Wall clock time and date at job start Tue Mar 31 2020 18:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47034 * 2 1 4 4 C 1.52999 * 109.47097 * 119.99913 * 2 1 3 5 5 C 1.50693 * 109.47461 * 64.99997 * 4 2 1 6 6 N 1.29432 * 124.80470 * 90.02410 * 5 4 2 7 7 C 1.30941 * 117.36143 * 180.02562 * 6 5 4 8 8 C 1.35661 * 114.19369 * 359.97438 * 7 6 5 9 9 C 1.46684 * 126.12783 * 180.02562 * 8 7 6 10 10 O 1.21689 * 120.00156 * 5.22151 * 9 8 7 11 11 N 1.34772 * 120.00049 * 185.21914 * 9 8 7 12 12 C 1.47870 * 126.94147 * 354.79640 * 11 9 8 13 13 C 1.56022 * 105.10209 * 182.02341 * 12 11 9 14 14 H 1.09008 * 116.24666 * 158.83810 * 13 12 11 15 15 C 1.57084 * 99.60862 * 32.80780 * 13 12 11 16 16 C 1.49293 * 126.94658 * 174.82594 * 11 9 8 17 17 H 1.09001 * 116.15233 * 15.81780 * 16 11 9 18 18 C 1.56022 * 104.08828 * 246.67456 * 16 11 9 19 19 N 1.47862 * 105.19307 * 288.71507 * 18 16 11 20 20 C 1.36942 * 126.94450 * 182.05864 * 19 18 16 21 21 H 1.08004 * 119.99931 * 185.11551 * 20 19 18 22 22 C 1.38807 * 119.99801 * 5.10766 * 20 19 18 23 23 N 1.31616 * 120.00300 * 5.25336 * 22 20 19 24 24 Si 1.86801 * 120.00076 * 185.25318 * 22 20 19 25 25 H 1.48501 * 109.47217 * 84.99964 * 24 22 20 26 26 H 1.48497 * 109.47359 * 205.00121 * 24 22 20 27 27 H 1.48507 * 109.46990 * 325.00191 * 24 22 20 28 28 S 1.70955 * 124.80422 * 270.34499 * 5 4 2 29 29 H 1.09006 * 109.47202 * 60.00464 * 1 2 3 30 30 H 1.09005 * 109.47445 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47518 * 300.00209 * 1 2 3 32 32 H 1.08998 * 109.47175 * 240.00109 * 2 1 3 33 33 H 1.09000 * 109.46769 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46747 * 299.99815 * 3 2 1 35 35 H 1.08996 * 109.47447 * 59.99380 * 3 2 1 36 36 H 1.09002 * 109.46707 * 304.99928 * 4 2 1 37 37 H 1.08998 * 109.47257 * 185.00548 * 4 2 1 38 38 H 1.08000 * 122.89850 * 180.02562 * 7 6 5 39 39 H 1.08998 * 110.31669 * 300.92944 * 12 11 9 40 40 H 1.09003 * 110.31797 * 63.01889 * 12 11 9 41 41 H 1.08995 * 112.36637 * 191.71301 * 15 13 12 42 42 H 1.09003 * 112.36658 * 64.27398 * 15 13 12 43 43 H 1.08999 * 110.31484 * 47.67982 * 18 16 11 44 44 H 1.09005 * 110.31216 * 169.75832 * 18 16 11 45 45 H 0.96998 * 120.00291 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 -2.1732 1.1890 6 7 2.3542 -3.1136 0.6572 7 6 1.8655 -4.3281 0.6850 8 6 0.6519 -4.4255 1.2833 9 6 -0.1301 -5.6542 1.4580 10 8 0.3424 -6.7275 1.1331 11 7 -1.3718 -5.5944 1.9784 12 6 -2.0516 -4.3983 2.5206 13 6 -3.4338 -4.9122 3.0301 14 1 -3.9363 -4.2900 3.7708 15 6 -3.0229 -6.3568 3.4906 16 6 -2.3388 -6.7224 2.1246 17 1 -1.9245 -7.7259 2.0280 18 6 -3.4986 -6.3576 1.1468 19 7 -4.1942 -5.2164 1.7793 20 6 -5.3079 -4.5703 1.3129 21 1 -5.6772 -3.6934 1.8239 22 6 -5.9621 -5.0424 0.1833 23 7 -5.5754 -6.1678 -0.3791 24 14 -7.3913 -4.0805 -0.5389 25 1 -6.8709 -3.0320 -1.4527 26 1 -8.2761 -5.0020 -1.2957 27 1 -8.1630 -3.4425 0.5579 28 16 0.1800 -2.8103 1.8064 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.6053 -0.2616 2.1369 37 1 3.1262 -0.6442 1.2952 38 1 2.3843 -5.1788 0.2684 39 1 -1.4767 -3.9777 3.3456 40 1 -2.1887 -3.6531 1.7370 41 1 -3.8872 -6.9859 3.7031 42 1 -2.3142 -6.3423 4.3187 43 1 -3.0975 -6.0656 0.1762 44 1 -4.1795 -7.2015 1.0357 45 1 -6.0327 -6.4979 -1.1682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032814500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:54 Heat of formation + Delta-G solvation = 56.676841 kcal Electronic energy + Delta-G solvation = -27154.624525 eV Core-core repulsion = 23493.381354 eV Total energy + Delta-G solvation = -3661.243171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28473 -39.72218 -37.78698 -36.54870 -33.74201 -31.88584 -30.91448 -29.25750 -28.72635 -27.93646 -27.40154 -25.33578 -24.55146 -23.51576 -21.99308 -20.64699 -20.05362 -19.52137 -18.43476 -18.27059 -17.00779 -16.20715 -16.10140 -15.54553 -15.29209 -15.04168 -14.62506 -14.29671 -14.23567 -13.94292 -13.61973 -13.42571 -13.10906 -12.77411 -12.53701 -12.32920 -12.15114 -12.02272 -11.79374 -11.56480 -11.36235 -11.32382 -11.18166 -11.12630 -10.95044 -10.93099 -10.87882 -10.68383 -10.40438 -10.15726 -9.88656 -9.72245 -9.50053 -9.35837 -8.87700 -8.77808 -8.12435 -7.00456 -5.82046 -3.19273 0.31664 1.23463 1.66614 2.54508 3.18614 3.33517 3.38109 3.40891 3.43997 3.97327 4.35631 4.57388 4.61115 4.68818 4.78793 5.04594 5.06676 5.07167 5.26085 5.29449 5.34055 5.38328 5.44247 5.47760 5.50353 5.51717 5.64300 5.68770 5.71842 5.74742 5.87908 6.01133 6.05213 6.08462 6.13695 6.18235 6.31048 6.36907 6.49224 6.57996 7.31443 7.41539 7.62492 7.64593 7.89384 8.03305 8.37202 9.02581 9.64067 10.32359 11.28333 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.004040 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.883648 B = 6928.414465 C = 8532.822689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.040 4.040 5 C 0.033 3.967 6 N -0.480 5.480 7 C 0.108 3.892 8 C -0.281 4.281 9 C 0.606 3.394 10 O -0.542 6.542 11 N -0.601 5.601 12 C 0.071 3.929 13 C 0.146 3.854 14 H 0.110 0.890 15 C -0.150 4.150 16 C 0.102 3.898 17 H 0.118 0.882 18 C 0.168 3.832 19 N -0.594 5.594 20 C -0.235 4.235 21 H 0.081 0.919 22 C -0.003 4.003 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 S 0.197 5.803 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.185 0.815 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.659 11.088 6.672 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.081 4.081 5 C -0.241 4.241 6 N -0.194 5.194 7 C -0.049 4.049 8 C -0.406 4.406 9 C 0.393 3.607 10 O -0.422 6.422 11 N -0.333 5.333 12 C -0.056 4.056 13 C 0.037 3.963 14 H 0.128 0.872 15 C -0.190 4.190 16 C 0.000 4.000 17 H 0.136 0.864 18 C 0.043 3.957 19 N -0.318 5.318 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.200 4.200 23 N -0.563 5.563 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.206 1.206 28 S 0.455 5.545 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.201 0.799 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.090 0.910 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.404 11.114 6.535 17.891 hybrid contribution -0.206 -0.262 -1.021 1.074 sum 12.197 10.852 5.514 17.232 Atomic orbital electron populations 1.22035 0.94640 1.02584 1.02434 1.21107 0.96394 0.96160 0.97469 1.21815 1.01027 0.95180 1.02182 1.20414 1.02799 0.85414 0.99480 1.27636 0.96090 1.00571 0.99833 1.66222 1.34316 0.99554 1.19333 1.22080 0.91553 0.94611 0.96692 1.25863 1.02334 0.97958 1.14397 1.16305 0.79916 0.86503 0.77987 1.90799 1.69988 1.28879 1.52569 1.49093 1.12859 1.12321 1.59058 1.23497 0.96230 0.87869 0.97956 1.23165 0.88811 0.94078 0.90255 0.87203 1.24177 1.00158 0.99197 0.95458 1.24432 0.87831 0.90269 0.97498 0.86417 1.22023 0.89563 0.91782 0.92315 1.45285 1.29678 1.36350 1.20508 1.19026 1.01440 1.07135 1.08631 0.90084 1.24827 0.99333 0.97225 0.98656 1.69888 1.42875 1.20514 1.23046 0.86141 0.81702 0.78858 0.79039 1.21539 1.21633 1.20586 1.84341 1.18435 0.98550 1.53184 0.92015 0.92315 0.92173 0.90480 0.92468 0.92247 0.92405 0.89529 0.88781 0.79856 0.92352 0.90442 0.89346 0.91508 0.94453 0.91007 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.89 37.15 0.33 -1.20 16 2 C -0.09 -0.80 2.91 -90.62 -0.26 -1.06 16 3 C -0.14 -0.98 9.19 37.16 0.34 -0.63 16 4 C -0.04 -0.36 5.27 -27.89 -0.15 -0.51 16 5 C 0.03 0.41 6.02 -13.29 -0.08 0.33 16 6 N -0.48 -6.94 10.51 -11.50 -0.12 -7.06 16 7 C 0.11 1.67 11.09 -18.85 -0.21 1.46 16 8 C -0.28 -4.60 6.41 -37.09 -0.24 -4.84 16 9 C 0.61 11.59 7.85 -12.85 -0.10 11.49 16 10 O -0.54 -11.71 17.21 5.20 0.09 -11.62 16 11 N -0.60 -11.14 2.95 -158.29 -0.47 -11.61 16 12 C 0.07 1.19 4.59 -1.67 -0.01 1.18 16 13 C 0.15 2.60 5.54 -62.42 -0.35 2.26 16 14 H 0.11 1.72 8.14 -51.92 -0.42 1.29 16 15 C -0.15 -2.46 6.81 -22.30 -0.15 -2.62 16 16 C 0.10 1.93 5.25 -62.55 -0.33 1.61 16 17 H 0.12 2.17 8.03 -51.93 -0.42 1.75 16 18 C 0.17 3.94 4.83 -1.68 -0.01 3.93 16 19 N -0.59 -13.83 3.03 -156.17 -0.47 -14.30 16 20 C -0.23 -6.05 10.37 -15.06 -0.16 -6.20 16 21 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 22 C 0.00 -0.09 5.47 -17.43 -0.10 -0.18 16 23 N -0.92 -26.12 10.63 55.49 0.59 -25.53 16 24 Si 0.91 21.24 29.56 -169.99 -5.02 16.22 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 S 0.20 2.57 17.35 -107.50 -1.87 0.70 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.68 6.11 -51.93 -0.32 0.36 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.18 2.65 8.06 -52.49 -0.42 2.22 16 39 H 0.06 0.81 7.17 -51.93 -0.37 0.44 16 40 H 0.08 1.40 7.04 -51.93 -0.37 1.04 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.04 1.01 8.02 -51.93 -0.42 0.59 16 44 H 0.07 1.86 7.06 -51.93 -0.37 1.49 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -31.23 370.26 -10.03 -41.26 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.87 Total: 1.35 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.46 Total: 5.00 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.47 Total: -58.50 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.87 Total: 0.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.23 -10.03 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032814500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.937 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds