Wall clock time and date at job start Tue Mar 31 2020 18:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 C 1.50705 * 109.46950 * 119.99957 * 2 1 3 5 5 N 1.30939 * 122.90455 * 305.09265 * 4 2 1 6 6 C 1.29432 * 117.36354 * 180.30415 * 5 4 2 7 7 S 1.70951 * 110.39084 * 359.73430 * 6 5 4 8 8 C 1.35662 * 122.90721 * 124.90083 * 4 2 1 9 9 C 1.46690 * 126.12399 * 0.02562 * 8 4 2 10 10 O 1.21691 * 119.99714 * 85.51135 * 9 8 4 11 11 N 1.34768 * 120.00070 * 265.50487 * 9 8 4 12 12 C 1.47167 * 120.71261 * 185.01585 * 11 9 8 13 13 C 1.53886 * 108.03184 * 132.73614 * 12 11 9 14 14 H 1.09003 * 112.09384 * 181.90942 * 13 12 11 15 15 C 1.54548 * 108.37140 * 306.25073 * 13 12 11 16 16 C 1.54829 * 104.74040 * 89.17040 * 15 13 12 17 17 C 1.54547 * 104.74475 * 0.02562 * 16 15 13 18 18 H 1.09001 * 112.68372 * 146.80906 * 17 16 15 19 19 C 1.47164 * 120.70985 * 4.99639 * 11 9 8 20 20 N 1.48309 * 104.36251 * 24.81824 * 17 16 15 21 21 C 1.36932 * 128.07866 * 139.08027 * 20 17 16 22 22 H 1.08003 * 119.99701 * 344.96505 * 21 20 17 23 23 C 1.38808 * 120.00025 * 164.95562 * 21 20 17 24 24 N 1.31622 * 119.99951 * 351.85257 * 23 21 20 25 25 Si 1.86802 * 120.00128 * 171.85192 * 23 21 20 26 26 H 1.48497 * 109.47148 * 270.00587 * 25 23 21 27 27 H 1.48507 * 109.46668 * 30.00329 * 25 23 21 28 28 H 1.48500 * 109.47063 * 150.00118 * 25 23 21 29 29 H 1.09005 * 109.46984 * 300.00256 * 1 2 3 30 30 H 1.08994 * 109.46863 * 60.00155 * 1 2 3 31 31 H 1.08999 * 109.47191 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47206 * 239.99769 * 2 1 3 33 33 H 1.08996 * 109.47167 * 59.99745 * 3 2 1 34 34 H 1.09004 * 109.47521 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47228 * 299.99887 * 3 2 1 36 36 H 1.08003 * 124.80041 * 179.69746 * 6 5 4 37 37 H 1.09000 * 109.74293 * 13.10808 * 12 11 9 38 38 H 1.08997 * 109.79171 * 252.39420 * 12 11 9 39 39 H 1.08995 * 110.36131 * 208.13967 * 15 13 12 40 40 H 1.08999 * 110.36194 * 330.45596 * 15 13 12 41 41 H 1.08992 * 110.31378 * 241.24515 * 16 15 13 42 42 H 1.09010 * 110.61070 * 118.91185 * 16 15 13 43 43 H 1.09001 * 109.74950 * 346.89298 * 19 11 9 44 44 H 1.08996 * 109.75306 * 107.58104 * 19 11 9 45 45 H 0.97007 * 120.00080 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.6736 -0.3721 2.4435 6 6 2.1754 -1.0521 3.4238 7 16 3.2165 -2.2717 2.8313 8 6 2.8924 -1.7582 1.1772 9 6 3.4567 -2.3527 -0.0393 10 8 4.4617 -1.8806 -0.5375 11 7 2.8624 -3.4217 -0.6052 12 6 3.4741 -4.0979 -1.7604 13 6 3.4548 -5.6128 -1.4908 14 1 3.9251 -6.1784 -2.2951 15 6 4.1274 -5.8729 -0.1239 16 6 2.9751 -5.7801 0.9062 17 6 1.7171 -5.4735 0.0625 18 1 0.8138 -5.9215 0.4767 19 6 1.5880 -3.9382 -0.0809 20 7 2.0390 -6.0043 -1.2844 21 6 1.2190 -6.6903 -2.1400 22 1 0.2940 -7.1141 -1.7778 23 6 1.5765 -6.8408 -3.4727 24 7 2.6170 -6.1928 -3.9522 25 14 0.5810 -7.9631 -4.5859 26 1 1.1452 -9.3358 -4.5371 27 1 -0.8306 -7.9914 -4.1254 28 1 0.6369 -7.4540 -5.9798 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.9664 -0.8737 4.4683 37 1 4.5027 -3.7588 -1.8833 38 1 2.9031 -3.8770 -2.6622 39 1 4.5774 -6.8654 -0.1054 40 1 4.8793 -5.1106 0.0800 41 1 3.1640 -4.9726 1.6134 42 1 2.8558 -6.7260 1.4347 43 1 1.3840 -3.4948 0.8938 44 1 0.7804 -3.6965 -0.7718 45 1 2.8671 -6.2983 -4.8835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029507710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:46 Heat of formation + Delta-G solvation = 27.179890 kcal Electronic energy + Delta-G solvation = -28453.649897 eV Core-core repulsion = 24791.127642 eV Total energy + Delta-G solvation = -3662.522255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89615 -40.85131 -39.25945 -35.92337 -35.50882 -34.20219 -32.54550 -31.34299 -30.93072 -28.09947 -28.00460 -26.76177 -25.56570 -25.38795 -23.49064 -22.43274 -21.30543 -20.77854 -19.81828 -18.92957 -18.49125 -17.98031 -17.20558 -16.85889 -16.61751 -16.01136 -15.65853 -15.48097 -15.25783 -15.10730 -14.90337 -14.71924 -14.50633 -14.40600 -13.86861 -13.58720 -13.44653 -13.31239 -13.21642 -13.04470 -12.89567 -12.73666 -12.62110 -12.19234 -12.00770 -11.99727 -11.93347 -11.87483 -11.58879 -11.52055 -11.30940 -11.18997 -10.79654 -10.62328 -10.39534 -9.86862 -9.83308 -8.74547 -7.84699 -5.21544 -0.52299 0.03564 0.62340 1.49731 1.50773 1.58453 1.59957 1.63960 2.05751 2.50892 3.13797 3.34731 3.39733 3.51359 3.80221 3.99258 4.00400 4.08582 4.14915 4.19007 4.27097 4.29538 4.31653 4.42659 4.53975 4.65916 4.74855 4.77759 4.81381 4.89515 4.92631 4.95770 5.00985 5.04752 5.07500 5.10911 5.22392 5.26723 5.34704 5.35064 5.50886 5.55648 5.78377 6.21670 6.38755 6.61342 6.97841 7.05537 7.72074 8.50016 9.26375 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.004198 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.488601 B = 6667.958271 C = 7254.927844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.031 4.031 3 C -0.131 4.131 4 C 0.121 3.879 5 N -0.479 5.479 6 C 0.039 3.961 7 S 0.211 5.789 8 C -0.305 4.305 9 C 0.590 3.410 10 O -0.580 6.580 11 N -0.576 5.576 12 C 0.129 3.871 13 C 0.166 3.834 14 H 0.086 0.914 15 C -0.128 4.128 16 C -0.111 4.111 17 C 0.130 3.870 18 H 0.096 0.904 19 C 0.106 3.894 20 N -0.601 5.601 21 C -0.230 4.230 22 H 0.083 0.917 23 C -0.054 4.054 24 N -0.939 5.939 25 Si 0.971 3.029 26 H -0.290 1.290 27 H -0.270 1.270 28 H -0.301 1.301 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.250 0.750 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 9.181 17.007 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.052 4.052 3 C -0.189 4.189 4 C -0.016 4.016 5 N -0.192 5.192 6 C -0.257 4.257 7 S 0.466 5.534 8 C -0.429 4.429 9 C 0.376 3.624 10 O -0.462 6.462 11 N -0.306 5.306 12 C 0.005 3.995 13 C 0.058 3.942 14 H 0.104 0.896 15 C -0.168 4.168 16 C -0.150 4.150 17 C 0.023 3.977 18 H 0.114 0.886 19 C -0.019 4.019 20 N -0.323 5.323 21 C -0.359 4.359 22 H 0.101 0.899 23 C -0.248 4.248 24 N -0.587 5.587 25 Si 0.800 3.200 26 H -0.217 1.217 27 H -0.195 1.195 28 H -0.228 1.228 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.265 0.735 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.895 8.945 17.170 19.453 hybrid contribution -0.416 -0.129 -2.163 2.206 sum -2.311 8.816 15.007 17.557 Atomic orbital electron populations 1.21696 0.91896 1.01918 1.03248 1.19846 0.97789 0.96559 0.91009 1.21698 1.00180 0.93641 1.03337 1.20503 0.94145 0.92847 0.94140 1.65965 1.25883 1.29199 0.98136 1.29437 0.96486 0.94992 1.04739 1.83899 1.43284 1.32737 0.93466 1.25259 1.11205 1.07022 0.99372 1.17170 0.82897 0.79517 0.82791 1.90770 1.27489 1.62546 1.65365 1.48138 1.23267 1.28018 1.31154 1.22092 0.96281 0.94815 0.86346 1.21761 0.85919 0.90882 0.95649 0.89637 1.22613 0.97509 1.00390 0.96244 1.22505 0.94164 1.01682 0.96630 1.22383 0.97937 0.90447 0.86965 0.88578 1.22648 0.83786 0.97049 0.98405 1.45360 1.08268 1.63479 1.15154 1.19321 1.02290 1.25147 0.89155 0.89914 1.25515 0.99896 1.01656 0.97745 1.70012 1.29622 1.45150 1.13875 0.85197 0.78657 0.78326 0.77790 1.21705 1.19488 1.22845 0.90776 0.90985 0.93512 0.92838 0.90920 0.94138 0.90618 0.73450 0.92278 0.93730 0.92049 0.92896 0.91086 0.90449 0.89241 0.93123 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.09 71.98 0.65 -2.32 16 2 C -0.03 -0.84 3.20 -11.54 -0.04 -0.88 16 3 C -0.13 -3.10 9.17 71.98 0.66 -2.44 16 4 C 0.12 3.32 5.38 42.10 0.23 3.54 16 5 N -0.48 -10.93 10.31 -190.40 -1.96 -12.89 16 6 C 0.04 0.63 12.22 130.60 1.60 2.22 16 7 S 0.21 4.27 22.98 -56.49 -1.30 2.97 16 8 C -0.30 -9.12 4.23 23.88 0.10 -9.01 16 9 C 0.59 22.45 6.44 86.45 0.56 23.01 16 10 O -0.58 -26.30 16.61 -4.32 -0.07 -26.37 16 11 N -0.58 -22.34 2.28 -818.00 -1.87 -24.21 16 12 C 0.13 5.87 5.81 86.55 0.50 6.38 16 13 C 0.17 7.55 3.10 45.46 0.14 7.69 16 14 H 0.09 4.55 6.30 -2.39 -0.02 4.54 16 15 C -0.13 -4.76 6.23 31.75 0.20 -4.56 16 16 C -0.11 -3.48 6.24 31.75 0.20 -3.28 16 17 C 0.13 4.67 4.32 45.76 0.20 4.87 16 18 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 19 C 0.11 3.66 5.88 86.85 0.51 4.17 16 20 N -0.60 -27.76 2.80 -635.07 -1.78 -29.53 16 21 C -0.23 -11.79 10.38 84.03 0.87 -10.92 16 22 H 0.08 4.05 7.84 -2.91 -0.02 4.03 16 23 C -0.05 -2.86 5.43 84.86 0.46 -2.40 16 24 N -0.94 -52.92 10.35 21.65 0.22 -52.70 16 25 Si 0.97 43.72 29.56 68.60 2.03 45.75 16 26 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 29 H 0.07 1.55 8.08 -2.38 -0.02 1.53 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.77 7.11 -2.39 -0.02 1.75 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.25 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.06 2.77 7.16 -2.39 -0.02 2.75 16 38 H 0.04 2.35 7.83 -2.39 -0.02 2.33 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 1.93 7.86 -2.39 -0.02 1.91 16 41 H 0.07 1.94 7.70 -2.39 -0.02 1.92 16 42 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.09 2.59 6.38 -2.39 -0.02 2.57 16 44 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.25 13.80 8.31 -92.70 -0.77 13.03 16 Total: -1.00 -66.53 369.24 3.10 -63.42 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.99 Total: 17.49 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 6.84 Total: 16.07 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -5.38 Total: -119.33 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.07 Total: -26.37 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.30 Total: 2.97 kcal Total: -66.53 3.10 -63.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029507710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.601 kcal (2) G-P(sol) polarization free energy of solvation -66.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds