Wall clock time and date at job start Tue Mar 31 2020 18:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47034 * 2 1 4 4 C 1.52999 * 109.47097 * 119.99913 * 2 1 3 5 5 C 1.50693 * 109.47461 * 64.99997 * 4 2 1 6 6 N 1.29432 * 124.80470 * 90.02410 * 5 4 2 7 7 C 1.30941 * 117.36143 * 180.02562 * 6 5 4 8 8 C 1.35661 * 114.19369 * 359.97438 * 7 6 5 9 9 C 1.46684 * 126.12783 * 180.02562 * 8 7 6 10 10 O 1.21689 * 120.00156 * 5.22151 * 9 8 7 11 11 N 1.34772 * 120.00049 * 185.21914 * 9 8 7 12 12 C 1.47870 * 126.94147 * 354.79640 * 11 9 8 13 13 C 1.56022 * 105.10209 * 182.02341 * 12 11 9 14 14 H 1.09008 * 116.24666 * 158.83810 * 13 12 11 15 15 C 1.57084 * 99.60862 * 32.80780 * 13 12 11 16 16 C 1.49293 * 126.94658 * 174.82594 * 11 9 8 17 17 H 1.09001 * 116.15233 * 15.81780 * 16 11 9 18 18 C 1.56022 * 104.08828 * 246.67456 * 16 11 9 19 19 N 1.47862 * 105.19307 * 288.71507 * 18 16 11 20 20 C 1.36942 * 126.94450 * 182.05864 * 19 18 16 21 21 H 1.08004 * 119.99931 * 185.11551 * 20 19 18 22 22 C 1.38807 * 119.99801 * 5.10766 * 20 19 18 23 23 N 1.31616 * 120.00300 * 5.25336 * 22 20 19 24 24 Si 1.86801 * 120.00076 * 185.25318 * 22 20 19 25 25 H 1.48501 * 109.47217 * 84.99964 * 24 22 20 26 26 H 1.48497 * 109.47359 * 205.00121 * 24 22 20 27 27 H 1.48507 * 109.46990 * 325.00191 * 24 22 20 28 28 S 1.70955 * 124.80422 * 270.34499 * 5 4 2 29 29 H 1.09006 * 109.47202 * 60.00464 * 1 2 3 30 30 H 1.09005 * 109.47445 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47518 * 300.00209 * 1 2 3 32 32 H 1.08998 * 109.47175 * 240.00109 * 2 1 3 33 33 H 1.09000 * 109.46769 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46747 * 299.99815 * 3 2 1 35 35 H 1.08996 * 109.47447 * 59.99380 * 3 2 1 36 36 H 1.09002 * 109.46707 * 304.99928 * 4 2 1 37 37 H 1.08998 * 109.47257 * 185.00548 * 4 2 1 38 38 H 1.08000 * 122.89850 * 180.02562 * 7 6 5 39 39 H 1.08998 * 110.31669 * 300.92944 * 12 11 9 40 40 H 1.09003 * 110.31797 * 63.01889 * 12 11 9 41 41 H 1.08995 * 112.36637 * 191.71301 * 15 13 12 42 42 H 1.09003 * 112.36658 * 64.27398 * 15 13 12 43 43 H 1.08999 * 110.31484 * 47.67982 * 18 16 11 44 44 H 1.09005 * 110.31216 * 169.75832 * 18 16 11 45 45 H 0.96998 * 120.00291 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 -2.1732 1.1890 6 7 2.3542 -3.1136 0.6572 7 6 1.8655 -4.3281 0.6850 8 6 0.6519 -4.4255 1.2833 9 6 -0.1301 -5.6542 1.4580 10 8 0.3424 -6.7275 1.1331 11 7 -1.3718 -5.5944 1.9784 12 6 -2.0516 -4.3983 2.5206 13 6 -3.4338 -4.9122 3.0301 14 1 -3.9363 -4.2900 3.7708 15 6 -3.0229 -6.3568 3.4906 16 6 -2.3388 -6.7224 2.1246 17 1 -1.9245 -7.7259 2.0280 18 6 -3.4986 -6.3576 1.1468 19 7 -4.1942 -5.2164 1.7793 20 6 -5.3079 -4.5703 1.3129 21 1 -5.6772 -3.6934 1.8239 22 6 -5.9621 -5.0424 0.1833 23 7 -5.5754 -6.1678 -0.3791 24 14 -7.3913 -4.0805 -0.5389 25 1 -6.8709 -3.0320 -1.4527 26 1 -8.2761 -5.0020 -1.2957 27 1 -8.1630 -3.4425 0.5579 28 16 0.1800 -2.8103 1.8064 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.6053 -0.2616 2.1369 37 1 3.1262 -0.6442 1.2952 38 1 2.3843 -5.1788 0.2684 39 1 -1.4767 -3.9777 3.3456 40 1 -2.1887 -3.6531 1.7370 41 1 -3.8872 -6.9859 3.7031 42 1 -2.3142 -6.3423 4.3187 43 1 -3.0975 -6.0656 0.1762 44 1 -4.1795 -7.2015 1.0357 45 1 -6.0327 -6.4979 -1.1682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032814500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:53 Heat of formation + Delta-G solvation = 38.067371 kcal Electronic energy + Delta-G solvation = -27155.431492 eV Core-core repulsion = 23493.381354 eV Total energy + Delta-G solvation = -3662.050138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74784 -40.91551 -39.27139 -37.33204 -35.53337 -33.54395 -32.11277 -30.78714 -30.36484 -29.01353 -28.05369 -27.04213 -25.81603 -24.96488 -23.37917 -21.57716 -21.51853 -20.94213 -19.76323 -19.53136 -18.60579 -17.66326 -17.56717 -16.90242 -16.57572 -16.18401 -15.88243 -15.77783 -15.37785 -15.19154 -14.92391 -14.81628 -14.32589 -13.93214 -13.67630 -13.52013 -13.45763 -13.15935 -13.05429 -12.89003 -12.80982 -12.71155 -12.60199 -12.41127 -12.22252 -12.12892 -12.08117 -11.96840 -11.87983 -11.62611 -11.57316 -11.33410 -10.77124 -10.64458 -10.49661 -10.03381 -9.58949 -8.93648 -7.83754 -5.22221 -0.82979 0.13190 0.55380 1.32629 1.47532 1.48886 1.56989 1.75849 2.07302 2.47831 2.99752 3.27847 3.34045 3.50039 3.74682 3.79061 3.82109 3.90300 3.96318 3.99425 4.16090 4.16213 4.32359 4.40321 4.55670 4.57878 4.70144 4.70920 4.78205 4.82994 4.88867 4.96405 4.98237 5.01940 5.08029 5.08436 5.18927 5.28506 5.38675 5.39422 5.46161 5.49770 5.64083 6.08602 6.40132 6.55629 6.89349 7.00988 7.69385 8.39446 9.25561 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.004040 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.883648 B = 6928.414465 C = 8532.822689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.043 4.043 5 C 0.048 3.952 6 N -0.499 5.499 7 C 0.114 3.886 8 C -0.321 4.321 9 C 0.602 3.398 10 O -0.579 6.579 11 N -0.605 5.605 12 C 0.077 3.923 13 C 0.143 3.857 14 H 0.144 0.856 15 C -0.128 4.128 16 C 0.104 3.896 17 H 0.119 0.881 18 C 0.182 3.818 19 N -0.613 5.613 20 C -0.230 4.230 21 H 0.098 0.902 22 C -0.068 4.068 23 N -0.955 5.955 24 Si 0.974 3.026 25 H -0.291 1.291 26 H -0.303 1.303 27 H -0.260 1.260 28 S 0.235 5.765 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.183 0.817 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.103 0.897 43 H -0.014 1.014 44 H 0.036 0.964 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.395 14.386 9.337 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.108 4.108 3 C -0.197 4.197 4 C -0.083 4.083 5 C -0.225 4.225 6 N -0.214 5.214 7 C -0.045 4.045 8 C -0.445 4.445 9 C 0.391 3.609 10 O -0.462 6.462 11 N -0.336 5.336 12 C -0.048 4.048 13 C 0.036 3.964 14 H 0.162 0.838 15 C -0.167 4.167 16 C 0.001 3.999 17 H 0.137 0.863 18 C 0.056 3.944 19 N -0.337 5.337 20 C -0.359 4.359 21 H 0.116 0.884 22 C -0.261 4.261 23 N -0.604 5.604 24 Si 0.803 3.197 25 H -0.219 1.219 26 H -0.230 1.230 27 H -0.184 1.184 28 S 0.494 5.506 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.200 0.800 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.004 0.996 44 H 0.054 0.946 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.138 14.465 9.267 21.627 hybrid contribution -0.353 -1.175 -1.856 2.225 sum 12.785 13.290 7.411 19.874 Atomic orbital electron populations 1.22070 0.95275 1.01229 1.03382 1.21071 0.95780 0.97419 0.96514 1.21781 1.01533 0.93464 1.02949 1.20693 1.03927 0.82977 1.00705 1.28326 0.95111 1.01728 0.97368 1.66309 1.34942 0.99463 1.20665 1.22185 0.91253 0.95243 0.95827 1.25649 1.02924 0.98789 1.17163 1.16672 0.80065 0.87064 0.77123 1.90759 1.70911 1.30562 1.53974 1.49136 1.12689 1.12687 1.59131 1.23430 0.95980 0.86838 0.98561 1.23600 0.88513 0.95561 0.88747 0.83847 1.24092 1.00422 0.97650 0.94565 1.24290 0.86756 0.90823 0.98042 0.86333 1.21609 0.90352 0.90886 0.91577 1.45521 1.29524 1.36080 1.22614 1.19526 1.01321 1.07003 1.08014 0.88399 1.25643 1.02309 0.98318 0.99831 1.70128 1.44379 1.22520 1.23395 0.85153 0.78930 0.77178 0.78445 1.21860 1.22958 1.18446 1.84015 1.18231 0.95854 1.52462 0.91955 0.94687 0.90479 0.92362 0.91674 0.92180 0.90985 0.86745 0.87442 0.79978 0.88410 0.91911 0.89455 0.87826 0.99621 0.94560 0.94703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 8.89 71.98 0.64 -2.11 16 2 C -0.09 -1.31 2.91 -10.80 -0.03 -1.35 16 3 C -0.14 -1.43 9.19 71.98 0.66 -0.77 16 4 C -0.04 -0.62 5.27 29.85 0.16 -0.46 16 5 C 0.05 1.09 6.02 88.46 0.53 1.62 16 6 N -0.50 -13.88 10.51 -190.31 -2.00 -15.88 16 7 C 0.11 3.51 11.09 84.23 0.93 4.45 16 8 C -0.32 -10.43 6.41 23.88 0.15 -10.27 16 9 C 0.60 23.34 7.85 86.45 0.68 24.02 16 10 O -0.58 -25.92 17.21 -4.31 -0.07 -25.99 16 11 N -0.60 -22.23 2.95 -772.93 -2.28 -24.51 16 12 C 0.08 2.41 4.59 87.16 0.40 2.81 16 13 C 0.14 4.70 5.54 46.89 0.26 4.96 16 14 H 0.14 3.81 8.14 -2.38 -0.02 3.80 16 15 C -0.13 -3.89 6.81 33.46 0.23 -3.66 16 16 C 0.10 3.97 5.25 46.93 0.25 4.22 16 17 H 0.12 4.51 8.03 -2.39 -0.02 4.49 16 18 C 0.18 8.93 4.83 87.17 0.42 9.35 16 19 N -0.61 -28.53 3.03 -647.99 -1.96 -30.49 16 20 C -0.23 -11.80 10.37 84.03 0.87 -10.93 16 21 H 0.10 4.59 7.83 -2.91 -0.02 4.57 16 22 C -0.07 -3.74 5.47 84.86 0.46 -3.28 16 23 N -0.96 -57.23 10.63 21.65 0.23 -57.00 16 24 Si 0.97 44.31 29.56 68.60 2.03 46.33 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 28 S 0.23 5.65 17.35 -56.49 -0.98 4.67 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.03 0.75 6.11 -2.38 -0.01 0.74 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.18 5.45 8.06 -2.91 -0.02 5.42 16 39 H 0.10 2.32 7.17 -2.39 -0.02 2.30 16 40 H 0.06 2.18 7.04 -2.39 -0.02 2.16 16 41 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 43 H -0.01 -0.84 8.02 -2.39 -0.02 -0.86 16 44 H 0.04 2.02 7.06 -2.38 -0.02 2.00 16 45 H 0.24 14.47 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -72.27 370.26 2.56 -69.70 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.99 Total: 14.56 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 6.62 Total: 18.60 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -6.01 Total: -127.88 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.07 Total: -25.99 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -0.98 Total: 4.67 kcal Total: -72.27 2.56 -69.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032814500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.768 kcal (2) G-P(sol) polarization free energy of solvation -72.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds