Wall clock time and date at job start Tue Mar 31 2020 18:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46781 * 2 1 4 4 C 1.52996 * 109.46747 * 239.99892 * 2 1 3 5 5 C 1.50699 * 109.47195 * 120.00069 * 2 1 3 6 6 N 1.29425 * 124.80879 * 59.99977 * 5 2 1 7 7 C 1.30938 * 117.36816 * 180.02562 * 6 5 2 8 8 C 1.35662 * 114.18939 * 359.97438 * 7 6 5 9 9 C 1.46690 * 126.12841 * 180.02562 * 8 7 6 10 10 O 1.21678 * 119.99988 * 354.60799 * 9 8 7 11 11 N 1.34771 * 119.99644 * 174.60755 * 9 8 7 12 12 C 1.47875 * 126.94840 * 4.53849 * 11 9 8 13 13 C 1.55964 * 105.13313 * 180.63295 * 12 11 9 14 14 H 1.08997 * 116.54696 * 160.09660 * 13 12 11 15 15 C 1.58981 * 98.68721 * 34.64151 * 13 12 11 16 16 C 1.49294 * 126.94463 * 184.85908 * 11 9 8 17 17 H 1.09003 * 116.14748 * 16.67360 * 16 11 9 18 18 C 1.56021 * 104.08980 * 247.53862 * 16 11 9 19 19 N 1.47872 * 105.10299 * 288.76138 * 18 16 11 20 20 C 1.36927 * 126.94575 * 182.02448 * 19 18 16 21 21 H 1.07999 * 120.00088 * 179.97438 * 20 19 18 22 22 C 1.38815 * 120.00065 * 359.97438 * 20 19 18 23 23 N 1.31616 * 119.99809 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47198 * 89.99691 * 24 22 20 26 26 H 1.48504 * 109.47331 * 210.00051 * 24 22 20 27 27 H 1.48504 * 109.47072 * 329.99795 * 24 22 20 28 28 S 1.70959 * 124.80038 * 239.99928 * 5 2 1 29 29 H 1.09004 * 109.47331 * 299.99704 * 1 2 3 30 30 H 1.08996 * 109.47438 * 59.99956 * 1 2 3 31 31 H 1.09003 * 109.46761 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46731 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46670 * 299.99650 * 3 2 1 34 34 H 1.08996 * 109.47099 * 60.00338 * 3 2 1 35 35 H 1.08996 * 109.47449 * 299.99787 * 4 2 1 36 36 H 1.09005 * 109.47402 * 60.00325 * 4 2 1 37 37 H 1.09005 * 109.47152 * 179.97438 * 4 2 1 38 38 H 1.07999 * 122.90449 * 179.97438 * 7 6 5 39 39 H 1.08991 * 110.31625 * 300.93342 * 12 11 9 40 40 H 1.09001 * 110.31001 * 63.11754 * 12 11 9 41 41 H 1.08998 * 112.07849 * 190.73614 * 15 13 12 42 42 H 1.09003 * 113.29922 * 62.75152 * 15 13 12 43 43 H 1.08995 * 110.31794 * 47.67259 * 18 16 11 44 44 H 1.08998 * 110.31417 * 169.75885 * 18 16 11 45 45 H 0.96999 * 119.99828 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.7777 -1.9442 1.5269 7 6 2.2900 -2.4149 2.6362 8 6 3.0328 -1.5166 3.3304 9 6 3.7236 -1.7633 4.6007 10 8 3.5787 -2.8259 5.1757 11 7 4.5187 -0.8131 5.1310 12 6 4.7307 0.5571 4.6168 13 6 5.7508 1.2080 5.6008 14 1 6.2943 2.0785 5.2337 15 6 6.6198 -0.0812 5.9331 16 6 5.3686 -0.9332 6.3525 17 1 5.5652 -1.9464 6.7032 18 6 4.6992 0.0340 7.3775 19 7 4.9956 1.3929 6.8753 20 6 4.6480 2.5808 7.4609 21 1 4.9244 3.5145 6.9938 22 6 3.9404 2.5850 8.6552 23 7 3.6032 1.4471 9.2243 24 14 3.4656 4.2055 9.4539 25 1 2.1353 4.6338 8.9518 26 1 3.4063 4.0325 10.9276 27 1 4.4778 5.2386 9.1172 28 16 3.0194 -0.0005 2.4323 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 2.1347 -3.4303 2.9697 39 1 5.1226 0.5234 3.6003 40 1 3.7979 1.1204 4.6452 41 1 7.3035 0.0889 6.7648 42 1 7.1296 -0.4936 5.0625 43 1 3.6224 -0.1320 7.4071 44 1 5.1307 -0.1072 8.3685 45 1 3.1090 1.4501 10.0590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032805004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:47 Heat of formation + Delta-G solvation = 60.084368 kcal Electronic energy + Delta-G solvation = -27252.590160 eV Core-core repulsion = 23591.494751 eV Total energy + Delta-G solvation = -3661.095409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26256 -39.80889 -37.83488 -36.68360 -33.74141 -31.76638 -30.13248 -28.96481 -28.60277 -27.70421 -27.52255 -25.95726 -25.24687 -23.63444 -22.05508 -20.89978 -20.06219 -19.44429 -18.21258 -18.03387 -16.93052 -16.12496 -16.05362 -15.55967 -15.12415 -14.79628 -14.54405 -14.47288 -14.04375 -13.80070 -13.70462 -13.42220 -13.15714 -12.64681 -12.44772 -12.27620 -12.04098 -11.95196 -11.86250 -11.77240 -11.44587 -11.35133 -11.29595 -11.21574 -11.07817 -10.91005 -10.89526 -10.66107 -10.35522 -10.13966 -9.86770 -9.71537 -9.45287 -9.36092 -8.90615 -8.77008 -8.09915 -7.00929 -5.82905 -3.18245 0.34705 1.25473 1.70227 2.57373 3.22405 3.33776 3.38331 3.41279 3.45349 3.85253 4.36088 4.48904 4.61551 4.68292 4.79844 5.04582 5.08291 5.12593 5.26878 5.28241 5.34750 5.38830 5.47357 5.47822 5.52497 5.58262 5.61037 5.67421 5.68543 5.75828 5.80868 5.97741 6.02225 6.03015 6.15821 6.20064 6.31521 6.35994 6.49214 6.58851 7.35603 7.41726 7.64934 7.66469 7.91876 8.03106 8.40377 9.03376 9.64403 10.32436 11.29063 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.003627 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.514422 B = 7718.689632 C = 8632.861609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.009 3.991 3 C -0.157 4.157 4 C -0.133 4.133 5 C 0.039 3.961 6 N -0.478 5.478 7 C 0.108 3.892 8 C -0.284 4.284 9 C 0.605 3.395 10 O -0.541 6.541 11 N -0.600 5.600 12 C 0.070 3.930 13 C 0.149 3.851 14 H 0.110 0.890 15 C -0.155 4.155 16 C 0.101 3.899 17 H 0.115 0.885 18 C 0.173 3.827 19 N -0.593 5.593 20 C -0.236 4.236 21 H 0.082 0.918 22 C -0.003 4.003 23 N -0.917 5.917 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 S 0.199 5.801 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.184 0.816 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 -1.343 -19.343 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.006 3.994 3 C -0.215 4.215 4 C -0.192 4.192 5 C -0.236 4.236 6 N -0.192 5.192 7 C -0.049 4.049 8 C -0.408 4.408 9 C 0.392 3.608 10 O -0.421 6.421 11 N -0.333 5.333 12 C -0.057 4.057 13 C 0.039 3.961 14 H 0.128 0.872 15 C -0.194 4.194 16 C -0.001 4.001 17 H 0.133 0.867 18 C 0.048 3.952 19 N -0.317 5.317 20 C -0.363 4.363 21 H 0.100 0.900 22 C -0.201 4.201 23 N -0.563 5.563 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 S 0.458 5.542 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.201 0.799 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.053 -1.128 -19.025 19.059 hybrid contribution -0.643 -0.165 0.830 1.062 sum -0.590 -1.293 -18.195 18.251 Atomic orbital electron populations 1.21844 0.92215 1.03106 1.02172 1.19249 0.96681 0.94001 0.89504 1.22057 1.01808 0.94196 1.03408 1.21832 1.01152 1.01032 0.95174 1.27726 1.00242 0.94076 1.01537 1.66111 1.23631 1.11968 1.17476 1.22066 0.93014 1.01112 0.88750 1.25901 1.12289 0.98665 1.03978 1.16307 0.78567 0.83380 0.82496 1.90800 1.64055 1.25449 1.61797 1.49067 1.43277 1.12712 1.28212 1.23493 1.02367 0.82646 0.97194 1.23384 0.90523 0.94770 0.87442 0.87237 1.24516 0.96136 0.97605 1.01177 1.24404 0.89958 0.99974 0.85760 0.86701 1.21953 0.98288 0.81604 0.93325 1.45200 1.63169 1.02397 1.20904 1.19038 1.30407 0.83588 1.03312 0.90016 1.24837 1.00290 0.97166 0.97763 1.69912 1.43172 1.23663 1.19588 0.86107 0.78394 0.82485 0.78652 1.21555 1.21618 1.20545 1.84337 1.44359 1.12480 1.13004 0.92365 0.91615 0.91433 0.91702 0.90601 0.91552 0.91443 0.91639 0.92499 0.79941 0.92141 0.90651 0.89537 0.91315 0.93305 0.92294 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.45 37.16 0.31 -0.87 16 2 C 0.01 0.09 0.99 -155.66 -0.15 -0.07 16 3 C -0.16 -1.21 7.53 37.16 0.28 -0.93 16 4 C -0.13 -1.09 8.45 37.16 0.31 -0.77 16 5 C 0.04 0.48 5.78 -13.29 -0.08 0.40 16 6 N -0.48 -6.83 10.49 -11.50 -0.12 -6.95 16 7 C 0.11 1.66 11.09 -18.85 -0.21 1.45 16 8 C -0.28 -4.68 6.41 -37.09 -0.24 -4.92 16 9 C 0.61 11.75 7.85 -12.85 -0.10 11.65 16 10 O -0.54 -11.92 17.24 5.21 0.09 -11.83 16 11 N -0.60 -11.28 2.94 -158.33 -0.47 -11.74 16 12 C 0.07 1.18 4.61 -1.70 -0.01 1.17 16 13 C 0.15 2.66 5.55 -61.47 -0.34 2.32 16 14 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 15 C -0.15 -2.52 6.93 -21.19 -0.15 -2.67 16 16 C 0.10 1.94 5.17 -62.55 -0.32 1.61 16 17 H 0.12 2.13 8.08 -51.93 -0.42 1.71 16 18 C 0.17 4.11 4.79 -1.67 -0.01 4.10 16 19 N -0.59 -13.92 3.06 -155.17 -0.48 -14.40 16 20 C -0.24 -6.11 10.37 -15.06 -0.16 -6.27 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 22 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 23 N -0.92 -26.38 10.56 55.49 0.59 -25.80 16 24 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 S 0.20 2.63 17.31 -107.50 -1.86 0.77 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.55 7.92 -51.93 -0.41 0.13 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.18 2.63 8.06 -52.49 -0.42 2.21 16 39 H 0.06 0.85 6.82 -51.93 -0.35 0.50 16 40 H 0.08 1.40 7.38 -51.93 -0.38 1.02 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.05 1.35 7.68 -51.93 -0.40 0.95 16 44 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -31.58 370.82 -9.59 -41.17 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.96 Total: 0.86 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.95 Total: 6.03 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.48 Total: -58.89 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.86 Total: 0.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.58 -9.59 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032805004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.259 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds