Wall clock time and date at job start Tue Mar 31 2020 18:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47026 * 2 1 4 4 N 1.29432 * 124.81030 * 89.94496 * 3 2 1 5 5 C 1.30930 * 117.36868 * 180.02562 * 4 3 2 6 6 C 1.35660 * 114.19381 * 0.02562 * 5 4 3 7 7 C 1.46685 * 126.13576 * 180.02562 * 6 5 4 8 8 O 1.21689 * 119.99766 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00257 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99997 * 179.97438 * 9 7 6 11 11 H 1.09000 * 115.55292 * 350.70264 * 10 9 7 12 12 C 1.53023 * 117.50085 * 136.39465 * 10 9 7 13 13 C 1.52816 * 117.50072 * 204.97705 * 10 9 7 14 14 C 1.53187 * 117.71506 * 144.90111 * 13 10 9 15 15 C 1.53343 * 108.76825 * 158.88844 * 14 13 10 16 16 N 1.46835 * 108.82004 * 51.30825 * 15 14 13 17 17 C 1.36936 * 120.38807 * 123.11867 * 16 15 14 18 18 H 1.07999 * 120.00356 * 208.88238 * 17 16 15 19 19 C 1.38820 * 119.99487 * 28.88144 * 17 16 15 20 20 N 1.31614 * 120.00392 * 17.86168 * 19 17 16 21 21 Si 1.86807 * 119.99525 * 197.86161 * 19 17 16 22 22 H 1.48493 * 109.47125 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47009 * 120.00053 * 21 19 17 24 24 H 1.48496 * 109.47022 * 239.99812 * 21 19 17 25 25 C 1.46850 * 119.22865 * 303.09520 * 16 15 14 26 26 C 1.53189 * 117.71302 * 0.13787 * 13 10 9 27 27 S 1.70958 * 124.80376 * 269.99948 * 3 2 1 28 28 H 1.09006 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47543 * 299.99887 * 1 2 3 30 30 H 1.09005 * 109.47316 * 60.00524 * 1 2 3 31 31 H 1.08996 * 109.47606 * 239.99637 * 2 1 3 32 32 H 1.09001 * 109.46898 * 119.99198 * 2 1 3 33 33 H 1.08004 * 122.90938 * 179.97438 * 5 4 3 34 34 H 0.96998 * 120.00103 * 0.02562 * 9 7 6 35 35 H 1.09004 * 117.50488 * 214.95669 * 12 10 9 36 36 H 1.09005 * 117.50849 * 359.97137 * 12 10 9 37 37 H 1.09004 * 109.58335 * 278.67245 * 14 13 10 38 38 H 1.08999 * 109.58668 * 39.10114 * 14 13 10 39 39 H 1.09004 * 109.58233 * 291.50243 * 15 14 13 40 40 H 1.09010 * 109.57712 * 171.10760 * 15 14 13 41 41 H 0.96995 * 120.00112 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.58373 * 297.10504 * 25 16 15 43 43 H 1.09003 * 109.57355 * 176.70630 * 25 16 15 44 44 H 1.08998 * 109.58977 * 320.90140 * 26 13 10 45 45 H 1.08991 * 109.58876 * 81.33713 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2776 2.1178 1.0627 5 6 2.7100 3.3419 0.8931 6 6 2.8405 3.7105 -0.4059 7 6 3.3020 5.0150 -0.8927 8 8 3.6094 5.8860 -0.1005 9 7 3.3854 5.2489 -2.2174 10 6 3.8457 6.5520 -2.7036 11 1 3.9503 7.3270 -1.9443 12 6 4.8425 6.5611 -3.8646 13 6 3.3927 6.9854 -4.0972 14 6 3.1154 8.4747 -4.3251 15 6 3.2002 8.7679 -5.8279 16 7 2.3498 7.8103 -6.5461 17 6 1.3479 8.2538 -7.3674 18 1 0.4665 7.6485 -7.5195 19 6 1.4651 9.4816 -8.0045 20 7 2.6442 10.0558 -8.1149 21 14 -0.0508 10.3187 -8.7051 22 1 -1.2449 9.4733 -8.4514 23 1 -0.2327 11.6401 -8.0524 24 1 0.1202 10.5086 -10.1679 25 6 2.5866 6.3713 -6.3737 26 6 2.4892 6.0292 -4.8821 27 16 2.3575 2.3408 -1.4038 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.9419 4.0016 1.7162 34 1 3.1400 4.5548 -2.8489 35 1 5.6026 7.3424 -3.8694 36 1 5.1562 5.5976 -4.2665 37 1 2.1181 8.7206 -3.9604 38 1 3.8581 9.0701 -3.7941 39 1 4.2321 8.6631 -6.1630 40 1 2.8523 9.7826 -6.0222 41 1 2.7262 10.9135 -8.5604 42 1 3.5805 6.1179 -6.7425 43 1 1.8350 5.8086 -6.9274 44 1 2.8163 5.0021 -4.7206 45 1 1.4582 6.1435 -4.5476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016994676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:59 Heat of formation + Delta-G solvation = 47.641661 kcal Electronic energy + Delta-G solvation = -26038.872973 eV Core-core repulsion = 22377.238007 eV Total energy + Delta-G solvation = -3661.634966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49962 -39.70205 -38.33648 -35.54248 -34.46340 -33.27707 -31.67356 -30.27963 -29.90230 -28.29764 -26.48399 -24.38125 -23.68601 -22.77574 -22.51215 -21.37812 -20.61346 -19.84422 -18.70907 -18.25428 -17.19231 -16.42378 -16.28717 -15.56682 -15.33484 -14.91523 -14.79966 -14.59713 -14.23037 -14.11177 -13.89223 -13.56510 -13.40459 -13.16343 -12.81982 -12.71555 -12.30334 -12.22709 -11.92933 -11.70411 -11.67879 -11.64015 -11.37844 -11.02315 -10.76100 -10.47938 -10.40728 -10.35423 -10.06117 -9.98001 -9.87193 -9.71659 -9.67503 -9.41327 -9.29608 -8.55562 -8.47324 -6.66704 -5.80957 -3.24197 -0.10946 0.78235 1.20275 2.13829 2.87155 2.94353 3.35671 3.44095 3.46010 3.62306 4.12427 4.40410 4.47886 4.53974 4.67672 4.69854 4.90007 4.94100 5.07368 5.08172 5.11528 5.32007 5.37277 5.42698 5.44417 5.60023 5.66417 5.75897 5.78709 5.99162 6.02934 6.03123 6.24981 6.39082 6.44558 6.57956 6.60798 6.66117 6.79247 6.92739 7.19661 7.31860 7.34680 7.65047 7.78150 7.95729 8.44392 9.19732 9.83207 10.39649 11.26816 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.002474 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.949940 B =11313.009269 C =12206.432121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.062 3.938 4 N -0.478 5.478 5 C 0.121 3.879 6 C -0.291 4.291 7 C 0.598 3.402 8 O -0.527 6.527 9 N -0.688 5.688 10 C 0.067 3.933 11 H 0.136 0.864 12 C -0.180 4.180 13 C -0.094 4.094 14 C -0.106 4.106 15 C 0.173 3.827 16 N -0.589 5.589 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.150 3.850 26 C -0.099 4.099 27 S 0.167 5.833 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.189 0.811 34 H 0.398 0.602 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.091 0.909 41 H 0.253 0.747 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 -19.196 14.670 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.213 4.213 4 N -0.192 5.192 5 C -0.037 4.037 6 C -0.415 4.415 7 C 0.383 3.617 8 O -0.405 6.405 9 N -0.337 5.337 10 C -0.038 4.038 11 H 0.153 0.847 12 C -0.219 4.219 13 C -0.096 4.096 14 C -0.145 4.145 15 C 0.047 3.953 16 N -0.311 5.311 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.024 3.976 26 C -0.138 4.138 27 S 0.424 5.576 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.206 0.794 34 H 0.234 0.766 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.443 -18.887 14.539 23.839 hybrid contribution -0.512 0.730 0.042 0.892 sum -0.069 -18.157 14.580 23.287 Atomic orbital electron populations 1.21797 0.92993 1.02953 1.03000 1.20333 0.97101 0.87049 1.04741 1.27567 1.00719 1.01993 0.91025 1.66221 1.15663 1.06130 1.31147 1.22196 0.94749 0.91215 0.95525 1.25791 1.17364 1.00414 0.97922 1.16653 0.77603 0.84881 0.82554 1.90836 1.49658 1.44832 1.55137 1.45298 1.66603 1.15875 1.05936 1.21981 1.03668 0.86056 0.92141 0.84657 1.23549 0.93869 1.03034 1.01407 1.21986 0.95260 0.98088 0.94226 1.21893 1.00593 0.90503 1.01531 1.20772 0.93336 0.96003 0.85210 1.43982 1.37544 0.99012 1.50605 1.19220 0.95525 1.03081 1.20484 0.91753 1.25051 0.96254 1.00127 0.98157 1.70036 1.21077 1.17877 1.45485 0.86260 0.82849 0.79537 0.78347 1.20254 1.21529 1.21738 1.20831 0.98106 0.87229 0.91479 1.21651 0.98427 0.94961 0.98783 1.83981 1.57968 1.04214 1.11473 0.91024 0.91764 0.92108 0.89208 0.88334 0.79399 0.76610 0.88052 0.88992 0.92032 0.92894 0.96302 0.89103 0.93653 0.96262 0.92680 0.93797 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.37 16 2 C -0.05 -0.28 6.51 -27.89 -0.18 -0.46 16 3 C 0.06 0.53 6.64 -13.29 -0.09 0.45 16 4 N -0.48 -5.13 10.51 -11.50 -0.12 -5.25 16 5 C 0.12 1.36 11.09 -18.86 -0.21 1.15 16 6 C -0.29 -3.38 6.48 -37.09 -0.24 -3.62 16 7 C 0.60 8.38 7.79 -12.85 -0.10 8.28 16 8 O -0.53 -8.99 16.43 5.20 0.09 -8.90 16 9 N -0.69 -9.01 5.34 -55.19 -0.29 -9.30 16 10 C 0.07 0.97 6.14 -68.01 -0.42 0.55 16 11 H 0.14 2.11 7.40 -51.93 -0.38 1.73 16 12 C -0.18 -2.56 9.86 -26.80 -0.26 -2.82 16 13 C -0.09 -1.53 1.94 -154.49 -0.30 -1.83 16 14 C -0.11 -1.98 5.83 -26.46 -0.15 -2.13 16 15 C 0.17 4.01 5.40 -3.68 -0.02 3.99 16 16 N -0.59 -14.33 2.94 -172.25 -0.51 -14.84 16 17 C -0.25 -6.81 9.54 -15.06 -0.14 -6.96 16 18 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 19 C 0.00 0.08 4.88 -17.43 -0.09 -0.01 16 20 N -0.90 -25.76 11.23 55.49 0.62 -25.13 16 21 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.15 3.01 6.52 -3.67 -0.02 2.98 16 26 C -0.10 -1.61 5.37 -26.45 -0.14 -1.75 16 27 S 0.17 1.44 22.31 -107.50 -2.40 -0.96 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.19 1.95 8.06 -52.48 -0.42 1.53 16 34 H 0.40 4.52 6.30 -40.82 -0.26 4.26 16 35 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 2.38 5.93 -51.92 -0.31 2.07 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 44 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -31.49 379.78 -10.67 -42.16 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.75 Total: 2.67 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.00 Total: -2.55 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.30 Total: -54.53 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.40 Total: -0.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.49 -10.67 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016994676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.803 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds