Wall clock time and date at job start Tue Mar 31 2020 18:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47026 * 2 1 4 4 N 1.29432 * 124.81030 * 89.94496 * 3 2 1 5 5 C 1.30930 * 117.36868 * 180.02562 * 4 3 2 6 6 C 1.35660 * 114.19381 * 0.02562 * 5 4 3 7 7 C 1.46685 * 126.13576 * 180.02562 * 6 5 4 8 8 O 1.21689 * 119.99766 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00257 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99997 * 179.97438 * 9 7 6 11 11 H 1.09000 * 115.55292 * 350.70264 * 10 9 7 12 12 C 1.53023 * 117.50085 * 136.39465 * 10 9 7 13 13 C 1.52816 * 117.50072 * 204.97705 * 10 9 7 14 14 C 1.53187 * 117.71506 * 144.90111 * 13 10 9 15 15 C 1.53343 * 108.76825 * 158.88844 * 14 13 10 16 16 N 1.46835 * 108.82004 * 51.30825 * 15 14 13 17 17 C 1.36936 * 120.38807 * 123.11867 * 16 15 14 18 18 H 1.07999 * 120.00356 * 208.88238 * 17 16 15 19 19 C 1.38820 * 119.99487 * 28.88144 * 17 16 15 20 20 N 1.31614 * 120.00392 * 17.86168 * 19 17 16 21 21 Si 1.86807 * 119.99525 * 197.86161 * 19 17 16 22 22 H 1.48493 * 109.47125 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47009 * 120.00053 * 21 19 17 24 24 H 1.48496 * 109.47022 * 239.99812 * 21 19 17 25 25 C 1.46850 * 119.22865 * 303.09520 * 16 15 14 26 26 C 1.53189 * 117.71302 * 0.13787 * 13 10 9 27 27 S 1.70958 * 124.80376 * 269.99948 * 3 2 1 28 28 H 1.09006 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47543 * 299.99887 * 1 2 3 30 30 H 1.09005 * 109.47316 * 60.00524 * 1 2 3 31 31 H 1.08996 * 109.47606 * 239.99637 * 2 1 3 32 32 H 1.09001 * 109.46898 * 119.99198 * 2 1 3 33 33 H 1.08004 * 122.90938 * 179.97438 * 5 4 3 34 34 H 0.96998 * 120.00103 * 0.02562 * 9 7 6 35 35 H 1.09004 * 117.50488 * 214.95669 * 12 10 9 36 36 H 1.09005 * 117.50849 * 359.97137 * 12 10 9 37 37 H 1.09004 * 109.58335 * 278.67245 * 14 13 10 38 38 H 1.08999 * 109.58668 * 39.10114 * 14 13 10 39 39 H 1.09004 * 109.58233 * 291.50243 * 15 14 13 40 40 H 1.09010 * 109.57712 * 171.10760 * 15 14 13 41 41 H 0.96995 * 120.00112 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.58373 * 297.10504 * 25 16 15 43 43 H 1.09003 * 109.57355 * 176.70630 * 25 16 15 44 44 H 1.08998 * 109.58977 * 320.90140 * 26 13 10 45 45 H 1.08991 * 109.58876 * 81.33713 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2776 2.1178 1.0627 5 6 2.7100 3.3419 0.8931 6 6 2.8405 3.7105 -0.4059 7 6 3.3020 5.0150 -0.8927 8 8 3.6094 5.8860 -0.1005 9 7 3.3854 5.2489 -2.2174 10 6 3.8457 6.5520 -2.7036 11 1 3.9503 7.3270 -1.9443 12 6 4.8425 6.5611 -3.8646 13 6 3.3927 6.9854 -4.0972 14 6 3.1154 8.4747 -4.3251 15 6 3.2002 8.7679 -5.8279 16 7 2.3498 7.8103 -6.5461 17 6 1.3479 8.2538 -7.3674 18 1 0.4665 7.6485 -7.5195 19 6 1.4651 9.4816 -8.0045 20 7 2.6442 10.0558 -8.1149 21 14 -0.0508 10.3187 -8.7051 22 1 -1.2449 9.4733 -8.4514 23 1 -0.2327 11.6401 -8.0524 24 1 0.1202 10.5086 -10.1679 25 6 2.5866 6.3713 -6.3737 26 6 2.4892 6.0292 -4.8821 27 16 2.3575 2.3408 -1.4038 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.9419 4.0016 1.7162 34 1 3.1400 4.5548 -2.8489 35 1 5.6026 7.3424 -3.8694 36 1 5.1562 5.5976 -4.2665 37 1 2.1181 8.7206 -3.9604 38 1 3.8581 9.0701 -3.7941 39 1 4.2321 8.6631 -6.1630 40 1 2.8523 9.7826 -6.0222 41 1 2.7262 10.9135 -8.5604 42 1 3.5805 6.1179 -6.7425 43 1 1.8350 5.8086 -6.9274 44 1 2.8163 5.0021 -4.7206 45 1 1.4582 6.1435 -4.5476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016994676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:58 Heat of formation + Delta-G solvation = 28.619219 kcal Electronic energy + Delta-G solvation = -26039.697848 eV Core-core repulsion = 22377.238007 eV Total energy + Delta-G solvation = -3662.459841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46879 -40.71965 -39.60283 -37.16283 -35.01249 -34.60571 -33.41622 -31.71856 -30.94431 -29.88766 -27.17760 -26.24154 -24.50386 -24.06499 -23.52110 -22.84862 -21.94381 -20.76373 -19.80970 -19.48726 -18.46802 -17.84363 -17.39490 -16.81269 -16.46233 -16.19696 -15.74977 -15.56258 -15.48268 -15.28724 -15.01521 -14.91038 -14.76854 -14.50451 -14.19179 -13.84473 -13.34533 -13.25826 -13.11848 -12.91500 -12.73466 -12.62649 -12.59370 -12.56910 -12.25300 -12.07179 -12.02102 -11.79487 -11.49143 -11.41643 -11.26144 -10.85629 -10.73043 -10.64103 -10.48443 -10.04567 -9.75678 -8.62314 -7.85966 -5.31794 -0.89174 0.05790 0.45542 1.27865 1.45518 1.48425 1.58083 1.81872 1.97205 2.51723 2.90155 2.99212 3.29056 3.57767 3.63165 3.76706 3.82665 3.84124 3.95066 4.10362 4.13204 4.25960 4.28995 4.51096 4.57183 4.66826 4.72075 4.82672 4.84922 4.91198 4.95057 4.99912 5.02557 5.06470 5.07490 5.13685 5.28936 5.33744 5.36004 5.37415 5.54720 5.66570 5.77852 6.23391 6.41856 6.50845 6.91686 7.17028 7.89414 8.40085 9.19286 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.002474 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.949940 B =11313.009269 C =12206.432121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C 0.067 3.933 4 N -0.501 5.501 5 C 0.121 3.879 6 C -0.322 4.322 7 C 0.600 3.400 8 O -0.565 6.565 9 N -0.681 5.681 10 C 0.081 3.919 11 H 0.125 0.875 12 C -0.165 4.165 13 C -0.112 4.112 14 C -0.094 4.094 15 C 0.181 3.819 16 N -0.608 5.608 17 C -0.260 4.260 18 H 0.065 0.935 19 C -0.050 4.050 20 N -0.933 5.933 21 Si 0.962 3.038 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.146 3.854 26 C -0.085 4.085 27 S 0.216 5.784 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.187 0.813 34 H 0.409 0.591 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.001 0.999 40 H 0.053 0.947 41 H 0.249 0.751 42 H 0.020 0.980 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 -22.129 15.082 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.207 4.207 4 N -0.216 5.216 5 C -0.038 4.038 6 C -0.446 4.446 7 C 0.387 3.613 8 O -0.446 6.446 9 N -0.330 5.330 10 C -0.025 4.025 11 H 0.143 0.857 12 C -0.204 4.204 13 C -0.114 4.114 14 C -0.134 4.134 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.246 4.246 20 N -0.579 5.579 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.020 3.980 26 C -0.124 4.124 27 S 0.474 5.526 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.204 0.796 34 H 0.246 0.754 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.019 0.981 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.070 -21.876 14.939 26.490 hybrid contribution -0.367 1.516 -0.075 1.562 sum -0.437 -20.360 14.863 25.212 Atomic orbital electron populations 1.21805 0.92507 1.04072 1.02233 1.20578 0.97343 0.85157 1.06358 1.28243 0.98721 1.02994 0.90771 1.66292 1.16998 1.06102 1.32190 1.22287 0.94232 0.91587 0.95653 1.25586 1.19418 1.00731 0.98861 1.16917 0.76768 0.85339 0.82321 1.90812 1.51399 1.46368 1.56002 1.45181 1.66358 1.15466 1.05988 1.21734 1.03073 0.86544 0.91104 0.85698 1.23643 0.92642 1.03945 1.00137 1.21831 0.97240 0.96243 0.96081 1.21642 1.00447 0.93161 0.98102 1.20530 0.91831 0.94171 0.88003 1.44242 1.37276 1.01021 1.50598 1.19530 0.96234 1.03236 1.20066 0.91697 1.25765 0.98626 1.00942 0.99241 1.70176 1.22883 1.18007 1.46824 0.85286 0.80136 0.78271 0.77240 1.19103 1.21905 1.21909 1.20993 0.98020 0.84728 0.94213 1.21478 0.98281 0.96997 0.95681 1.83720 1.56785 1.02019 1.10054 0.89022 0.93227 0.92177 0.86668 0.87646 0.79632 0.75395 0.87654 0.87066 0.93324 0.91347 0.98067 0.92814 0.94152 0.96248 0.92545 0.89954 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 71.98 0.71 -0.35 16 2 C -0.05 -0.41 6.51 29.85 0.19 -0.22 16 3 C 0.07 0.99 6.64 88.46 0.59 1.58 16 4 N -0.50 -10.07 10.51 -190.30 -2.00 -12.07 16 5 C 0.12 2.65 11.09 84.23 0.93 3.58 16 6 C -0.32 -7.03 6.48 23.88 0.15 -6.87 16 7 C 0.60 16.14 7.79 86.45 0.67 16.81 16 8 O -0.57 -19.22 16.43 -4.31 -0.07 -19.29 16 9 N -0.68 -16.33 5.34 -446.75 -2.39 -18.71 16 10 C 0.08 2.22 6.14 44.94 0.28 2.49 16 11 H 0.13 3.77 7.40 -2.39 -0.02 3.76 16 12 C -0.17 -4.29 9.86 30.55 0.30 -3.99 16 13 C -0.11 -3.47 1.94 -52.17 -0.10 -3.57 16 14 C -0.09 -3.53 5.83 30.77 0.18 -3.35 16 15 C 0.18 8.59 5.40 86.43 0.47 9.05 16 16 N -0.61 -29.84 2.94 -698.89 -2.05 -31.89 16 17 C -0.26 -14.14 9.54 84.04 0.80 -13.33 16 18 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 19 C -0.05 -2.79 4.88 84.86 0.41 -2.38 16 20 N -0.93 -54.95 11.23 21.65 0.24 -54.70 16 21 Si 0.96 44.72 29.59 68.60 2.03 46.75 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 C 0.15 5.67 6.52 86.43 0.56 6.24 16 26 C -0.09 -2.59 5.37 30.77 0.17 -2.42 16 27 S 0.22 3.11 22.31 -56.49 -1.26 1.85 16 28 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.19 3.92 8.06 -2.91 -0.02 3.89 16 34 H 0.41 7.94 6.30 -92.71 -0.58 7.35 16 35 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 36 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.07 2.30 8.10 -2.39 -0.02 2.28 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.05 2.94 5.93 -2.38 -0.01 2.93 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 2.14 7.92 -2.39 -0.02 2.12 16 44 H 0.08 1.86 6.75 -2.39 -0.02 1.85 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -69.91 379.78 1.25 -68.66 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.42 Total: 16.13 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 6.32 Total: 3.27 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.20 Total: -117.37 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.07 Total: -19.29 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.26 Total: 1.85 kcal Total: -69.91 1.25 -68.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016994676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.282 kcal (2) G-P(sol) polarization free energy of solvation -69.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds