.8406 6 6 2.5982 -1.5881 -3.4356 7 7 3.1845 -2.1971 -2.4660 8 6 2.9012 -1.7464 -1.2411 9 6 3.4812 -2.3235 -0.0167 10 8 3.1121 -1.9319 1.0741 11 7 4.4209 -3.2856 -0.1047 12 6 4.9983 -3.8593 1.1133 13 6 6.0165 -4.9064 0.7417 14 6 7.2574 -4.5433 0.6789 15 6 8.3789 -5.4712 0.3039 16 7 7.8779 -6.8532 0.2908 17 6 8.6052 -7.8804 0.8303 18 1 8.1013 -8.7521 1.2209 19 6 9.9904 -7.8012 0.8752 20 7 10.6153 -6.8343 0.2374 21 14 10.9674 -9.0672 1.8409 22 1 10.0358 -10.0421 2.4628 23 1 11.8934 -9.7811 0.9256 24 1 11.7496 -8.3841 2.9025 25 6 6.5607 -7.0874 -0.3263 26 6 5.5213 -6.2969 0.4764 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.7216 -1.8329 -4.4802 35 1 4.7154 -3.5976 -0.9746 36 1 5.4809 -3.0720 1.6923 37 1 4.2084 -4.3165 1.7093 38 1 7.5006 -3.5165 0.9093 39 1 8.7524 -5.2097 -0.6863 40 1 9.1843 -5.3826 1.0329 41 1 11.5833 -6.7792 0.2685 42 1 6.5719 -6.7446 -1.3610 43 1 6.3208 -8.1502 -0.2917 44 1 5.3342 -6.8000 1.4251 45 1 4.5921 -6.2466 -0.0912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001361804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:57 Heat of formation + Delta-G solvation = 17.939007 kcal Electronic energy + Delta-G solvation = -26107.859351 eV Core-core repulsion = 22444.936382 eV Total energy + Delta-G solvation = -3662.922969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70169 -39.95691 -39.16622 -36.96037 -36.22815 -34.53614 -32.67285 -31.47557 -30.87799 -28.78629 -28.09327 -26.90603 -25.64679 -24.43232 -23.57195 -22.72708 -22.39180 -21.00191 -19.51322 -19.02628 -18.16863 -17.35277 -17.03698 -16.98003 -16.62219 -16.37145 -15.74916 -15.61291 -15.28499 -15.17827 -15.15652 -14.87057 -14.65093 -14.40127 -14.00114 -13.95318 -13.63355 -13.29636 -13.12339 -13.05662 -12.96094 -12.78973 -12.64712 -12.45084 -12.29760 -12.22271 -12.17676 -12.06420 -11.74947 -11.28190 -10.82806 -10.75771 -10.70355 -10.40799 -10.27223 -9.85909 -9.68786 -8.71477 -7.89142 -5.35869 -0.47800 0.27241 0.64204 0.93233 1.16654 1.46107 1.47260 1.57886 2.27346 2.40447 2.49649 3.15368 3.28912 3.59640 3.60694 3.81283 3.86716 3.93821 4.09211 4.16900 4.33387 4.40232 4.50351 4.56863 4.59609 4.69412 4.71198 4.81207 4.86638 4.88894 4.89291 4.94764 5.07423 5.13275 5.19276 5.23827 5.29581 5.36935 5.46612 5.50825 5.60489 5.72980 6.13494 6.27162 6.34890 6.59033 7.07874 7.12974 7.80887 8.36991 9.19429 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.002224 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.390282 B =12588.851894 C =12950.504064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C -0.138 4.138 4 C -0.183 4.183 5 S 0.278 5.722 6 C -0.010 4.010 7 N -0.468 5.468 8 C -0.034 4.034 9 C 0.588 3.412 10 O -0.561 6.561 11 N -0.699 5.699 12 C 0.167 3.833 13 C -0.141 4.141 14 C -0.141 4.141 15 C 0.207 3.793 16 N -0.615 5.615 17 C -0.257 4.257 18 H 0.070 0.930 19 C -0.053 4.053 20 N -0.941 5.941 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.140 3.860 26 C -0.083 4.083 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.237 0.763 35 H 0.413 0.587 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.013 0.987 40 H 0.058 0.942 41 H 0.250 0.750 42 H 0.025 0.975 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.874 17.295 -7.241 29.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.195 4.195 4 C -0.308 4.308 5 S 0.535 5.465 6 C -0.309 4.309 7 N -0.183 5.183 8 C -0.168 4.168 9 C 0.374 3.626 10 O -0.442 6.442 11 N -0.349 5.349 12 C 0.044 3.956 13 C -0.142 4.142 14 C -0.161 4.161 15 C 0.082 3.918 16 N -0.339 5.339 17 C -0.387 4.387 18 H 0.087 0.913 19 C -0.248 4.248 20 N -0.587 5.587 21 Si 0.800 3.200 22 H -0.190 1.190 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.014 3.986 26 C -0.122 4.122 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.253 0.747 35 H 0.249 0.751 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.219 17.775 -7.095 30.090 hybrid contribution 1.872 -1.377 0.766 2.447 sum -21.347 16.398 -6.329 27.652 Atomic orbital electron populations 1.21887 0.92126 1.02115 1.03560 1.20284 0.97230 0.96393 0.93772 1.21853 1.00594 0.93585 1.03510 1.25975 1.00919 1.00072 1.03874 1.82465 1.40112 1.31346 0.92587 1.28963 0.99234 0.98105 1.04557 1.66937 1.24311 1.28834 0.98205 1.20169 1.04275 1.00168 0.92182 1.17433 0.78931 0.79056 0.87229 1.90640 1.62590 1.62330 1.28618 1.45948 1.39755 1.38367 1.10809 1.20327 0.94947 0.94005 0.86290 1.20599 0.93770 0.95759 1.04065 1.22992 0.95506 0.99765 0.97884 1.19385 0.92475 0.82327 0.97584 1.44370 1.18540 1.03362 1.67633 1.19541 0.88642 0.98855 1.31691 0.91269 1.25890 0.97844 1.00376 1.00711 1.70143 1.07625 1.35341 1.45629 0.85136 0.78461 0.78695 0.77752 1.19050 1.21766 1.21771 1.21160 0.85091 0.98260 0.94057 1.20712 0.98406 0.92430 1.00659 0.91026 0.90409 0.93236 0.87730 0.90424 0.93894 0.91036 0.74661 0.75113 0.91494 0.90829 0.87086 0.96909 0.92358 0.94071 0.95702 0.92092 0.91511 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.04 71.98 0.65 -1.25 16 2 C -0.06 -1.05 3.12 -11.54 -0.04 -1.09 16 3 C -0.14 -2.05 9.17 71.99 0.66 -1.39 16 4 C -0.18 -3.65 5.04 24.98 0.13 -3.53 16 5 S 0.28 3.20 22.41 -56.49 -1.27 1.93 16 6 C -0.01 -0.14 12.17 130.71 1.59 1.45 16 7 N -0.47 -10.67 10.13 -193.03 -1.96 -12.63 16 8 C -0.03 -0.86 6.70 40.56 0.27 -0.59 16 9 C 0.59 17.66 7.79 86.62 0.67 18.34 16 10 O -0.56 -18.90 13.86 -4.13 -0.06 -18.95 16 11 N -0.70 -20.37 5.54 -470.26 -2.61 -22.97 16 12 C 0.17 5.08 5.66 85.63 0.48 5.56 16 13 C -0.14 -4.90 5.22 -15.14 -0.08 -4.97 16 14 C -0.14 -5.55 9.47 27.11 0.26 -5.29 16 15 C 0.21 10.32 5.17 85.42 0.44 10.76 16 16 N -0.61 -31.56 3.00 -703.05 -2.11 -33.67 16 17 C -0.26 -14.35 9.70 84.03 0.82 -13.53 16 18 H 0.07 3.75 7.85 -2.91 -0.02 3.72 16 19 C -0.05 -3.02 5.12 84.86 0.43 -2.58 16 20 N -0.94 -56.11 11.00 21.65 0.24 -55.87 16 21 Si 0.97 45.42 29.56 68.60 2.03 47.45 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 25 C 0.14 5.82 6.59 86.32 0.57 6.39 16 26 C -0.08 -2.87 5.95 29.71 0.18 -2.69 16 27 H 0.07 0.70 7.82 -2.38 -0.02 0.68 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.11 2.68 4.95 -2.38 -0.01 2.66 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.24 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.41 11.78 7.99 -92.71 -0.74 11.04 16 36 H 0.07 2.07 7.78 -2.39 -0.02 2.05 16 37 H 0.07 2.19 8.11 -2.38 -0.02 2.17 16 38 H 0.11 3.94 7.73 -2.91 -0.02 3.92 16 39 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.06 3.26 6.50 -2.39 -0.02 3.25 16 41 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 42 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 2.45 7.96 -2.38 -0.02 2.43 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -69.99 379.07 1.57 -68.42 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.26 Total: 20.71 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 7.04 Total: 5.58 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -6.43 Total: -125.14 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.06 Total: -18.95 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.27 Total: 1.93 kcal Total: -69.99 1.57 -68.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001361804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.358 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds