Wall clock time and date at job start Tue Mar 31 2020 18:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46636 * 2 1 4 4 N 1.30941 * 122.90328 * 269.99814 * 3 2 1 5 5 C 1.29436 * 117.36216 * 180.02562 * 4 3 2 6 6 S 1.70954 * 110.39036 * 359.73326 * 5 4 3 7 7 C 1.35660 * 122.90528 * 90.00775 * 3 2 1 8 8 C 1.46683 * 126.12827 * 359.97438 * 7 3 2 9 9 O 1.21685 * 120.00049 * 50.17650 * 8 7 3 10 10 N 1.34776 * 119.99916 * 230.17860 * 8 7 3 11 11 C 1.46890 * 120.46427 * 355.85519 * 10 8 7 12 12 C 1.53362 * 108.74305 * 124.34520 * 11 10 8 13 13 C 1.52554 * 109.12309 * 52.25969 * 12 11 10 14 14 C 1.52960 * 114.06325 * 75.54554 * 13 12 11 15 15 N 1.47163 * 87.85783 * 139.43921 * 14 13 12 16 16 C 1.36932 * 136.00276 * 153.08332 * 15 14 13 17 17 H 1.08003 * 119.99793 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99663 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00360 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99739 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46934 * 89.99614 * 20 18 16 22 22 H 1.48497 * 109.47599 * 209.99803 * 20 18 16 23 23 H 1.48501 * 109.47425 * 330.00145 * 20 18 16 24 24 C 1.47167 * 87.99459 * 333.33416 * 15 14 13 25 25 C 1.52547 * 113.43456 * 302.66904 * 13 12 11 26 26 C 1.46885 * 120.46315 * 175.83481 * 10 8 7 27 27 H 1.09000 * 109.46881 * 299.99314 * 1 2 3 28 28 H 1.08997 * 109.47460 * 60.00183 * 1 2 3 29 29 H 1.09003 * 109.46538 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46881 * 240.00686 * 2 1 3 31 31 H 1.08997 * 109.47460 * 119.99817 * 2 1 3 32 32 H 1.08006 * 124.80308 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.59474 * 4.56591 * 11 10 8 34 34 H 1.09003 * 109.59280 * 244.11933 * 11 10 8 35 35 H 1.09000 * 109.52441 * 292.36575 * 12 11 10 36 36 H 1.08999 * 109.58375 * 172.19043 * 12 11 10 37 37 H 1.08999 * 113.49377 * 24.68743 * 14 13 12 38 38 H 1.09008 * 113.48620 * 254.18385 * 14 13 12 39 39 H 0.96998 * 120.00294 * 180.02562 * 19 18 16 40 40 H 1.08999 * 113.49161 * 141.41573 * 24 15 14 41 41 H 1.09003 * 113.49240 * 271.91846 * 24 15 14 42 42 H 1.09001 * 109.52893 * 177.21860 * 25 13 12 43 43 H 1.09001 * 109.52651 * 297.42682 * 25 13 12 44 44 H 1.09007 * 109.59247 * 355.42316 * 26 10 8 45 45 H 1.09000 * 109.59416 * 115.86314 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2693 2.0915 -1.0994 5 6 2.6991 3.3060 -0.9744 6 16 2.8386 3.7214 0.6781 7 6 2.2780 2.1157 1.1390 8 6 2.1027 1.6209 2.5087 9 8 2.5828 0.5516 2.8354 10 7 1.4100 2.3507 3.4053 11 6 0.9037 3.6829 3.0493 12 6 -0.6105 3.7152 3.2901 13 6 -0.9009 3.2403 4.7105 14 6 -0.5803 4.2738 5.7915 15 7 -1.8186 3.8639 6.4729 16 6 -2.2766 3.8561 7.7633 17 1 -1.6480 4.2222 8.5616 18 6 -3.5488 3.3777 8.0453 19 7 -4.3149 2.9320 7.0724 20 14 -4.1733 3.3664 9.8057 21 1 -4.8619 4.6500 10.0949 22 1 -5.1264 2.2419 9.9858 23 1 -3.0283 3.1985 10.7362 24 6 -2.3462 3.4601 5.1597 25 6 -0.3621 1.8439 5.0053 26 6 1.1502 1.8249 4.7520 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 2.9326 3.9651 -1.7976 33 1 1.1110 3.8838 1.9983 34 1 1.3887 4.4361 3.6702 35 1 -1.1069 3.0569 2.5771 36 1 -0.9789 4.7332 3.1638 37 1 -0.6031 5.3019 5.4301 38 1 0.3230 4.0449 6.3571 39 1 -5.2040 2.5981 7.2694 40 1 -2.9355 2.5437 5.1914 41 1 -2.8489 4.2671 4.6266 42 1 -0.5604 1.5892 6.0465 43 1 -0.8500 1.1198 4.3528 44 1 1.5197 0.8018 4.8224 45 1 1.6525 2.4488 5.4912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035721441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:20 Heat of formation + Delta-G solvation = 70.233978 kcal Electronic energy + Delta-G solvation = -27455.371139 eV Core-core repulsion = 23794.715850 eV Total energy + Delta-G solvation = -3660.655289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.79439 -39.90105 -38.63600 -35.89200 -33.71621 -32.58076 -31.47565 -30.71791 -29.59430 -27.05958 -26.25161 -24.90935 -23.75966 -23.61200 -23.20636 -21.71890 -20.73351 -18.96616 -18.67225 -17.58640 -16.74349 -16.67075 -16.36766 -15.41378 -15.08889 -14.90065 -14.71918 -14.59596 -14.30403 -13.98222 -13.83133 -13.82004 -13.50787 -13.12731 -12.72960 -12.51205 -12.44575 -12.16795 -12.13142 -11.75916 -11.42583 -11.17077 -11.09171 -11.03686 -10.90518 -10.84572 -10.43223 -10.31092 -10.22527 -9.90492 -9.83756 -9.75055 -9.43229 -9.24498 -9.05303 -8.81663 -8.51646 -6.88557 -5.78144 -3.10148 0.10475 0.86669 1.28403 2.31410 2.71962 3.05177 3.37717 3.42771 3.44753 3.86345 4.37331 4.44108 4.72741 4.79984 4.84928 4.95568 5.17809 5.18597 5.25181 5.27423 5.32399 5.32571 5.45788 5.46578 5.64477 5.78510 5.79733 5.81511 5.87051 5.90847 5.97176 6.12679 6.14481 6.22008 6.27926 6.38406 6.55902 6.60627 6.75958 6.82907 7.19801 7.27107 7.33276 7.38666 7.55157 7.96456 8.00218 9.02543 9.69286 10.63619 11.39232 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.002945 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.974931 B = 9506.593042 C = 9781.109353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C 0.133 3.867 4 N -0.468 5.468 5 C 0.019 3.981 6 S 0.175 5.825 7 C -0.280 4.280 8 C 0.596 3.404 9 O -0.528 6.528 10 N -0.593 5.593 11 C 0.099 3.901 12 C -0.112 4.112 13 C -0.116 4.116 14 C 0.127 3.873 15 N -0.607 5.607 16 C -0.217 4.217 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.167 3.833 25 C -0.093 4.093 26 C 0.115 3.885 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.204 0.796 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.253 0.747 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.847 1.065 -16.511 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.004 4.004 4 N -0.182 5.182 5 C -0.276 4.276 6 S 0.430 5.570 7 C -0.404 4.404 8 C 0.381 3.619 9 O -0.406 6.406 10 N -0.325 5.325 11 C -0.024 4.024 12 C -0.151 4.151 13 C -0.117 4.117 14 C 0.000 4.000 15 N -0.333 5.333 16 C -0.345 4.345 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.041 3.959 25 C -0.131 4.131 26 C -0.006 4.006 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.221 0.779 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.118 1.195 -16.060 21.417 hybrid contribution -0.816 -0.318 0.733 1.142 sum 13.303 0.878 -15.327 20.314 Atomic orbital electron populations 1.21700 0.93707 1.02474 1.02259 1.20361 0.96624 0.88584 1.04582 1.20568 0.96788 0.98112 0.84900 1.66080 1.14758 1.06136 1.31198 1.28742 1.01844 0.96145 1.00887 1.84105 1.59216 1.11013 1.02620 1.25477 1.16879 0.98706 0.99307 1.16753 0.78646 0.84105 0.82381 1.90808 1.49238 1.22135 1.78421 1.48020 1.52950 1.17940 1.13636 1.22099 0.96089 0.83468 1.00749 1.21714 0.93693 1.01994 0.97705 1.22103 1.01364 0.95655 0.92576 1.22401 0.91434 0.94740 0.91380 1.45542 1.13505 1.72343 1.01878 1.18912 0.98023 1.36022 0.81492 0.90246 1.24769 0.96496 1.01545 0.97558 1.69819 1.09594 1.47131 1.30063 0.86145 0.78568 0.77229 0.83974 1.21676 1.21635 1.20612 1.22029 0.90630 0.98718 0.84483 1.21424 0.92706 0.95675 1.03335 1.21789 0.97358 1.00476 0.80992 0.92467 0.92390 0.91561 0.89798 0.88581 0.77919 0.90434 0.90560 0.91730 0.90494 0.95228 0.94500 0.93681 0.91158 0.95884 0.89116 0.92027 0.89069 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 37.16 0.37 -1.16 16 2 C -0.06 -0.71 6.13 -27.88 -0.17 -0.88 16 3 C 0.13 1.62 6.04 -83.89 -0.51 1.12 16 4 N -0.47 -5.26 10.50 -11.53 -0.12 -5.38 16 5 C 0.02 0.16 12.22 51.75 0.63 0.79 16 6 S 0.18 1.52 20.40 -107.50 -2.19 -0.68 16 7 C -0.28 -3.44 5.35 -37.10 -0.20 -3.64 16 8 C 0.60 8.56 7.17 -12.85 -0.09 8.47 16 9 O -0.53 -9.00 15.07 5.20 0.08 -8.92 16 10 N -0.59 -8.03 2.94 -174.17 -0.51 -8.54 16 11 C 0.10 1.17 5.94 -3.64 -0.02 1.15 16 12 C -0.11 -1.52 5.30 -26.77 -0.14 -1.66 16 13 C -0.12 -1.98 0.84 -155.02 -0.13 -2.11 16 14 C 0.13 2.43 7.63 -8.22 -0.06 2.37 16 15 N -0.61 -14.95 3.55 -184.67 -0.66 -15.61 16 16 C -0.22 -5.95 10.74 -15.06 -0.16 -6.11 16 17 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -26.85 11.52 55.49 0.64 -26.21 16 20 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.17 3.75 6.54 -8.22 -0.05 3.70 16 25 C -0.09 -1.55 5.27 -26.78 -0.14 -1.69 16 26 C 0.12 1.66 6.32 -3.65 -0.02 1.64 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.23 6.52 -51.93 -0.34 0.89 16 32 H 0.20 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.08 0.80 4.14 -34.91 -0.14 0.66 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 38 H 0.04 0.68 7.53 -51.92 -0.39 0.29 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.07 1.78 7.12 -51.93 -0.37 1.41 16 41 H 0.02 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.09 1.74 7.95 -51.93 -0.41 1.33 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.09 1.35 6.99 -51.92 -0.36 0.99 16 45 H 0.07 0.99 7.60 -51.93 -0.39 0.60 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -32.44 369.02 -9.63 -42.07 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.60 Total: -0.84 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.80 Total: 1.68 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.65 Total: -55.74 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.19 Total: -0.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.44 -9.63 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035721441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.302 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds