Wall clock time and date at job start Tue Mar 31 2020 18:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47152 * 2 1 4 4 C 1.50696 * 109.46979 * 120.00006 * 2 1 3 5 5 N 1.28645 * 124.72443 * 120.24393 * 4 2 1 6 6 C 1.33562 * 115.77117 * 180.18559 * 5 4 2 7 7 C 1.47256 * 123.14219 * 179.83105 * 6 5 4 8 8 O 1.21633 * 120.00173 * 172.18005 * 7 6 5 9 9 N 1.34774 * 120.00120 * 352.18074 * 7 6 5 10 10 C 1.47172 * 120.70929 * 180.95112 * 9 7 6 11 11 C 1.53881 * 108.03352 * 132.73451 * 10 9 7 12 12 H 1.09005 * 112.09460 * 181.90416 * 11 10 9 13 13 C 1.54545 * 108.37093 * 306.25081 * 11 10 9 14 14 C 1.54827 * 104.74484 * 89.16753 * 13 11 10 15 15 C 1.54551 * 104.74392 * 0.02562 * 14 13 11 16 16 H 1.09002 * 112.67767 * 146.80984 * 15 14 13 17 17 C 1.47160 * 120.71280 * 0.92387 * 9 7 6 18 18 N 1.48308 * 107.20879 * 58.35829 * 11 10 9 19 19 C 1.36933 * 128.08149 * 106.09491 * 18 11 10 20 20 H 1.07996 * 120.00255 * 156.68041 * 19 18 11 21 21 C 1.38814 * 119.99703 * 336.68232 * 19 18 11 22 22 N 1.31617 * 120.00031 * 354.46055 * 21 19 18 23 23 Si 1.86797 * 119.99872 * 174.45706 * 21 19 18 24 24 H 1.48504 * 109.47281 * 270.00033 * 23 21 19 25 25 H 1.48501 * 109.47114 * 30.00005 * 23 21 19 26 26 H 1.48496 * 109.47567 * 150.00088 * 23 21 19 27 27 C 1.35214 * 113.71354 * 359.56240 * 6 5 4 28 28 S 1.70772 * 124.71939 * 299.97360 * 4 2 1 29 29 H 1.08990 * 109.47338 * 300.00345 * 1 2 3 30 30 H 1.09003 * 109.46857 * 60.00436 * 1 2 3 31 31 H 1.08999 * 109.47020 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47207 * 240.00110 * 2 1 3 33 33 H 1.09003 * 109.47046 * 59.99657 * 3 2 1 34 34 H 1.08993 * 109.47150 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.47062 * 300.00054 * 3 2 1 36 36 H 1.09000 * 109.74840 * 13.09954 * 10 9 7 37 37 H 1.08997 * 109.78423 * 252.39125 * 10 9 7 38 38 H 1.08992 * 110.36626 * 208.14087 * 13 11 10 39 39 H 1.09003 * 110.36245 * 330.45440 * 13 11 10 40 40 H 1.08991 * 110.31155 * 241.24839 * 14 13 11 41 41 H 1.09001 * 110.60600 * 118.91172 * 14 13 11 42 42 H 1.09002 * 109.74795 * 346.90071 * 17 9 7 43 43 H 1.09002 * 109.75085 * 107.57787 * 17 9 7 44 44 H 0.97000 * 119.99466 * 180.02562 * 22 21 19 45 45 H 1.07998 * 125.58391 * 180.26521 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7787 -1.7581 1.2183 6 6 3.1165 -2.2443 2.4156 7 6 3.9610 -3.4379 2.5907 8 8 4.3512 -3.7494 3.6998 9 7 4.3015 -4.1852 1.5221 10 6 5.1274 -5.3928 1.6819 11 6 4.4670 -6.5306 0.8837 12 1 5.0100 -7.4705 0.9838 13 6 2.9957 -6.6553 1.3397 14 6 2.2132 -5.6919 0.4141 15 6 3.2870 -5.0782 -0.5127 16 1 2.9079 -4.8667 -1.5126 17 6 3.8549 -3.8115 0.1706 18 7 4.3779 -6.0825 -0.5273 19 6 5.1310 -6.4955 -1.5937 20 1 4.7467 -6.3938 -2.5979 21 6 6.3885 -7.0448 -1.3841 22 7 6.9024 -7.0692 -0.1726 23 14 7.3513 -7.7495 -2.8214 24 1 7.0221 -9.1889 -2.9795 25 1 6.9911 -7.0200 -4.0637 26 1 8.8060 -7.6000 -2.5637 27 6 2.6154 -1.5347 3.4518 28 16 1.6953 -0.2328 2.8350 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 5.1813 -5.6653 2.7359 37 1 6.1304 -5.2073 1.2977 38 1 2.6440 -7.6789 1.2108 39 1 2.8936 -6.3465 2.3801 40 1 1.7288 -4.9124 1.0021 41 1 1.4743 -6.2385 -0.1718 42 1 3.0772 -3.0507 0.2369 43 1 4.6983 -3.4269 -0.4028 44 1 7.7812 -7.4527 -0.0263 45 1 2.7715 -1.7542 4.4976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029517428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:19 Heat of formation + Delta-G solvation = 35.372248 kcal Electronic energy + Delta-G solvation = -28074.603168 eV Core-core repulsion = 24412.436161 eV Total energy + Delta-G solvation = -3662.167007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.03482 -40.53581 -39.15626 -36.40522 -35.41622 -34.20118 -32.24943 -31.15045 -31.05003 -28.24746 -27.99433 -26.84484 -25.58133 -25.24528 -23.63286 -21.59933 -21.25931 -21.03713 -20.22815 -19.48458 -18.22095 -17.28898 -17.15914 -17.03398 -16.48052 -16.29958 -15.93513 -15.55916 -15.16276 -14.92855 -14.71232 -14.60020 -14.48650 -14.20127 -13.74450 -13.60747 -13.33360 -13.28909 -13.05615 -12.96744 -12.85523 -12.74253 -12.61592 -12.46657 -12.09084 -12.01528 -11.91630 -11.80085 -11.69096 -11.53891 -11.17862 -11.15335 -10.69280 -10.66825 -10.20527 -9.90453 -9.61822 -8.60961 -7.88576 -5.27834 -0.49664 0.26085 0.58789 0.90204 1.47368 1.47836 1.56624 2.13461 2.27039 2.49711 2.87244 3.32665 3.51301 3.62504 3.95873 4.06681 4.10099 4.11744 4.20291 4.21378 4.23026 4.33296 4.45897 4.56225 4.61998 4.72782 4.83438 4.86299 4.90962 4.96819 5.00337 5.01175 5.04876 5.07970 5.19488 5.20693 5.36649 5.38749 5.42168 5.45813 5.53952 5.58359 5.81327 6.23093 6.39158 6.60666 7.03969 7.11087 7.69820 8.54072 9.24667 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.003754 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.572811 B = 7457.601636 C = 8167.467785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.024 4.024 3 C -0.146 4.146 4 C 0.020 3.980 5 N -0.460 5.460 6 C -0.005 4.005 7 C 0.572 3.428 8 O -0.590 6.590 9 N -0.572 5.572 10 C 0.124 3.876 11 C 0.173 3.827 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.105 4.105 15 C 0.127 3.873 16 H 0.088 0.912 17 C 0.069 3.931 18 N -0.604 5.604 19 C -0.238 4.238 20 H 0.077 0.923 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.269 1.269 26 H -0.299 1.299 27 C -0.241 4.241 28 S 0.306 5.694 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.164 0.836 43 H 0.026 0.974 44 H 0.247 0.753 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.190 18.858 2.628 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.258 4.258 5 N -0.176 5.176 6 C -0.139 4.139 7 C 0.359 3.641 8 O -0.473 6.473 9 N -0.300 5.300 10 C -0.001 4.001 11 C 0.065 3.935 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.144 4.144 15 C 0.020 3.980 16 H 0.105 0.895 17 C -0.055 4.055 18 N -0.326 5.326 19 C -0.367 4.367 20 H 0.095 0.905 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.194 1.194 26 H -0.226 1.226 27 C -0.383 4.383 28 S 0.565 5.435 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.180 0.820 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -17.149 19.157 3.023 25.889 hybrid contribution 2.283 -1.929 -0.323 3.007 sum -14.866 17.228 2.700 22.915 Atomic orbital electron populations 1.21951 0.91292 1.02870 1.04222 1.20041 0.97446 0.95888 0.91209 1.21956 1.01171 0.93013 1.04279 1.28053 0.99309 0.96124 1.02270 1.66692 1.14665 1.11500 1.24742 1.20126 1.05202 0.99796 0.88772 1.17714 0.80101 0.82455 0.83874 1.90711 1.58255 1.72695 1.25633 1.48073 1.49082 1.24986 1.07890 1.22097 0.93754 0.85482 0.98745 1.21500 0.92772 0.94918 0.84298 0.91232 1.22591 0.96478 0.99363 0.98143 1.22393 0.96941 0.97947 0.97128 1.22425 0.89281 0.88829 0.97451 0.89451 1.23860 1.01090 1.00114 0.80460 1.45325 1.39077 1.43707 1.04460 1.19279 0.95417 1.35111 0.86921 0.90504 1.25743 0.97151 1.02803 0.98924 1.70053 1.17204 1.49837 1.21183 0.85158 0.77198 0.78103 0.79261 1.21411 1.19360 1.22573 1.26831 1.04199 1.01481 1.05826 1.82203 1.42149 1.22085 0.97078 0.91038 0.89233 0.92646 0.88624 0.90984 0.93230 0.89155 0.92537 0.93443 0.91954 0.92956 0.91860 0.90885 0.82030 0.95517 0.94354 0.79142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.09 71.98 0.65 -0.66 16 2 C -0.02 -0.32 3.34 -11.54 -0.04 -0.36 16 3 C -0.15 -1.45 9.09 71.98 0.65 -0.79 16 4 C 0.02 0.41 6.00 88.57 0.53 0.94 16 5 N -0.46 -13.15 6.65 -180.84 -1.20 -14.35 16 6 C -0.01 -0.16 6.53 40.56 0.26 0.10 16 7 C 0.57 24.02 7.68 86.61 0.66 24.68 16 8 O -0.59 -27.73 16.20 -4.13 -0.07 -27.80 16 9 N -0.57 -25.33 2.28 -817.38 -1.87 -27.20 16 10 C 0.12 6.22 5.77 86.55 0.50 6.72 16 11 C 0.17 8.60 3.05 45.47 0.14 8.74 16 12 H 0.07 3.93 6.84 -2.38 -0.02 3.91 16 13 C -0.13 -5.21 6.23 31.74 0.20 -5.01 16 14 C -0.11 -3.84 6.24 31.75 0.20 -3.64 16 15 C 0.13 5.27 4.32 45.76 0.20 5.47 16 16 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 17 C 0.07 2.82 5.62 86.84 0.49 3.31 16 18 N -0.60 -30.68 2.77 -635.18 -1.76 -32.44 16 19 C -0.24 -13.12 10.34 84.03 0.87 -12.26 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 21 C -0.05 -2.88 5.43 84.86 0.46 -2.42 16 22 N -0.94 -55.57 10.13 21.65 0.22 -55.35 16 23 Si 0.97 45.60 29.56 68.60 2.03 47.62 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 27 C -0.24 -5.97 10.62 67.12 0.71 -5.26 16 28 S 0.31 4.66 22.22 -56.49 -1.26 3.41 16 29 H 0.07 0.47 7.91 -2.39 -0.02 0.45 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 0.52 7.91 -2.39 -0.02 0.50 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.06 2.87 7.11 -2.39 -0.02 2.85 16 37 H 0.05 2.75 7.24 -2.39 -0.02 2.73 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.05 2.13 7.86 -2.39 -0.02 2.11 16 40 H 0.06 2.15 7.87 -2.39 -0.02 2.13 16 41 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.16 5.74 3.91 -62.63 -0.24 5.49 16 43 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 44 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 45 H 0.19 4.45 8.04 -2.91 -0.02 4.43 16 Total: -1.00 -71.80 364.59 3.35 -68.45 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.76 Total: 18.10 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 6.49 Total: 19.56 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -4.61 Total: -129.34 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.07 Total: -27.80 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.26 Total: 3.41 kcal Total: -71.80 3.35 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029517428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.823 kcal (2) G-P(sol) polarization free energy of solvation -71.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds