Wall clock time and date at job start Tue Mar 31 2020 18:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46781 * 2 1 4 4 C 1.52996 * 109.46747 * 239.99892 * 2 1 3 5 5 C 1.50699 * 109.47195 * 120.00069 * 2 1 3 6 6 N 1.29425 * 124.80879 * 59.99977 * 5 2 1 7 7 C 1.30938 * 117.36816 * 180.02562 * 6 5 2 8 8 C 1.35662 * 114.18939 * 359.97438 * 7 6 5 9 9 C 1.46690 * 126.12841 * 180.02562 * 8 7 6 10 10 O 1.21678 * 119.99988 * 354.60799 * 9 8 7 11 11 N 1.34771 * 119.99644 * 174.60755 * 9 8 7 12 12 C 1.47875 * 126.94840 * 4.53849 * 11 9 8 13 13 C 1.55964 * 105.13313 * 180.63295 * 12 11 9 14 14 H 1.08997 * 116.54696 * 160.09660 * 13 12 11 15 15 C 1.58981 * 98.68721 * 34.64151 * 13 12 11 16 16 C 1.49294 * 126.94463 * 184.85908 * 11 9 8 17 17 H 1.09003 * 116.14748 * 16.67360 * 16 11 9 18 18 C 1.56021 * 104.08980 * 247.53862 * 16 11 9 19 19 N 1.47872 * 105.10299 * 288.76138 * 18 16 11 20 20 C 1.36927 * 126.94575 * 182.02448 * 19 18 16 21 21 H 1.07999 * 120.00088 * 179.97438 * 20 19 18 22 22 C 1.38815 * 120.00065 * 359.97438 * 20 19 18 23 23 N 1.31616 * 119.99809 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47198 * 89.99691 * 24 22 20 26 26 H 1.48504 * 109.47331 * 210.00051 * 24 22 20 27 27 H 1.48504 * 109.47072 * 329.99795 * 24 22 20 28 28 S 1.70959 * 124.80038 * 239.99928 * 5 2 1 29 29 H 1.09004 * 109.47331 * 299.99704 * 1 2 3 30 30 H 1.08996 * 109.47438 * 59.99956 * 1 2 3 31 31 H 1.09003 * 109.46761 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46731 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46670 * 299.99650 * 3 2 1 34 34 H 1.08996 * 109.47099 * 60.00338 * 3 2 1 35 35 H 1.08996 * 109.47449 * 299.99787 * 4 2 1 36 36 H 1.09005 * 109.47402 * 60.00325 * 4 2 1 37 37 H 1.09005 * 109.47152 * 179.97438 * 4 2 1 38 38 H 1.07999 * 122.90449 * 179.97438 * 7 6 5 39 39 H 1.08991 * 110.31625 * 300.93342 * 12 11 9 40 40 H 1.09001 * 110.31001 * 63.11754 * 12 11 9 41 41 H 1.08998 * 112.07849 * 190.73614 * 15 13 12 42 42 H 1.09003 * 113.29922 * 62.75152 * 15 13 12 43 43 H 1.08995 * 110.31794 * 47.67259 * 18 16 11 44 44 H 1.08998 * 110.31417 * 169.75885 * 18 16 11 45 45 H 0.96999 * 119.99828 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.7777 -1.9442 1.5269 7 6 2.2900 -2.4149 2.6362 8 6 3.0328 -1.5166 3.3304 9 6 3.7236 -1.7633 4.6007 10 8 3.5787 -2.8259 5.1757 11 7 4.5187 -0.8131 5.1310 12 6 4.7307 0.5571 4.6168 13 6 5.7508 1.2080 5.6008 14 1 6.2943 2.0785 5.2337 15 6 6.6198 -0.0812 5.9331 16 6 5.3686 -0.9332 6.3525 17 1 5.5652 -1.9464 6.7032 18 6 4.6992 0.0340 7.3775 19 7 4.9956 1.3929 6.8753 20 6 4.6480 2.5808 7.4609 21 1 4.9244 3.5145 6.9938 22 6 3.9404 2.5850 8.6552 23 7 3.6032 1.4471 9.2243 24 14 3.4656 4.2055 9.4539 25 1 2.1353 4.6338 8.9518 26 1 3.4063 4.0325 10.9276 27 1 4.4778 5.2386 9.1172 28 16 3.0194 -0.0005 2.4323 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 2.1347 -3.4303 2.9697 39 1 5.1226 0.5234 3.6003 40 1 3.7979 1.1204 4.6452 41 1 7.3035 0.0889 6.7648 42 1 7.1296 -0.4936 5.0625 43 1 3.6224 -0.1320 7.4071 44 1 5.1307 -0.1072 8.3685 45 1 3.1090 1.4501 10.0590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032805004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:46 Heat of formation + Delta-G solvation = 40.836290 kcal Electronic energy + Delta-G solvation = -27253.424820 eV Core-core repulsion = 23591.494751 eV Total energy + Delta-G solvation = -3661.930069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70995 -41.00752 -39.30922 -37.56148 -35.55121 -33.49110 -31.55610 -30.45804 -30.24362 -28.32693 -28.17454 -27.14994 -26.95340 -25.26431 -23.45532 -21.93112 -21.57602 -20.94558 -19.72611 -19.07858 -18.55318 -17.62088 -17.46820 -16.98673 -16.52256 -15.96617 -15.80707 -15.63582 -15.46833 -15.09639 -14.90009 -14.60100 -14.45961 -13.93286 -13.67516 -13.49089 -13.21605 -13.12882 -13.07807 -12.90556 -12.72756 -12.68746 -12.60373 -12.39996 -12.35997 -12.19632 -12.06492 -11.98852 -11.93677 -11.91616 -11.58476 -11.34302 -10.76710 -10.59894 -10.50964 -10.08855 -9.59853 -8.95170 -7.86065 -5.22643 -0.81560 0.13691 0.57772 1.34459 1.47414 1.48547 1.57428 1.78084 2.06808 2.47516 2.90795 3.26165 3.34044 3.50837 3.69595 3.73859 3.79559 3.94200 3.96397 3.97818 4.13755 4.18204 4.31386 4.39625 4.56121 4.70453 4.71672 4.75390 4.80267 4.85665 4.90977 4.97001 4.97890 4.98467 5.06509 5.08307 5.19100 5.25479 5.36101 5.39799 5.42585 5.47297 5.63695 6.06883 6.40833 6.56614 6.90358 7.00446 7.68733 8.38469 9.25234 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.003627 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.514422 B = 7718.689632 C = 8632.861609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.005 3.995 3 C -0.158 4.158 4 C -0.130 4.130 5 C 0.052 3.948 6 N -0.494 5.494 7 C 0.116 3.884 8 C -0.324 4.324 9 C 0.601 3.399 10 O -0.581 6.581 11 N -0.604 5.604 12 C 0.077 3.923 13 C 0.144 3.856 14 H 0.144 0.856 15 C -0.129 4.129 16 C 0.102 3.898 17 H 0.117 0.883 18 C 0.187 3.813 19 N -0.613 5.613 20 C -0.231 4.231 21 H 0.100 0.900 22 C -0.070 4.070 23 N -0.957 5.957 24 Si 0.977 3.023 25 H -0.291 1.291 26 H -0.303 1.303 27 H -0.259 1.259 28 S 0.234 5.766 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.183 0.817 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.106 0.894 43 H -0.006 1.006 44 H 0.024 0.976 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 0.803 -23.090 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.001 3.999 3 C -0.216 4.216 4 C -0.189 4.189 5 C -0.221 4.221 6 N -0.208 5.208 7 C -0.043 4.043 8 C -0.448 4.448 9 C 0.390 3.610 10 O -0.464 6.464 11 N -0.336 5.336 12 C -0.048 4.048 13 C 0.037 3.963 14 H 0.162 0.838 15 C -0.169 4.169 16 C -0.001 4.001 17 H 0.134 0.866 18 C 0.061 3.939 19 N -0.337 5.337 20 C -0.359 4.359 21 H 0.118 0.882 22 C -0.263 4.263 23 N -0.606 5.606 24 Si 0.806 3.194 25 H -0.219 1.219 26 H -0.230 1.230 27 H -0.183 1.183 28 S 0.494 5.506 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.200 0.800 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.013 0.987 44 H 0.042 0.958 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.241 1.064 -22.832 22.890 hybrid contribution -1.061 -0.830 1.845 2.284 sum 0.180 0.234 -20.987 20.989 Atomic orbital electron populations 1.21859 0.91678 1.02564 1.03136 1.19551 0.97064 0.94912 0.88369 1.22109 1.02180 0.92827 1.04441 1.21832 1.01221 1.00422 0.95400 1.28502 0.98382 0.93473 1.01791 1.66203 1.24408 1.12934 1.17240 1.22186 0.92148 1.01190 0.88817 1.25667 1.14074 1.01172 1.03853 1.16700 0.78165 0.82898 0.83235 1.90759 1.65300 1.27054 1.63264 1.49127 1.43159 1.13469 1.27859 1.23417 1.01409 0.81195 0.98779 1.23821 0.90560 0.96790 0.85170 0.83815 1.24438 0.94545 0.95334 1.02549 1.24281 0.91366 0.99482 0.84960 0.86558 1.21524 0.95145 0.83740 0.93498 1.45439 1.63810 1.01434 1.22978 1.19557 1.28465 0.85131 1.02793 0.88232 1.25680 1.01519 0.99975 0.99081 1.70162 1.44915 1.25846 1.19712 0.85092 0.78187 0.79401 0.76737 1.21852 1.22974 1.18314 1.84022 1.44296 1.10219 1.12014 0.93262 0.88830 0.92754 0.91180 0.88023 0.92156 0.92790 0.88967 0.92388 0.80009 0.88184 0.92423 0.89393 0.87530 0.98748 0.95836 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.45 71.98 0.61 -1.40 16 2 C 0.00 0.08 0.99 -52.93 -0.05 0.02 16 3 C -0.16 -1.83 7.53 71.98 0.54 -1.29 16 4 C -0.13 -1.70 8.45 71.98 0.61 -1.09 16 5 C 0.05 1.21 5.78 88.46 0.51 1.72 16 6 N -0.49 -13.67 10.49 -190.30 -2.00 -15.66 16 7 C 0.12 3.56 11.09 84.23 0.93 4.49 16 8 C -0.32 -10.61 6.41 23.88 0.15 -10.45 16 9 C 0.60 23.78 7.85 86.45 0.68 24.46 16 10 O -0.58 -26.72 17.24 -4.28 -0.07 -26.80 16 11 N -0.60 -22.61 2.94 -773.06 -2.27 -24.88 16 12 C 0.08 2.45 4.61 87.14 0.40 2.85 16 13 C 0.14 4.78 5.55 47.63 0.26 5.04 16 14 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 15 C -0.13 -3.89 6.93 34.18 0.24 -3.65 16 16 C 0.10 3.94 5.17 46.93 0.24 4.18 16 17 H 0.12 4.44 8.08 -2.39 -0.02 4.42 16 18 C 0.19 9.31 4.79 87.16 0.42 9.73 16 19 N -0.61 -28.80 3.06 -644.85 -1.98 -30.77 16 20 C -0.23 -11.93 10.37 84.04 0.87 -11.06 16 21 H 0.10 4.68 7.83 -2.91 -0.02 4.66 16 22 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 23 N -0.96 -58.08 10.56 21.65 0.23 -57.85 16 24 Si 0.98 44.55 29.55 68.60 2.03 46.58 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 28 S 0.23 5.74 17.31 -56.49 -0.98 4.76 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.76 7.92 -2.39 -0.02 0.74 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.79 7.92 -2.39 -0.02 0.78 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.18 5.43 8.06 -2.91 -0.02 5.41 16 39 H 0.10 2.42 6.82 -2.39 -0.02 2.40 16 40 H 0.06 2.07 7.38 -2.39 -0.02 2.05 16 41 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 43 H -0.01 -0.34 7.68 -2.39 -0.02 -0.36 16 44 H 0.02 1.31 7.46 -2.39 -0.02 1.29 16 45 H 0.24 14.63 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -73.68 370.82 2.83 -70.85 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.98 Total: 13.64 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 6.89 Total: 20.15 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -6.01 Total: -129.17 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.07 Total: -26.80 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -0.98 Total: 4.76 kcal Total: -73.68 2.83 -70.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032805004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.683 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds