Wall clock time and date at job start Tue Mar 31 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47249 * 2 1 4 4 N 1.30942 * 122.90392 * 270.19270 * 3 2 1 5 5 C 1.29428 * 117.36692 * 180.34492 * 4 3 2 6 6 S 1.70951 * 110.38968 * 359.70884 * 5 4 3 7 7 C 1.35664 * 122.90690 * 89.99871 * 3 2 1 8 8 C 1.46682 * 126.12905 * 359.95961 * 7 3 2 9 9 O 1.21685 * 119.99918 * 359.72181 * 8 7 3 10 10 N 1.34782 * 119.99606 * 179.71519 * 8 7 3 11 11 C 1.46495 * 119.99507 * 180.02562 * 10 8 7 12 12 H 1.09003 * 115.56928 * 350.71028 * 11 10 8 13 13 C 1.53040 * 117.50335 * 136.41560 * 11 10 8 14 14 C 1.52822 * 117.50158 * 205.00150 * 11 10 8 15 15 C 1.53178 * 117.71571 * 144.90243 * 14 11 10 16 16 C 1.53354 * 108.76913 * 158.87857 * 15 14 11 17 17 N 1.46839 * 108.81141 * 51.30384 * 16 15 14 18 18 C 1.36943 * 120.37901 * 123.11274 * 17 16 15 19 19 H 1.07999 * 119.99950 * 331.22649 * 18 17 16 20 20 C 1.38811 * 120.00018 * 151.22549 * 18 17 16 21 21 N 1.31614 * 120.00086 * 342.28730 * 20 18 17 22 22 Si 1.86795 * 119.99850 * 162.29129 * 20 18 17 23 23 H 1.48497 * 109.47278 * 269.99729 * 22 20 18 24 24 H 1.48506 * 109.47387 * 29.99734 * 22 20 18 25 25 H 1.48499 * 109.47414 * 150.00053 * 22 20 18 26 26 C 1.46844 * 119.24249 * 303.37737 * 17 16 15 27 27 C 1.52871 * 109.07030 * 56.58865 * 26 17 16 28 28 H 1.09007 * 109.46950 * 300.00676 * 1 2 3 29 29 H 1.08994 * 109.47034 * 59.99982 * 1 2 3 30 30 H 1.08996 * 109.47570 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47197 * 239.99771 * 2 1 3 32 32 H 1.09003 * 109.46867 * 119.99395 * 2 1 3 33 33 H 1.08003 * 124.80885 * 179.67957 * 5 4 3 34 34 H 0.96995 * 120.00375 * 0.02562 * 10 8 7 35 35 H 1.09003 * 117.50143 * 0.02562 * 13 11 10 36 36 H 1.08991 * 117.53174 * 214.93980 * 13 11 10 37 37 H 1.09003 * 109.59144 * 39.08914 * 15 14 11 38 38 H 1.09007 * 109.58622 * 278.65860 * 15 14 11 39 39 H 1.08997 * 109.57212 * 291.50879 * 16 15 14 40 40 H 1.08995 * 109.58051 * 171.10607 * 16 15 14 41 41 H 0.96999 * 120.00333 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.57737 * 176.41847 * 26 17 16 43 43 H 1.08990 * 109.58155 * 296.82534 * 26 17 16 44 44 H 1.09009 * 109.66214 * 189.04410 * 27 26 17 45 45 H 1.09001 * 109.45030 * 68.65491 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2660 2.0927 -1.0994 5 6 2.7023 3.3047 -0.9745 6 16 2.8532 3.7162 0.6779 7 6 2.2780 2.1157 1.1390 8 6 2.1023 1.6212 2.5087 9 8 1.6961 0.4901 2.6998 10 7 2.3908 2.4196 3.5556 11 6 2.2158 1.9255 4.9235 12 1 1.7034 0.9678 5.0159 13 6 3.3230 2.2348 5.9337 14 6 1.9807 2.9606 6.0230 15 6 1.0413 2.5793 7.1713 16 6 1.3456 3.4772 8.3766 17 7 1.3339 4.8785 7.9380 18 6 0.4985 5.7843 8.5356 19 1 -0.4369 5.4555 8.9637 20 6 0.8541 7.1249 8.5911 21 7 2.1062 7.4822 8.3992 22 14 -0.4446 8.4219 8.9383 23 1 -1.0340 8.8876 7.6573 24 1 -1.5114 7.8386 9.7909 25 1 0.1791 9.5709 9.6426 26 6 2.2241 5.2963 6.8474 27 6 1.9419 4.4366 5.6153 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9383 3.9629 -1.7977 34 1 2.7143 3.3212 3.4032 35 1 4.1814 2.8063 5.5805 36 1 3.5391 1.4812 6.6909 37 1 1.2012 1.5359 7.4432 38 1 0.0066 2.7236 6.8602 39 1 2.3277 3.2284 8.7786 40 1 0.5861 3.3283 9.1441 41 1 2.3547 8.4190 8.4383 42 1 2.0424 6.3442 6.6088 43 1 3.2621 5.1635 7.1520 44 1 2.6996 4.6257 4.8547 45 1 0.9558 4.6809 5.2204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016654695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:16 Heat of formation + Delta-G solvation = 32.526659 kcal Electronic energy + Delta-G solvation = -26590.630344 eV Core-core repulsion = 22928.339943 eV Total energy + Delta-G solvation = -3662.290401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61186 -40.73744 -39.51882 -37.14689 -34.73556 -34.40539 -33.33999 -31.79349 -30.94634 -29.81968 -27.21722 -26.22882 -24.40921 -24.09914 -23.84114 -22.86067 -21.85548 -20.57736 -19.79689 -19.41751 -18.43967 -17.78322 -17.31063 -16.82856 -16.47162 -16.18179 -15.71555 -15.40369 -15.37429 -15.27574 -15.08885 -14.94569 -14.68279 -14.52369 -14.17208 -13.79536 -13.42433 -13.33205 -13.07642 -12.96289 -12.94561 -12.60895 -12.56833 -12.33160 -12.29198 -12.00203 -11.89771 -11.77865 -11.40725 -11.27953 -11.21263 -10.82570 -10.69508 -10.66133 -10.48690 -9.97060 -9.71053 -8.61655 -7.85890 -5.31785 -0.83276 0.14397 0.52188 1.33022 1.46967 1.48602 1.56985 1.88001 1.97547 2.52018 2.92651 3.12116 3.28630 3.59152 3.64453 3.78823 3.84401 3.93637 3.96879 4.06561 4.11515 4.36811 4.42668 4.52359 4.55647 4.60873 4.71069 4.84393 4.85543 4.92402 4.95038 5.00406 5.01715 5.07582 5.20072 5.21510 5.29066 5.29791 5.37333 5.42801 5.53966 5.66412 5.78112 6.27045 6.42017 6.53654 6.96748 7.17543 7.89497 8.40141 9.19185 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.002826 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.069275 B = 9906.897000 C =10696.390346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C 0.144 3.856 4 N -0.498 5.498 5 C 0.052 3.948 6 S 0.200 5.800 7 C -0.326 4.326 8 C 0.599 3.401 9 O -0.549 6.549 10 N -0.687 5.687 11 C 0.086 3.914 12 H 0.134 0.866 13 C -0.167 4.167 14 C -0.116 4.116 15 C -0.086 4.086 16 C 0.146 3.854 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.062 0.938 20 C -0.047 4.047 21 N -0.931 5.931 22 Si 0.963 3.037 23 H -0.285 1.285 24 H -0.271 1.271 25 H -0.295 1.295 26 C 0.181 3.819 27 C -0.091 4.091 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.247 0.753 34 H 0.405 0.595 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.052 0.948 41 H 0.250 0.750 42 H 0.055 0.945 43 H 0.000 1.000 44 H 0.068 0.932 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -10.584 -18.780 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 C 0.005 3.995 4 N -0.212 5.212 5 C -0.243 4.243 6 S 0.456 5.544 7 C -0.450 4.450 8 C 0.386 3.614 9 O -0.429 6.429 10 N -0.336 5.336 11 C -0.020 4.020 12 H 0.152 0.848 13 C -0.206 4.206 14 C -0.117 4.117 15 C -0.126 4.126 16 C 0.020 3.980 17 N -0.332 5.332 18 C -0.394 4.394 19 H 0.080 0.920 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.791 3.209 23 H -0.212 1.212 24 H -0.196 1.196 25 H -0.221 1.221 26 C 0.056 3.944 27 C -0.130 4.130 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.263 0.737 34 H 0.242 0.758 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.018 0.982 44 H 0.086 0.914 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.188 -10.451 -18.643 21.609 hybrid contribution -0.555 0.768 0.359 1.013 sum 2.633 -9.683 -18.284 20.857 Atomic orbital electron populations 1.21543 0.93427 1.02856 1.00997 1.20417 0.97073 0.88320 1.04276 1.20907 0.94723 0.98578 0.85272 1.66183 1.16813 1.07343 1.30887 1.29493 0.97948 0.95446 1.01372 1.84013 1.57222 1.09735 1.03440 1.25424 1.20209 1.01170 0.98208 1.16831 0.76913 0.84728 0.82950 1.90752 1.47352 1.19363 1.85395 1.45260 1.66583 1.16950 1.04780 1.21772 1.03665 0.98965 0.77593 0.84810 1.23639 0.92495 1.03157 1.01281 1.21836 0.99162 0.93123 0.97612 1.21531 0.97723 0.99205 0.94098 1.20985 0.98085 0.84171 0.94719 1.44225 1.46192 1.05117 1.37640 1.19494 0.98114 0.89149 1.32631 0.92012 1.25734 0.97282 1.00066 1.01203 1.70169 1.16422 1.15984 1.55095 0.85338 0.79022 0.78862 0.77661 1.21219 1.19586 1.22129 1.20427 0.90876 0.97159 0.85983 1.21478 1.00411 0.92920 0.98171 0.94297 0.92535 0.90419 0.89235 0.89120 0.73695 0.75825 0.88236 0.86737 0.89776 0.92770 0.96304 0.92947 0.94083 0.92632 0.98211 0.91403 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.89 71.98 0.71 -1.94 16 2 C -0.06 -1.32 5.74 29.85 0.17 -1.15 16 3 C 0.14 3.28 6.04 42.09 0.25 3.53 16 4 N -0.50 -9.97 10.50 -190.40 -2.00 -11.97 16 5 C 0.05 0.69 12.22 130.60 1.60 2.29 16 6 S 0.20 3.08 22.35 -56.49 -1.26 1.82 16 7 C -0.33 -7.46 6.48 23.88 0.15 -7.31 16 8 C 0.60 16.10 7.78 86.45 0.67 16.77 16 9 O -0.55 -17.24 13.84 -4.30 -0.06 -17.30 16 10 N -0.69 -17.19 5.34 -446.72 -2.39 -19.58 16 11 C 0.09 2.28 6.14 44.95 0.28 2.56 16 12 H 0.13 3.68 7.40 -2.39 -0.02 3.67 16 13 C -0.17 -4.30 9.87 30.56 0.30 -4.00 16 14 C -0.12 -3.55 1.94 -52.17 -0.10 -3.65 16 15 C -0.09 -2.80 5.83 30.77 0.18 -2.62 16 16 C 0.15 5.90 6.52 86.43 0.56 6.46 16 17 N -0.61 -29.98 2.94 -699.85 -2.06 -32.04 16 18 C -0.26 -14.38 9.54 84.03 0.80 -13.58 16 19 H 0.06 3.33 7.89 -2.91 -0.02 3.30 16 20 C -0.05 -2.60 4.89 84.86 0.41 -2.19 16 21 N -0.93 -54.00 11.23 21.65 0.24 -53.76 16 22 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 C 0.18 8.40 5.37 86.27 0.46 8.86 16 27 C -0.09 -3.19 5.36 30.61 0.16 -3.03 16 28 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 2.23 6.02 -2.39 -0.01 2.22 16 33 H 0.25 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.40 9.07 6.30 -92.71 -0.58 8.49 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 38 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 2.10 7.92 -2.39 -0.02 2.08 16 41 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.06 2.94 5.94 -2.39 -0.01 2.93 16 43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.07 2.01 6.75 -2.38 -0.02 1.99 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -67.94 374.82 1.55 -66.39 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.42 Total: 19.03 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.62 Total: 1.00 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -6.20 Total: -117.35 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.06 Total: -17.30 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.26 Total: 1.82 kcal Total: -67.94 1.55 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016654695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.912 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds