Wall clock time and date at job start Tue Mar 31 2020 18:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 C 1.50705 * 109.46950 * 119.99957 * 2 1 3 5 5 N 1.30939 * 122.90455 * 305.09265 * 4 2 1 6 6 C 1.29432 * 117.36354 * 180.30415 * 5 4 2 7 7 S 1.70951 * 110.39084 * 359.73430 * 6 5 4 8 8 C 1.35662 * 122.90721 * 124.90083 * 4 2 1 9 9 C 1.46690 * 126.12399 * 0.02562 * 8 4 2 10 10 O 1.21691 * 119.99714 * 85.51135 * 9 8 4 11 11 N 1.34768 * 120.00070 * 265.50487 * 9 8 4 12 12 C 1.47167 * 120.71261 * 185.01585 * 11 9 8 13 13 C 1.53886 * 108.03184 * 132.73614 * 12 11 9 14 14 H 1.09003 * 112.09384 * 181.90942 * 13 12 11 15 15 C 1.54548 * 108.37140 * 306.25073 * 13 12 11 16 16 C 1.54829 * 104.74040 * 89.17040 * 15 13 12 17 17 C 1.54547 * 104.74475 * 0.02562 * 16 15 13 18 18 H 1.09001 * 112.68372 * 146.80906 * 17 16 15 19 19 C 1.47164 * 120.70985 * 4.99639 * 11 9 8 20 20 N 1.48309 * 104.36251 * 24.81824 * 17 16 15 21 21 C 1.36932 * 128.07866 * 139.08027 * 20 17 16 22 22 H 1.08003 * 119.99701 * 344.96505 * 21 20 17 23 23 C 1.38808 * 120.00025 * 164.95562 * 21 20 17 24 24 N 1.31622 * 119.99951 * 351.85257 * 23 21 20 25 25 Si 1.86802 * 120.00128 * 171.85192 * 23 21 20 26 26 H 1.48497 * 109.47148 * 270.00587 * 25 23 21 27 27 H 1.48507 * 109.46668 * 30.00329 * 25 23 21 28 28 H 1.48500 * 109.47063 * 150.00118 * 25 23 21 29 29 H 1.09005 * 109.46984 * 300.00256 * 1 2 3 30 30 H 1.08994 * 109.46863 * 60.00155 * 1 2 3 31 31 H 1.08999 * 109.47191 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47206 * 239.99769 * 2 1 3 33 33 H 1.08996 * 109.47167 * 59.99745 * 3 2 1 34 34 H 1.09004 * 109.47521 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47228 * 299.99887 * 3 2 1 36 36 H 1.08003 * 124.80041 * 179.69746 * 6 5 4 37 37 H 1.09000 * 109.74293 * 13.10808 * 12 11 9 38 38 H 1.08997 * 109.79171 * 252.39420 * 12 11 9 39 39 H 1.08995 * 110.36131 * 208.13967 * 15 13 12 40 40 H 1.08999 * 110.36194 * 330.45596 * 15 13 12 41 41 H 1.08992 * 110.31378 * 241.24515 * 16 15 13 42 42 H 1.09010 * 110.61070 * 118.91185 * 16 15 13 43 43 H 1.09001 * 109.74950 * 346.89298 * 19 11 9 44 44 H 1.08996 * 109.75306 * 107.58104 * 19 11 9 45 45 H 0.97007 * 120.00080 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.6736 -0.3721 2.4435 6 6 2.1754 -1.0521 3.4238 7 16 3.2165 -2.2717 2.8313 8 6 2.8924 -1.7582 1.1772 9 6 3.4567 -2.3527 -0.0393 10 8 4.4617 -1.8806 -0.5375 11 7 2.8624 -3.4217 -0.6052 12 6 3.4741 -4.0979 -1.7604 13 6 3.4548 -5.6128 -1.4908 14 1 3.9251 -6.1784 -2.2951 15 6 4.1274 -5.8729 -0.1239 16 6 2.9751 -5.7801 0.9062 17 6 1.7171 -5.4735 0.0625 18 1 0.8138 -5.9215 0.4767 19 6 1.5880 -3.9382 -0.0809 20 7 2.0390 -6.0043 -1.2844 21 6 1.2190 -6.6903 -2.1400 22 1 0.2940 -7.1141 -1.7778 23 6 1.5765 -6.8408 -3.4727 24 7 2.6170 -6.1928 -3.9522 25 14 0.5810 -7.9631 -4.5859 26 1 1.1452 -9.3358 -4.5371 27 1 -0.8306 -7.9914 -4.1254 28 1 0.6369 -7.4540 -5.9798 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.9664 -0.8737 4.4683 37 1 4.5027 -3.7588 -1.8833 38 1 2.9031 -3.8770 -2.6622 39 1 4.5774 -6.8654 -0.1054 40 1 4.8793 -5.1106 0.0800 41 1 3.1640 -4.9726 1.6134 42 1 2.8558 -6.7260 1.4347 43 1 1.3840 -3.4948 0.8938 44 1 0.7804 -3.6965 -0.7718 45 1 2.8671 -6.2983 -4.8835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029507710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:47 Heat of formation + Delta-G solvation = 43.179575 kcal Electronic energy + Delta-G solvation = -28452.956099 eV Core-core repulsion = 24791.127642 eV Total energy + Delta-G solvation = -3661.828456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57608 -39.54937 -37.70316 -34.89975 -33.83293 -32.42441 -31.01890 -30.00483 -29.25643 -27.11966 -26.53111 -25.53728 -23.95566 -23.72251 -22.43034 -21.08615 -19.76565 -19.17517 -18.37164 -17.83654 -17.15333 -16.42930 -15.71581 -15.35571 -14.93474 -14.62284 -14.45670 -14.27822 -14.07318 -13.80815 -13.49442 -13.11815 -12.93529 -12.88185 -12.81631 -12.32236 -12.12022 -11.90117 -11.76161 -11.64428 -11.17633 -11.11580 -10.95728 -10.91527 -10.89743 -10.87237 -10.42858 -10.12062 -9.97171 -9.95183 -9.73527 -9.63720 -9.58388 -9.27054 -8.85160 -8.84323 -8.17286 -6.91010 -5.88711 -3.25240 0.47863 1.08373 1.57948 2.65718 3.03941 3.32827 3.38591 3.40474 3.53317 4.07871 4.36897 4.71854 4.88774 4.91476 5.11559 5.17153 5.26692 5.32239 5.40662 5.53216 5.60734 5.67366 5.68739 5.76143 5.83556 5.86090 5.87243 5.95608 6.09573 6.14697 6.25101 6.26028 6.31101 6.34673 6.46044 6.56622 6.60549 6.72267 6.79782 6.88329 7.21565 7.43782 7.59074 7.63596 7.90640 8.08292 8.48357 9.00252 9.62292 10.37841 11.23753 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.004198 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.488601 B = 6667.958271 C = 7254.927844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.023 4.023 3 C -0.138 4.138 4 C 0.110 3.890 5 N -0.459 5.459 6 C 0.008 3.992 7 S 0.175 5.825 8 C -0.254 4.254 9 C 0.583 3.417 10 O -0.540 6.540 11 N -0.574 5.574 12 C 0.112 3.888 13 C 0.167 3.833 14 H 0.123 0.877 15 C -0.137 4.137 16 C -0.123 4.123 17 C 0.135 3.865 18 H 0.079 0.921 19 C 0.096 3.904 20 N -0.583 5.583 21 C -0.228 4.228 22 H 0.077 0.923 23 C -0.001 4.001 24 N -0.913 5.913 25 Si 0.913 3.087 26 H -0.288 1.288 27 H -0.281 1.281 28 H -0.291 1.291 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.202 0.798 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 8.701 13.266 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.044 4.044 3 C -0.196 4.196 4 C -0.026 4.026 5 N -0.173 5.173 6 C -0.288 4.288 7 S 0.430 5.570 8 C -0.379 4.379 9 C 0.366 3.634 10 O -0.419 6.419 11 N -0.305 5.305 12 C -0.010 4.010 13 C 0.059 3.941 14 H 0.141 0.859 15 C -0.176 4.176 16 C -0.162 4.162 17 C 0.026 3.974 18 H 0.097 0.903 19 C -0.030 4.030 20 N -0.303 5.303 21 C -0.356 4.356 22 H 0.095 0.905 23 C -0.199 4.199 24 N -0.559 5.559 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.207 1.207 28 H -0.217 1.217 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.218 0.782 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.452 8.472 13.376 15.839 hybrid contribution -0.858 -0.063 -1.110 1.404 sum -1.310 8.409 12.266 14.929 Atomic orbital electron populations 1.21759 0.93379 1.02224 1.02238 1.19804 0.96560 0.96018 0.92050 1.21752 1.01260 0.94428 1.02134 1.20411 0.95104 0.93750 0.93291 1.65881 1.24695 1.28215 0.98465 1.28559 0.99473 0.97397 1.03333 1.84055 1.43478 1.32727 0.96788 1.25596 1.08577 1.05007 0.98696 1.16828 0.83789 0.80526 0.82239 1.90806 1.25586 1.61576 1.63957 1.48203 1.22837 1.27623 1.31846 1.22578 0.97507 0.94396 0.86528 1.21944 0.85733 0.91527 0.94874 0.85939 1.22732 0.96942 1.00147 0.97760 1.22567 0.96465 0.99899 0.97274 1.22117 0.96290 0.90214 0.88780 0.90270 1.22729 0.85113 0.97524 0.97606 1.45193 1.08079 1.63200 1.13876 1.19004 1.02130 1.25715 0.88712 0.90502 1.24834 0.98707 1.00001 0.96326 1.69812 1.28107 1.43648 1.14376 0.86116 0.79339 0.80222 0.80010 1.21552 1.20662 1.21683 0.91749 0.92081 0.92591 0.89780 0.91977 0.92564 0.92004 0.78173 0.91175 0.89830 0.92510 0.93035 0.93127 0.92345 0.92180 0.91310 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.09 37.16 0.34 -1.34 16 2 C -0.02 -0.32 3.20 -91.77 -0.29 -0.62 16 3 C -0.14 -1.70 9.17 37.15 0.34 -1.36 16 4 C 0.11 1.61 5.38 -83.89 -0.45 1.16 16 5 N -0.46 -6.05 10.31 -11.53 -0.12 -6.17 16 6 C 0.01 0.09 12.22 51.75 0.63 0.72 16 7 S 0.17 2.09 22.98 -107.50 -2.47 -0.38 16 8 C -0.25 -3.99 4.23 -37.09 -0.16 -4.14 16 9 C 0.58 10.94 6.44 -12.85 -0.08 10.86 16 10 O -0.54 -11.80 16.61 5.20 0.09 -11.71 16 11 N -0.57 -10.93 2.28 -172.53 -0.39 -11.32 16 12 C 0.11 2.42 5.81 -3.22 -0.02 2.40 16 13 C 0.17 3.67 3.10 -65.65 -0.20 3.47 16 14 H 0.12 3.07 6.30 -51.93 -0.33 2.74 16 15 C -0.14 -2.57 6.23 -24.95 -0.16 -2.72 16 16 C -0.12 -2.08 6.24 -24.95 -0.16 -2.24 16 17 C 0.13 2.52 4.32 -65.21 -0.28 2.24 16 18 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 19 C 0.10 1.69 5.88 -2.77 -0.02 1.68 16 20 N -0.58 -13.33 2.80 -152.08 -0.43 -13.75 16 21 C -0.23 -5.77 10.38 -15.06 -0.16 -5.93 16 22 H 0.08 1.90 7.84 -52.48 -0.41 1.49 16 23 C 0.00 -0.04 5.43 -17.43 -0.09 -0.13 16 24 N -0.91 -24.49 10.35 55.49 0.57 -23.91 16 25 Si 0.91 20.82 29.56 -169.99 -5.03 15.79 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.33 7.11 -51.93 -0.37 0.96 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.20 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.07 1.52 7.16 -51.93 -0.37 1.15 16 38 H 0.08 2.04 7.83 -51.93 -0.41 1.63 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 41 H 0.05 0.78 7.70 -51.93 -0.40 0.38 16 42 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 43 H 0.06 0.94 6.38 -51.93 -0.33 0.60 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -29.06 369.24 -9.77 -38.83 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.81 Total: 3.00 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.76 Total: 4.06 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.36 Total: -55.15 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.47 Total: -0.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.06 -9.77 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029507710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.010 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds