Wall clock time and date at job start Tue Mar 31 2020 18:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47403 * 2 1 4 4 C 1.52996 * 109.46838 * 239.99907 * 2 1 3 5 5 C 1.50695 * 109.46897 * 119.99966 * 2 1 3 6 6 N 1.28651 * 124.72028 * 60.28461 * 5 2 1 7 7 C 1.33561 * 115.76943 * 180.15439 * 6 5 2 8 8 C 1.47265 * 123.14607 * 179.82943 * 7 6 5 9 9 O 1.21629 * 120.00135 * 179.72323 * 8 7 6 10 10 N 1.34776 * 119.99722 * 359.72522 * 8 7 6 11 11 C 1.47873 * 126.94502 * 0.02562 * 10 8 7 12 12 C 1.58431 * 104.82912 * 182.30453 * 11 10 8 13 13 H 1.08999 * 116.62672 * 159.51916 * 12 11 10 14 14 C 1.57433 * 99.62629 * 32.32500 * 12 11 10 15 15 C 1.49295 * 126.94463 * 180.02562 * 10 8 7 16 16 H 1.08998 * 116.14890 * 15.83923 * 15 10 8 17 17 C 1.56020 * 104.09240 * 246.70001 * 15 10 8 18 18 N 1.47873 * 105.10255 * 287.91883 * 17 15 10 19 19 C 1.36938 * 126.94782 * 181.97943 * 18 17 15 20 20 H 1.07999 * 120.00183 * 185.02510 * 19 18 17 21 21 C 1.38814 * 119.99739 * 5.02618 * 19 18 17 22 22 N 1.31627 * 119.99900 * 352.81913 * 21 19 18 23 23 Si 1.86795 * 120.00132 * 173.09983 * 21 19 18 24 24 H 1.48497 * 109.47501 * 94.98491 * 23 21 19 25 25 H 1.48498 * 109.47190 * 214.98689 * 23 21 19 26 26 H 1.48501 * 109.46774 * 334.98463 * 23 21 19 27 27 C 1.35213 * 113.71319 * 359.55171 * 7 6 5 28 28 S 1.70774 * 124.72311 * 239.97149 * 5 2 1 29 29 H 1.09003 * 109.46934 * 300.00545 * 1 2 3 30 30 H 1.09001 * 109.47164 * 59.99947 * 1 2 3 31 31 H 1.08996 * 109.47780 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47072 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47003 * 300.00151 * 3 2 1 34 34 H 1.09004 * 109.47005 * 59.99731 * 3 2 1 35 35 H 1.09002 * 109.47477 * 300.00398 * 4 2 1 36 36 H 1.09001 * 109.47124 * 60.00121 * 4 2 1 37 37 H 1.08994 * 109.47055 * 180.02562 * 4 2 1 38 38 H 1.08998 * 110.31431 * 300.90616 * 11 10 8 39 39 H 1.09003 * 110.31378 * 62.99492 * 11 10 8 40 40 H 1.09003 * 112.53411 * 192.40794 * 14 12 11 41 41 H 1.09001 * 112.31252 * 64.86872 * 14 12 11 42 42 H 1.08995 * 110.31511 * 169.01301 * 17 15 10 43 43 H 1.08998 * 110.31706 * 46.82278 * 17 15 10 44 44 H 0.97000 * 119.99826 * 179.97438 * 22 21 19 45 45 H 1.08001 * 125.58652 * 180.22986 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 7 1.7823 -1.9385 1.5209 7 6 2.3165 -2.3861 2.6602 8 6 2.1315 -3.7624 3.1502 9 8 2.6488 -4.1110 4.1944 10 7 1.3888 -4.6358 2.4416 11 6 0.6951 -4.3787 1.1613 12 6 -0.0605 -5.7314 0.8307 13 1 -0.8948 -5.6668 0.1322 14 6 -0.3810 -6.2181 2.2932 15 6 1.1004 -6.0584 2.7907 16 1 1.3017 -6.3505 3.8213 17 6 1.8360 -6.8775 1.6852 18 7 1.0396 -6.6688 0.4568 19 6 1.2684 -7.2193 -0.7760 20 1 0.6610 -6.9262 -1.6195 21 6 2.2812 -8.1541 -0.9415 22 7 3.1114 -8.4072 0.0482 23 14 2.4708 -9.0471 -2.5711 24 1 3.4708 -8.3392 -3.4102 25 1 2.9284 -10.4379 -2.3232 26 1 1.1639 -9.0742 -3.2756 27 6 3.0481 -1.4590 3.3188 28 16 3.0188 0.0005 2.4295 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 -0.0218 -3.5656 1.2759 39 1 1.4174 -4.1384 0.3811 40 1 -0.7196 -7.2537 2.3241 41 1 -1.0671 -5.5480 2.8113 42 1 1.8560 -7.9351 1.9480 43 1 2.8498 -6.5017 1.5472 44 1 3.8188 -9.0607 -0.0674 45 1 3.5659 -1.6151 4.2536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032683981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:43 Heat of formation + Delta-G solvation = 61.784994 kcal Electronic energy + Delta-G solvation = -27730.224143 eV Core-core repulsion = 24069.202478 eV Total energy + Delta-G solvation = -3661.021665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.52624 -39.38054 -37.73818 -36.53876 -33.55870 -31.50042 -30.05723 -28.98951 -28.37644 -27.66805 -27.39540 -25.76342 -25.12644 -23.80878 -22.38057 -20.16190 -19.73381 -19.45089 -18.66019 -17.97102 -16.74299 -16.02284 -15.79019 -15.51090 -15.24840 -14.77392 -14.43959 -14.31520 -13.94583 -13.64360 -13.49924 -13.21994 -12.94801 -12.51264 -12.33885 -12.26666 -11.90590 -11.84922 -11.76412 -11.68507 -11.55400 -11.23220 -11.22852 -11.12805 -10.98318 -10.80492 -10.70512 -10.53568 -10.21531 -10.05500 -9.71854 -9.63021 -9.58347 -9.55769 -8.88760 -8.63304 -7.90696 -6.86097 -5.73957 -3.06378 0.56959 1.22627 1.62499 2.17940 3.39131 3.43609 3.44457 3.46938 3.70233 3.85873 4.46068 4.51700 4.67529 4.74098 4.99252 5.13283 5.22017 5.25229 5.29627 5.36281 5.40448 5.43797 5.56633 5.58023 5.63885 5.69427 5.71557 5.75216 5.81671 5.82382 5.95289 6.11936 6.20949 6.23470 6.30736 6.40170 6.49130 6.62900 6.68101 6.85295 7.47073 7.48116 7.57567 7.75407 8.10916 8.15006 8.57488 9.13888 9.75369 10.45678 11.38705 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.003978 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.985654 B = 7036.600606 C = 8051.323876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.013 3.987 3 C -0.154 4.154 4 C -0.136 4.136 5 C 0.037 3.963 6 N -0.426 5.426 7 C 0.027 3.973 8 C 0.600 3.400 9 O -0.554 6.554 10 N -0.586 5.586 11 C 0.103 3.897 12 C 0.137 3.863 13 H 0.106 0.894 14 C -0.149 4.149 15 C 0.097 3.903 16 H 0.113 0.887 17 C 0.175 3.825 18 N -0.597 5.597 19 C -0.229 4.229 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.280 1.280 27 C -0.236 4.236 28 S 0.187 5.813 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.253 0.747 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 20.345 2.101 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 C -0.212 4.212 4 C -0.195 4.195 5 C -0.244 4.244 6 N -0.140 5.140 7 C -0.107 4.107 8 C 0.386 3.614 9 O -0.434 6.434 10 N -0.317 5.317 11 C -0.022 4.022 12 C 0.028 3.972 13 H 0.124 0.876 14 C -0.189 4.189 15 C -0.005 4.005 16 H 0.131 0.869 17 C 0.050 3.950 18 N -0.321 5.321 19 C -0.357 4.357 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.378 4.378 28 S 0.446 5.554 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.229 20.643 2.360 21.203 hybrid contribution 0.338 -1.424 -0.440 1.528 sum -3.891 19.219 1.920 19.703 Atomic orbital electron populations 1.21844 0.92186 1.03392 1.01866 1.19213 0.96662 0.93699 0.89471 1.22031 1.01671 0.94400 1.03090 1.21862 1.01219 1.01535 0.94896 1.27260 1.01644 0.93690 1.01762 1.67021 1.21178 1.11339 1.14490 1.20495 1.00875 0.97036 0.92327 1.16659 0.79101 0.82380 0.83291 1.90767 1.50535 1.78182 1.23879 1.48954 1.47750 1.11830 1.23120 1.23701 0.95846 0.98267 0.84398 1.23803 0.91560 0.88607 0.93265 0.87610 1.24170 0.94964 1.01590 0.98187 1.24370 0.96054 0.80048 1.00044 0.86943 1.21919 0.93316 0.96907 0.82891 1.45241 1.27674 1.52135 1.07043 1.19041 1.14280 1.17159 0.85205 0.90189 1.24821 0.97916 0.99697 0.97790 1.69940 1.18799 1.36732 1.31044 0.86142 0.77669 0.79316 0.82884 1.21782 1.21672 1.20564 1.26572 1.06378 0.97566 1.07270 1.82646 1.45974 1.12688 1.14104 0.92660 0.91634 0.91136 0.91838 0.90643 0.91905 0.90907 0.91644 0.92523 0.92465 0.90723 0.89650 0.91741 0.92438 0.93726 0.93661 0.79708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.45 37.16 0.31 -0.88 16 2 C 0.01 0.13 0.99 -155.67 -0.15 -0.03 16 3 C -0.15 -1.06 7.53 37.16 0.28 -0.78 16 4 C -0.14 -1.40 8.44 37.16 0.31 -1.08 16 5 C 0.04 0.45 5.74 -13.61 -0.08 0.37 16 6 N -0.43 -6.66 7.87 -8.51 -0.07 -6.73 16 7 C 0.03 0.47 6.63 -84.52 -0.56 -0.09 16 8 C 0.60 12.28 7.87 -12.59 -0.10 12.18 16 9 O -0.55 -12.48 17.06 5.25 0.09 -12.39 16 10 N -0.59 -11.86 2.95 -156.50 -0.46 -12.33 16 11 C 0.10 1.95 5.00 -0.29 0.00 1.95 16 12 C 0.14 2.67 5.63 -60.96 -0.34 2.32 16 13 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 14 C -0.15 -2.66 6.86 -22.10 -0.15 -2.81 16 15 C 0.10 1.99 5.19 -62.55 -0.32 1.66 16 16 H 0.11 2.21 8.05 -51.93 -0.42 1.79 16 17 C 0.17 4.34 4.76 -1.67 -0.01 4.33 16 18 N -0.60 -14.76 3.02 -154.62 -0.47 -15.23 16 19 C -0.23 -6.20 10.36 -15.06 -0.16 -6.36 16 20 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 21 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 22 N -0.92 -27.23 10.61 55.49 0.59 -26.64 16 23 Si 0.91 21.96 29.56 -169.99 -5.02 16.94 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C -0.24 -3.34 10.62 29.66 0.31 -3.03 16 28 S 0.19 1.97 21.28 -107.50 -2.29 -0.31 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.43 7.91 -51.93 -0.41 0.02 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.39 7.91 -51.93 -0.41 -0.02 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.98 7.60 -51.93 -0.39 0.58 16 39 H 0.07 1.60 7.80 -51.93 -0.41 1.19 16 40 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.55 7.39 -51.93 -0.38 1.17 16 43 H 0.04 1.28 7.76 -51.93 -0.40 0.88 16 44 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.19 2.43 8.03 -52.49 -0.42 2.01 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -32.71 373.24 -9.78 -42.48 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.02 Total: 1.08 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.75 Total: 7.51 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.41 Total: -60.92 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.29 Total: -0.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.71 -9.78 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032683981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.269 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds