Wall clock time and date at job start Tue Mar 31 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47249 * 2 1 4 4 N 1.30942 * 122.90392 * 270.19270 * 3 2 1 5 5 C 1.29428 * 117.36692 * 180.34492 * 4 3 2 6 6 S 1.70951 * 110.38968 * 359.70884 * 5 4 3 7 7 C 1.35664 * 122.90690 * 89.99871 * 3 2 1 8 8 C 1.46682 * 126.12905 * 359.95961 * 7 3 2 9 9 O 1.21685 * 119.99918 * 359.72181 * 8 7 3 10 10 N 1.34782 * 119.99606 * 179.71519 * 8 7 3 11 11 C 1.46495 * 119.99507 * 180.02562 * 10 8 7 12 12 H 1.09003 * 115.56928 * 350.71028 * 11 10 8 13 13 C 1.53040 * 117.50335 * 136.41560 * 11 10 8 14 14 C 1.52822 * 117.50158 * 205.00150 * 11 10 8 15 15 C 1.53178 * 117.71571 * 144.90243 * 14 11 10 16 16 C 1.53354 * 108.76913 * 158.87857 * 15 14 11 17 17 N 1.46839 * 108.81141 * 51.30384 * 16 15 14 18 18 C 1.36943 * 120.37901 * 123.11274 * 17 16 15 19 19 H 1.07999 * 119.99950 * 331.22649 * 18 17 16 20 20 C 1.38811 * 120.00018 * 151.22549 * 18 17 16 21 21 N 1.31614 * 120.00086 * 342.28730 * 20 18 17 22 22 Si 1.86795 * 119.99850 * 162.29129 * 20 18 17 23 23 H 1.48497 * 109.47278 * 269.99729 * 22 20 18 24 24 H 1.48506 * 109.47387 * 29.99734 * 22 20 18 25 25 H 1.48499 * 109.47414 * 150.00053 * 22 20 18 26 26 C 1.46844 * 119.24249 * 303.37737 * 17 16 15 27 27 C 1.52871 * 109.07030 * 56.58865 * 26 17 16 28 28 H 1.09007 * 109.46950 * 300.00676 * 1 2 3 29 29 H 1.08994 * 109.47034 * 59.99982 * 1 2 3 30 30 H 1.08996 * 109.47570 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47197 * 239.99771 * 2 1 3 32 32 H 1.09003 * 109.46867 * 119.99395 * 2 1 3 33 33 H 1.08003 * 124.80885 * 179.67957 * 5 4 3 34 34 H 0.96995 * 120.00375 * 0.02562 * 10 8 7 35 35 H 1.09003 * 117.50143 * 0.02562 * 13 11 10 36 36 H 1.08991 * 117.53174 * 214.93980 * 13 11 10 37 37 H 1.09003 * 109.59144 * 39.08914 * 15 14 11 38 38 H 1.09007 * 109.58622 * 278.65860 * 15 14 11 39 39 H 1.08997 * 109.57212 * 291.50879 * 16 15 14 40 40 H 1.08995 * 109.58051 * 171.10607 * 16 15 14 41 41 H 0.96999 * 120.00333 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.57737 * 176.41847 * 26 17 16 43 43 H 1.08990 * 109.58155 * 296.82534 * 26 17 16 44 44 H 1.09009 * 109.66214 * 189.04410 * 27 26 17 45 45 H 1.09001 * 109.45030 * 68.65491 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2660 2.0927 -1.0994 5 6 2.7023 3.3047 -0.9745 6 16 2.8532 3.7162 0.6779 7 6 2.2780 2.1157 1.1390 8 6 2.1023 1.6212 2.5087 9 8 1.6961 0.4901 2.6998 10 7 2.3908 2.4196 3.5556 11 6 2.2158 1.9255 4.9235 12 1 1.7034 0.9678 5.0159 13 6 3.3230 2.2348 5.9337 14 6 1.9807 2.9606 6.0230 15 6 1.0413 2.5793 7.1713 16 6 1.3456 3.4772 8.3766 17 7 1.3339 4.8785 7.9380 18 6 0.4985 5.7843 8.5356 19 1 -0.4369 5.4555 8.9637 20 6 0.8541 7.1249 8.5911 21 7 2.1062 7.4822 8.3992 22 14 -0.4446 8.4219 8.9383 23 1 -1.0340 8.8876 7.6573 24 1 -1.5114 7.8386 9.7909 25 1 0.1791 9.5709 9.6426 26 6 2.2241 5.2963 6.8474 27 6 1.9419 4.4366 5.6153 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9383 3.9629 -1.7977 34 1 2.7143 3.3212 3.4032 35 1 4.1814 2.8063 5.5805 36 1 3.5391 1.4812 6.6909 37 1 1.2012 1.5359 7.4432 38 1 0.0066 2.7236 6.8602 39 1 2.3277 3.2284 8.7786 40 1 0.5861 3.3283 9.1441 41 1 2.3547 8.4190 8.4383 42 1 2.0424 6.3442 6.6088 43 1 3.2621 5.1635 7.1520 44 1 2.6996 4.6257 4.8547 45 1 0.9558 4.6809 5.2204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016654695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:17 Heat of formation + Delta-G solvation = 50.935663 kcal Electronic energy + Delta-G solvation = -26589.832070 eV Core-core repulsion = 22928.339943 eV Total energy + Delta-G solvation = -3661.492127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69020 -39.65626 -38.29340 -35.55453 -33.67956 -33.29521 -31.60986 -30.18862 -29.98602 -28.25111 -26.40876 -24.37554 -23.56876 -22.92626 -22.50128 -21.34978 -20.59057 -19.60883 -18.62244 -18.24161 -17.10085 -16.46802 -16.19818 -15.55262 -15.23787 -14.86162 -14.48858 -14.37005 -14.22574 -14.14294 -13.78041 -13.60960 -13.41810 -13.05855 -12.68848 -12.62532 -12.34158 -12.14135 -11.78438 -11.56143 -11.49349 -11.43707 -11.08184 -10.99704 -10.76771 -10.52134 -10.32415 -10.29775 -10.02003 -9.91166 -9.86288 -9.75128 -9.62379 -9.41798 -9.19362 -8.54530 -8.47912 -6.67136 -5.81819 -3.24910 -0.05125 0.88410 1.26027 2.17498 2.91411 2.94768 3.35661 3.43118 3.44108 3.81743 4.12781 4.47435 4.54647 4.68615 4.79132 4.91546 5.07741 5.08981 5.20685 5.26200 5.30348 5.36109 5.46480 5.59635 5.75726 5.78178 5.82016 6.00040 6.01058 6.05520 6.06735 6.17249 6.24358 6.39834 6.48234 6.52632 6.59926 6.66944 6.79634 6.96783 7.23182 7.30036 7.37369 7.60772 7.77527 8.00023 8.43674 9.19130 9.82612 10.39090 11.26089 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.002826 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.069275 B = 9906.897000 C =10696.390346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 C 0.147 3.853 4 N -0.474 5.474 5 C 0.035 3.965 6 S 0.166 5.834 7 C -0.292 4.292 8 C 0.599 3.401 9 O -0.522 6.522 10 N -0.688 5.688 11 C 0.069 3.931 12 H 0.135 0.865 13 C -0.181 4.181 14 C -0.096 4.096 15 C -0.098 4.098 16 C 0.149 3.851 17 N -0.589 5.589 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.291 1.291 26 C 0.174 3.826 27 C -0.106 4.106 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.206 0.794 34 H 0.399 0.601 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.018 0.982 44 H 0.042 0.958 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -10.167 -17.077 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C 0.009 3.991 4 N -0.187 5.187 5 C -0.261 4.261 6 S 0.421 5.579 7 C -0.416 4.416 8 C 0.385 3.615 9 O -0.401 6.401 10 N -0.337 5.337 11 C -0.037 4.037 12 H 0.153 0.847 13 C -0.219 4.219 14 C -0.097 4.097 15 C -0.137 4.137 16 C 0.023 3.977 17 N -0.312 5.312 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.204 1.204 25 H -0.218 1.218 26 C 0.048 3.952 27 C -0.145 4.145 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.223 0.777 34 H 0.235 0.765 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.036 0.964 44 H 0.061 0.939 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.010 -10.025 -16.935 19.909 hybrid contribution -0.539 0.629 -0.130 0.838 sum 2.471 -9.396 -17.066 19.637 Atomic orbital electron populations 1.21601 0.93758 1.02212 1.01900 1.20435 0.96820 0.88236 1.04507 1.20754 0.95180 0.98265 0.84883 1.66124 1.15182 1.06152 1.31249 1.28740 1.00807 0.96051 1.00457 1.84137 1.58170 1.12154 1.03400 1.25548 1.17926 0.98983 0.99168 1.16597 0.77646 0.85078 0.82225 1.90772 1.46217 1.18268 1.84811 1.45302 1.66580 1.16661 1.05175 1.21932 1.04092 1.00183 0.77462 0.84720 1.23549 0.93281 1.03696 1.01395 1.21980 0.97268 0.94008 0.96450 1.21701 0.98076 0.98514 0.95454 1.20857 0.98264 0.85496 0.93100 1.43956 1.46304 1.03920 1.36976 1.19212 0.97772 0.88237 1.33050 0.91727 1.25042 0.95608 0.98338 1.00602 1.70031 1.14845 1.16055 1.53649 0.86307 0.81203 0.81481 0.77896 1.21464 1.20404 1.21783 1.20636 0.92158 0.98039 0.84377 1.21753 1.00386 0.92317 1.00058 0.92297 0.92934 0.91771 0.90383 0.87639 0.77699 0.76480 0.88878 0.88221 0.92752 0.91771 0.96205 0.92603 0.93650 0.89204 0.96406 0.93909 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.06 -0.67 5.74 -27.88 -0.16 -0.83 16 3 C 0.15 1.76 6.04 -83.89 -0.51 1.25 16 4 N -0.47 -5.24 10.50 -11.53 -0.12 -5.36 16 5 C 0.03 0.29 12.22 51.75 0.63 0.92 16 6 S 0.17 1.47 22.35 -107.50 -2.40 -0.93 16 7 C -0.29 -3.52 6.48 -37.09 -0.24 -3.76 16 8 C 0.60 8.31 7.78 -12.85 -0.10 8.21 16 9 O -0.52 -8.29 13.84 5.20 0.07 -8.22 16 10 N -0.69 -9.13 5.34 -55.18 -0.29 -9.42 16 11 C 0.07 0.97 6.14 -68.00 -0.42 0.56 16 12 H 0.14 1.98 7.40 -51.93 -0.38 1.60 16 13 C -0.18 -2.53 9.87 -26.78 -0.26 -2.80 16 14 C -0.10 -1.53 1.94 -154.49 -0.30 -1.83 16 15 C -0.10 -1.65 5.83 -26.46 -0.15 -1.80 16 16 C 0.15 3.03 6.52 -3.67 -0.02 3.01 16 17 N -0.59 -14.30 2.94 -172.56 -0.51 -14.81 16 18 C -0.25 -6.79 9.54 -15.06 -0.14 -6.94 16 19 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.07 4.89 -17.43 -0.09 -0.01 16 21 N -0.90 -25.52 11.23 55.49 0.62 -24.90 16 22 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.17 3.95 5.37 -3.92 -0.02 3.93 16 27 C -0.11 -1.89 5.36 -26.71 -0.14 -2.03 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 1.29 6.02 -51.93 -0.31 0.98 16 33 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.40 4.83 6.30 -40.82 -0.26 4.58 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 0.79 8.10 -51.93 -0.42 0.36 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.09 2.30 5.94 -51.93 -0.31 1.99 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.04 0.66 6.75 -51.92 -0.35 0.31 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -30.77 374.82 -10.22 -40.99 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.64 Total: 3.91 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.56 Total: -3.18 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.30 Total: -54.49 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.22 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.40 Total: -0.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.77 -10.22 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016654695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.926 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds