Wall clock time and date at job start Tue Mar 31 2020 18:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47403 * 2 1 4 4 C 1.52996 * 109.46838 * 239.99907 * 2 1 3 5 5 C 1.50695 * 109.46897 * 119.99966 * 2 1 3 6 6 N 1.28651 * 124.72028 * 60.28461 * 5 2 1 7 7 C 1.33561 * 115.76943 * 180.15439 * 6 5 2 8 8 C 1.47265 * 123.14607 * 179.82943 * 7 6 5 9 9 O 1.21629 * 120.00135 * 179.72323 * 8 7 6 10 10 N 1.34776 * 119.99722 * 359.72522 * 8 7 6 11 11 C 1.47873 * 126.94502 * 0.02562 * 10 8 7 12 12 C 1.58431 * 104.82912 * 182.30453 * 11 10 8 13 13 H 1.08999 * 116.62672 * 159.51916 * 12 11 10 14 14 C 1.57433 * 99.62629 * 32.32500 * 12 11 10 15 15 C 1.49295 * 126.94463 * 180.02562 * 10 8 7 16 16 H 1.08998 * 116.14890 * 15.83923 * 15 10 8 17 17 C 1.56020 * 104.09240 * 246.70001 * 15 10 8 18 18 N 1.47873 * 105.10255 * 287.91883 * 17 15 10 19 19 C 1.36938 * 126.94782 * 181.97943 * 18 17 15 20 20 H 1.07999 * 120.00183 * 185.02510 * 19 18 17 21 21 C 1.38814 * 119.99739 * 5.02618 * 19 18 17 22 22 N 1.31627 * 119.99900 * 352.81913 * 21 19 18 23 23 Si 1.86795 * 120.00132 * 173.09983 * 21 19 18 24 24 H 1.48497 * 109.47501 * 94.98491 * 23 21 19 25 25 H 1.48498 * 109.47190 * 214.98689 * 23 21 19 26 26 H 1.48501 * 109.46774 * 334.98463 * 23 21 19 27 27 C 1.35213 * 113.71319 * 359.55171 * 7 6 5 28 28 S 1.70774 * 124.72311 * 239.97149 * 5 2 1 29 29 H 1.09003 * 109.46934 * 300.00545 * 1 2 3 30 30 H 1.09001 * 109.47164 * 59.99947 * 1 2 3 31 31 H 1.08996 * 109.47780 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47072 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47003 * 300.00151 * 3 2 1 34 34 H 1.09004 * 109.47005 * 59.99731 * 3 2 1 35 35 H 1.09002 * 109.47477 * 300.00398 * 4 2 1 36 36 H 1.09001 * 109.47124 * 60.00121 * 4 2 1 37 37 H 1.08994 * 109.47055 * 180.02562 * 4 2 1 38 38 H 1.08998 * 110.31431 * 300.90616 * 11 10 8 39 39 H 1.09003 * 110.31378 * 62.99492 * 11 10 8 40 40 H 1.09003 * 112.53411 * 192.40794 * 14 12 11 41 41 H 1.09001 * 112.31252 * 64.86872 * 14 12 11 42 42 H 1.08995 * 110.31511 * 169.01301 * 17 15 10 43 43 H 1.08998 * 110.31706 * 46.82278 * 17 15 10 44 44 H 0.97000 * 119.99826 * 179.97438 * 22 21 19 45 45 H 1.08001 * 125.58652 * 180.22986 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 7 1.7823 -1.9385 1.5209 7 6 2.3165 -2.3861 2.6602 8 6 2.1315 -3.7624 3.1502 9 8 2.6488 -4.1110 4.1944 10 7 1.3888 -4.6358 2.4416 11 6 0.6951 -4.3787 1.1613 12 6 -0.0605 -5.7314 0.8307 13 1 -0.8948 -5.6668 0.1322 14 6 -0.3810 -6.2181 2.2932 15 6 1.1004 -6.0584 2.7907 16 1 1.3017 -6.3505 3.8213 17 6 1.8360 -6.8775 1.6852 18 7 1.0396 -6.6688 0.4568 19 6 1.2684 -7.2193 -0.7760 20 1 0.6610 -6.9262 -1.6195 21 6 2.2812 -8.1541 -0.9415 22 7 3.1114 -8.4072 0.0482 23 14 2.4708 -9.0471 -2.5711 24 1 3.4708 -8.3392 -3.4102 25 1 2.9284 -10.4379 -2.3232 26 1 1.1639 -9.0742 -3.2756 27 6 3.0481 -1.4590 3.3188 28 16 3.0188 0.0005 2.4295 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 -0.0218 -3.5656 1.2759 39 1 1.4174 -4.1384 0.3811 40 1 -0.7196 -7.2537 2.3241 41 1 -1.0671 -5.5480 2.8113 42 1 1.8560 -7.9351 1.9480 43 1 2.8498 -6.5017 1.5472 44 1 3.8188 -9.0607 -0.0674 45 1 3.5659 -1.6151 4.2536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032683981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:43 Heat of formation + Delta-G solvation = 41.758695 kcal Electronic energy + Delta-G solvation = -27731.092548 eV Core-core repulsion = 24069.202478 eV Total energy + Delta-G solvation = -3661.890070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89387 -40.76531 -39.22012 -37.46745 -35.47856 -33.34322 -31.24047 -30.71456 -30.15661 -28.27967 -28.13327 -26.99397 -26.95378 -25.37648 -23.82667 -21.67576 -21.37724 -20.42931 -20.06750 -19.40383 -18.48100 -17.52968 -17.20678 -16.90792 -16.58290 -16.18326 -15.79411 -15.63317 -15.12584 -15.03388 -14.85448 -14.37261 -14.34549 -13.89794 -13.61357 -13.37786 -13.19473 -13.10551 -13.05308 -12.90479 -12.74039 -12.69988 -12.55768 -12.51726 -12.31550 -12.18316 -12.05589 -11.95188 -11.94057 -11.82547 -11.55360 -11.27127 -10.78468 -10.60655 -10.58741 -9.96716 -9.53703 -8.90789 -7.86444 -5.20927 -0.51803 0.26334 0.58799 0.93597 1.45484 1.46969 1.56700 1.94656 2.27580 2.47882 2.85850 3.30659 3.36159 3.55305 3.72353 3.82919 3.93350 3.98496 4.00004 4.05106 4.15967 4.19921 4.33414 4.57763 4.65776 4.70264 4.76733 4.79796 4.89102 4.90827 4.97403 4.99495 5.01893 5.02919 5.09958 5.10698 5.26652 5.29989 5.40907 5.42713 5.45708 5.50122 5.61881 6.08069 6.44580 6.55931 7.01052 7.02377 7.69222 8.40893 9.25635 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.003978 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.985654 B = 7036.600606 C = 8051.323876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.012 3.988 3 C -0.153 4.153 4 C -0.135 4.135 5 C 0.022 3.978 6 N -0.454 5.454 7 C -0.008 4.008 8 C 0.591 3.409 9 O -0.587 6.587 10 N -0.593 5.593 11 C 0.122 3.878 12 C 0.132 3.868 13 H 0.135 0.865 14 C -0.125 4.125 15 C 0.099 3.901 16 H 0.117 0.883 17 C 0.190 3.810 18 N -0.615 5.615 19 C -0.231 4.231 20 H 0.094 0.906 21 C -0.070 4.070 22 N -0.957 5.957 23 Si 0.977 3.023 24 H -0.293 1.293 25 H -0.298 1.298 26 H -0.260 1.260 27 C -0.248 4.248 28 S 0.293 5.707 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.025 0.975 43 H -0.010 1.010 44 H 0.244 0.756 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 23.727 1.088 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 C -0.211 4.211 4 C -0.193 4.193 5 C -0.258 4.258 6 N -0.168 5.168 7 C -0.143 4.143 8 C 0.379 3.621 9 O -0.469 6.469 10 N -0.323 5.323 11 C -0.002 4.002 12 C 0.026 3.974 13 H 0.153 0.847 14 C -0.164 4.164 15 C -0.004 4.004 16 H 0.135 0.865 17 C 0.064 3.936 18 N -0.339 5.339 19 C -0.360 4.360 20 H 0.112 0.888 21 C -0.262 4.262 22 N -0.607 5.607 23 Si 0.806 3.194 24 H -0.221 1.221 25 H -0.225 1.225 26 H -0.184 1.184 27 C -0.390 4.390 28 S 0.553 5.447 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.043 0.957 43 H 0.008 0.992 44 H 0.053 0.947 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.159 24.081 1.328 24.892 hybrid contribution 0.979 -2.302 -0.128 2.505 sum -5.180 21.779 1.200 22.419 Atomic orbital electron populations 1.21828 0.91530 1.02360 1.03281 1.19410 0.97218 0.94897 0.87635 1.22065 1.01884 0.92338 1.04784 1.21843 1.00756 1.00170 0.96561 1.27900 1.01478 0.93264 1.03134 1.66964 1.22499 1.13158 1.14218 1.20150 1.03910 0.96014 0.94237 1.17249 0.78109 0.83818 0.82914 1.90720 1.51611 1.79282 1.25314 1.49036 1.48140 1.11536 1.23573 1.23437 0.95221 0.98516 0.83065 1.24208 0.90934 0.87434 0.94857 0.84724 1.24067 0.93299 1.02587 0.96436 1.24253 0.97511 0.79877 0.98726 0.86510 1.21505 0.91595 0.95507 0.85042 1.45495 1.29162 1.52902 1.06334 1.19535 1.13597 1.16271 0.86550 0.88792 1.25683 0.98166 1.01176 1.01200 1.70187 1.19624 1.37541 1.33305 0.85075 0.78149 0.77245 0.78964 1.22064 1.22534 1.18373 1.26899 1.05101 0.99367 1.07681 1.82227 1.43050 1.08659 1.10799 0.92017 0.89427 0.93394 0.91546 0.88521 0.90758 0.94063 0.89215 0.93197 0.89898 0.93700 0.89317 0.88226 0.95691 0.99191 0.94684 0.79350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.45 71.98 0.61 -1.38 16 2 C 0.01 0.20 0.99 -52.93 -0.05 0.15 16 3 C -0.15 -1.49 7.53 71.98 0.54 -0.95 16 4 C -0.13 -2.56 8.44 71.98 0.61 -1.96 16 5 C 0.02 0.50 5.74 88.57 0.51 1.01 16 6 N -0.45 -14.07 7.87 -180.83 -1.42 -15.49 16 7 C -0.01 -0.28 6.63 40.56 0.27 -0.01 16 8 C 0.59 25.04 7.87 86.62 0.68 25.73 16 9 O -0.59 -27.60 17.06 -4.12 -0.07 -27.67 16 10 N -0.59 -24.63 2.95 -767.28 -2.27 -26.89 16 11 C 0.12 4.63 5.00 88.06 0.44 5.07 16 12 C 0.13 5.04 5.63 47.96 0.27 5.31 16 13 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 14 C -0.12 -4.26 6.86 33.59 0.23 -4.03 16 15 C 0.10 4.17 5.19 46.93 0.24 4.41 16 16 H 0.12 4.77 8.05 -2.39 -0.02 4.75 16 17 C 0.19 10.00 4.76 87.16 0.41 10.41 16 18 N -0.61 -31.15 3.02 -643.11 -1.94 -33.09 16 19 C -0.23 -12.70 10.36 84.03 0.87 -11.83 16 20 H 0.09 4.79 7.84 -2.91 -0.02 4.77 16 21 C -0.07 -4.02 5.48 84.86 0.47 -3.56 16 22 N -0.96 -59.94 10.61 21.65 0.23 -59.71 16 23 Si 0.98 46.19 29.56 68.60 2.03 48.22 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 C -0.25 -6.83 10.62 67.12 0.71 -6.12 16 28 S 0.29 5.35 21.28 -56.49 -1.20 4.15 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.63 7.91 -2.39 -0.02 0.61 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.58 7.91 -2.38 -0.02 0.56 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 2.74 7.60 -2.39 -0.02 2.72 16 39 H 0.04 1.98 7.80 -2.39 -0.02 1.97 16 40 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.10 2.78 8.14 -2.39 -0.02 2.77 16 42 H 0.02 1.45 7.39 -2.39 -0.02 1.44 16 43 H -0.01 -0.63 7.76 -2.39 -0.02 -0.65 16 44 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.19 4.90 8.03 -2.91 -0.02 4.88 16 Total: -1.00 -76.91 373.24 3.15 -73.76 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.98 Total: 14.45 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 6.81 Total: 22.27 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -5.40 Total: -135.18 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.07 Total: -27.67 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 5.35 SS G_CDS: -1.20 Total: 4.15 kcal Total: -76.91 3.15 -73.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032683981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.522 kcal (2) G-P(sol) polarization free energy of solvation -76.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds