Wall clock time and date at job start Tue Mar 31 2020 18:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47059 * 2 1 4 4 C 1.53001 * 109.47137 * 239.99804 * 2 1 3 5 5 C 1.50698 * 109.47053 * 120.00156 * 2 1 3 6 6 C 1.34228 * 122.10924 * 74.99449 * 5 2 1 7 7 S 1.71072 * 109.09380 * 179.70882 * 6 5 2 8 8 C 1.76099 * 90.30048 * 0.34200 * 7 6 5 9 9 C 1.47257 * 125.54216 * 179.97438 * 8 7 6 10 10 O 1.21621 * 119.99530 * 179.69092 * 9 8 7 11 11 N 1.34773 * 120.00323 * 359.69333 * 9 8 7 12 12 C 1.47866 * 126.94060 * 359.97438 * 11 9 8 13 13 C 1.56017 * 105.10331 * 182.03654 * 12 11 9 14 14 H 1.09001 * 116.25265 * 159.68404 * 13 12 11 15 15 C 1.57087 * 99.60711 * 32.80091 * 13 12 11 16 16 C 1.49285 * 126.94443 * 180.02562 * 11 9 8 17 17 H 1.08997 * 116.15613 * 15.80836 * 16 11 9 18 18 C 1.56025 * 104.09121 * 246.66258 * 16 11 9 19 19 N 1.47870 * 105.10554 * 288.76986 * 18 16 11 20 20 C 1.36932 * 126.94635 * 182.00525 * 19 18 16 21 21 H 1.08004 * 120.00382 * 179.97438 * 20 19 18 22 22 C 1.38811 * 120.00086 * 359.97438 * 20 19 18 23 23 N 1.31626 * 119.99846 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00456 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46731 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47064 * 120.00108 * 24 22 20 27 27 H 1.48493 * 109.47543 * 240.00604 * 24 22 20 28 28 N 1.30562 * 108.91553 * 359.65830 * 8 7 6 29 29 H 1.08997 * 109.47255 * 299.99935 * 1 2 3 30 30 H 1.09001 * 109.46766 * 59.99841 * 1 2 3 31 31 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47135 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47462 * 299.99733 * 3 2 1 34 34 H 1.08997 * 109.47034 * 59.99930 * 3 2 1 35 35 H 1.08993 * 109.47297 * 300.00579 * 4 2 1 36 36 H 1.09001 * 109.47003 * 60.00500 * 4 2 1 37 37 H 1.08995 * 109.46911 * 180.02562 * 4 2 1 38 38 H 1.08007 * 125.45731 * 359.94800 * 6 5 2 39 39 H 1.08998 * 110.31959 * 63.12605 * 12 11 9 40 40 H 1.09003 * 110.31615 * 300.93656 * 12 11 9 41 41 H 1.09000 * 112.36277 * 64.27687 * 15 13 12 42 42 H 1.08998 * 112.36463 * 191.71438 * 15 13 12 43 43 H 1.09000 * 110.31654 * 47.67886 * 18 16 11 44 44 H 1.09001 * 110.31425 * 169.76298 * 18 16 11 45 45 H 0.97003 * 119.99853 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 6 1.9926 -2.0469 1.3488 7 16 2.6497 -2.4943 2.8636 8 6 2.9330 -0.8001 3.2515 9 6 3.5294 -0.2959 4.5000 10 8 3.6843 0.8997 4.6603 11 7 3.9037 -1.1593 5.4648 12 6 3.7867 -2.6330 5.4327 13 6 4.3184 -3.1132 6.8187 14 1 4.0097 -4.1097 7.1346 15 6 3.8589 -1.9035 7.7092 16 6 4.5191 -0.8210 6.7821 17 1 4.4393 0.2195 7.0967 18 6 5.9630 -1.4046 6.6880 19 7 5.7901 -2.8720 6.7469 20 6 6.7798 -3.8184 6.7378 21 1 6.5249 -4.8668 6.7860 22 6 8.1106 -3.4303 6.6665 23 7 8.4213 -2.1525 6.6083 24 14 9.4607 -4.7212 6.6533 25 1 8.8526 -6.0741 6.7264 26 1 10.2489 -4.6003 5.4006 27 1 10.3537 -4.5156 7.8218 28 7 2.5344 -0.0641 2.2495 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 1.6108 -2.7307 0.6051 39 1 4.3985 -3.0438 4.6296 40 1 2.7450 -2.9272 5.3045 41 1 2.7740 -1.8077 7.7509 42 1 4.3059 -1.9268 8.7031 43 1 6.4272 -1.1158 5.7450 44 1 6.5663 -1.0591 7.5274 45 1 9.3513 -1.8813 6.5589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032457538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:51 Heat of formation + Delta-G solvation = 66.030904 kcal Electronic energy + Delta-G solvation = -27210.397317 eV Core-core repulsion = 23549.559769 eV Total energy + Delta-G solvation = -3660.837548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.50989 -40.01716 -37.82789 -35.98772 -33.76196 -31.79124 -30.20464 -29.15834 -28.69625 -27.55296 -27.44786 -25.91069 -25.25307 -23.69355 -22.56450 -20.30881 -20.00205 -19.07644 -18.72492 -17.77751 -16.97756 -16.32516 -16.04573 -15.64971 -15.33273 -14.83265 -14.49863 -14.03857 -14.03062 -13.75141 -13.63014 -13.27101 -13.09842 -12.64047 -12.40488 -12.26093 -12.08747 -11.98055 -11.79836 -11.78513 -11.41103 -11.17422 -11.09520 -11.07056 -10.98049 -10.94749 -10.73151 -10.64210 -10.30520 -10.16725 -10.09507 -9.72316 -9.60732 -9.46531 -8.77954 -8.71227 -8.17487 -7.00945 -5.82858 -3.18088 0.33713 1.27055 1.71865 2.43979 2.93309 3.33888 3.38788 3.42259 3.44861 4.15227 4.36040 4.57098 4.67304 4.83194 4.96415 5.04400 5.05469 5.11227 5.25369 5.27526 5.39588 5.47259 5.50939 5.54173 5.57950 5.66911 5.73580 5.74126 5.75705 5.81078 5.89328 5.99875 6.11888 6.14619 6.15472 6.29737 6.33257 6.35500 6.48431 6.55280 7.34726 7.39452 7.61529 7.66635 7.85298 8.02759 8.36086 9.03419 9.64470 10.32013 11.29192 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017095 B = 0.003283 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.511995 B = 8527.702226 C = 9002.385434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 C -0.131 4.131 4 C -0.139 4.139 5 C 0.067 3.933 6 C -0.290 4.290 7 S 0.202 5.798 8 C 0.009 3.991 9 C 0.605 3.395 10 O -0.516 6.516 11 N -0.597 5.597 12 C 0.066 3.934 13 C 0.148 3.852 14 H 0.112 0.888 15 C -0.150 4.150 16 C 0.103 3.897 17 H 0.119 0.881 18 C 0.172 3.828 19 N -0.596 5.596 20 C -0.234 4.234 21 H 0.083 0.917 22 C -0.004 4.004 23 N -0.917 5.917 24 Si 0.913 3.087 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 N -0.398 5.398 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.177 0.823 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.233 -0.882 -9.643 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.001 3.999 3 C -0.189 4.189 4 C -0.197 4.197 5 C -0.071 4.071 6 C -0.430 4.430 7 S 0.459 5.541 8 C -0.267 4.267 9 C 0.389 3.611 10 O -0.392 6.392 11 N -0.332 5.332 12 C -0.061 4.061 13 C 0.039 3.961 14 H 0.129 0.871 15 C -0.189 4.189 16 C 0.002 3.998 17 H 0.137 0.863 18 C 0.047 3.953 19 N -0.320 5.320 20 C -0.362 4.362 21 H 0.100 0.900 22 C -0.201 4.201 23 N -0.563 5.563 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 N -0.114 5.114 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.194 0.806 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.608 -0.589 -9.051 18.052 hybrid contribution 0.500 -0.337 -1.125 1.276 sum -15.108 -0.927 -10.176 18.239 Atomic orbital electron populations 1.21875 0.93371 1.01917 1.02227 1.19183 0.95435 0.95624 0.89664 1.21722 1.01531 0.93832 1.01776 1.21923 1.01559 0.99990 0.96196 1.20131 1.01304 0.89701 0.95944 1.26734 1.10567 1.00338 1.05359 1.84376 1.51334 1.10461 1.07971 1.27510 1.07684 0.91929 0.99558 1.16234 0.78861 0.85409 0.80609 1.90816 1.55450 1.14377 1.78579 1.49015 1.59786 1.07247 1.17130 1.23586 0.99513 0.79608 1.03346 1.23145 0.86332 0.96709 0.89958 0.87069 1.24171 0.99125 0.96645 0.98998 1.24463 0.96102 0.99226 0.80036 0.86273 1.21983 0.88768 0.82967 1.01633 1.45281 0.98746 1.02148 1.85802 1.19085 0.84974 0.87567 1.44574 0.89959 1.24837 0.97204 0.96310 1.01785 1.69920 1.17173 1.13326 1.55927 0.86041 0.82032 0.80310 0.77290 1.20405 1.21758 1.21684 1.66444 1.09200 1.36689 0.99033 0.92314 0.91907 0.92598 0.92393 0.92803 0.91549 0.92495 0.91830 0.92274 0.80567 0.90208 0.92155 0.91360 0.89254 0.93253 0.92118 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.42 37.16 0.31 -0.92 16 2 C 0.00 0.04 0.90 -155.66 -0.14 -0.10 16 3 C -0.13 -1.52 7.89 37.16 0.29 -1.23 16 4 C -0.14 -1.23 8.12 37.16 0.30 -0.93 16 5 C 0.07 0.92 5.38 -84.49 -0.45 0.46 16 6 C -0.29 -3.42 10.10 29.32 0.30 -3.12 16 7 S 0.20 2.64 18.85 -107.50 -2.03 0.61 16 8 C 0.01 0.16 7.40 -14.43 -0.11 0.05 16 9 C 0.61 11.94 7.88 -12.60 -0.10 11.84 16 10 O -0.52 -11.77 17.41 5.26 0.09 -11.68 16 11 N -0.60 -11.01 2.95 -158.11 -0.47 -11.47 16 12 C 0.07 1.08 4.57 -1.68 -0.01 1.07 16 13 C 0.15 2.57 5.53 -62.54 -0.35 2.22 16 14 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 15 C -0.15 -2.37 6.81 -22.31 -0.15 -2.52 16 16 C 0.10 1.93 5.24 -62.56 -0.33 1.60 16 17 H 0.12 2.14 8.05 -51.93 -0.42 1.73 16 18 C 0.17 3.97 4.76 -1.67 -0.01 3.97 16 19 N -0.60 -13.68 3.02 -156.32 -0.47 -14.15 16 20 C -0.23 -5.99 10.38 -15.06 -0.16 -6.14 16 21 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 22 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -26.11 10.56 55.49 0.59 -25.53 16 24 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 N -0.40 -6.78 9.53 -7.69 -0.07 -6.85 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.87 7.95 -51.93 -0.41 0.46 16 35 H 0.06 0.44 7.07 -51.93 -0.37 0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.18 1.54 7.23 -52.48 -0.38 1.16 16 39 H 0.08 1.43 7.20 -51.93 -0.37 1.05 16 40 H 0.06 0.81 6.94 -51.93 -0.36 0.45 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 1.33 7.68 -51.93 -0.40 0.94 16 44 H 0.06 1.54 7.46 -51.93 -0.39 1.16 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -31.67 369.19 -9.38 -41.05 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.87 Total: 0.21 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -0.69 Total: 6.06 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.43 Total: -58.01 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.03 Total: 0.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.67 -9.38 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032457538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.080 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds