Wall clock time and date at job start Tue Mar 31 2020 18:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46636 * 2 1 4 4 N 1.30941 * 122.90328 * 269.99814 * 3 2 1 5 5 C 1.29436 * 117.36216 * 180.02562 * 4 3 2 6 6 S 1.70954 * 110.39036 * 359.73326 * 5 4 3 7 7 C 1.35660 * 122.90528 * 90.00775 * 3 2 1 8 8 C 1.46683 * 126.12827 * 359.97438 * 7 3 2 9 9 O 1.21685 * 120.00049 * 50.17650 * 8 7 3 10 10 N 1.34776 * 119.99916 * 230.17860 * 8 7 3 11 11 C 1.46890 * 120.46427 * 355.85519 * 10 8 7 12 12 C 1.53362 * 108.74305 * 124.34520 * 11 10 8 13 13 C 1.52554 * 109.12309 * 52.25969 * 12 11 10 14 14 C 1.52960 * 114.06325 * 75.54554 * 13 12 11 15 15 N 1.47163 * 87.85783 * 139.43921 * 14 13 12 16 16 C 1.36932 * 136.00276 * 153.08332 * 15 14 13 17 17 H 1.08003 * 119.99793 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99663 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00360 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99739 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46934 * 89.99614 * 20 18 16 22 22 H 1.48497 * 109.47599 * 209.99803 * 20 18 16 23 23 H 1.48501 * 109.47425 * 330.00145 * 20 18 16 24 24 C 1.47167 * 87.99459 * 333.33416 * 15 14 13 25 25 C 1.52547 * 113.43456 * 302.66904 * 13 12 11 26 26 C 1.46885 * 120.46315 * 175.83481 * 10 8 7 27 27 H 1.09000 * 109.46881 * 299.99314 * 1 2 3 28 28 H 1.08997 * 109.47460 * 60.00183 * 1 2 3 29 29 H 1.09003 * 109.46538 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46881 * 240.00686 * 2 1 3 31 31 H 1.08997 * 109.47460 * 119.99817 * 2 1 3 32 32 H 1.08006 * 124.80308 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.59474 * 4.56591 * 11 10 8 34 34 H 1.09003 * 109.59280 * 244.11933 * 11 10 8 35 35 H 1.09000 * 109.52441 * 292.36575 * 12 11 10 36 36 H 1.08999 * 109.58375 * 172.19043 * 12 11 10 37 37 H 1.08999 * 113.49377 * 24.68743 * 14 13 12 38 38 H 1.09008 * 113.48620 * 254.18385 * 14 13 12 39 39 H 0.96998 * 120.00294 * 180.02562 * 19 18 16 40 40 H 1.08999 * 113.49161 * 141.41573 * 24 15 14 41 41 H 1.09003 * 113.49240 * 271.91846 * 24 15 14 42 42 H 1.09001 * 109.52893 * 177.21860 * 25 13 12 43 43 H 1.09001 * 109.52651 * 297.42682 * 25 13 12 44 44 H 1.09007 * 109.59247 * 355.42316 * 26 10 8 45 45 H 1.09000 * 109.59416 * 115.86314 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2693 2.0915 -1.0994 5 6 2.6991 3.3060 -0.9744 6 16 2.8386 3.7214 0.6781 7 6 2.2780 2.1157 1.1390 8 6 2.1027 1.6209 2.5087 9 8 2.5828 0.5516 2.8354 10 7 1.4100 2.3507 3.4053 11 6 0.9037 3.6829 3.0493 12 6 -0.6105 3.7152 3.2901 13 6 -0.9009 3.2403 4.7105 14 6 -0.5803 4.2738 5.7915 15 7 -1.8186 3.8639 6.4729 16 6 -2.2766 3.8561 7.7633 17 1 -1.6480 4.2222 8.5616 18 6 -3.5488 3.3777 8.0453 19 7 -4.3149 2.9320 7.0724 20 14 -4.1733 3.3664 9.8057 21 1 -4.8619 4.6500 10.0949 22 1 -5.1264 2.2419 9.9858 23 1 -3.0283 3.1985 10.7362 24 6 -2.3462 3.4601 5.1597 25 6 -0.3621 1.8439 5.0053 26 6 1.1502 1.8249 4.7520 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 2.9326 3.9651 -1.7976 33 1 1.1110 3.8838 1.9983 34 1 1.3887 4.4361 3.6702 35 1 -1.1069 3.0569 2.5771 36 1 -0.9789 4.7332 3.1638 37 1 -0.6031 5.3019 5.4301 38 1 0.3230 4.0449 6.3571 39 1 -5.2040 2.5981 7.2694 40 1 -2.9355 2.5437 5.1914 41 1 -2.8489 4.2671 4.6266 42 1 -0.5604 1.5892 6.0465 43 1 -0.8500 1.1198 4.3528 44 1 1.5197 0.8018 4.8224 45 1 1.6525 2.4488 5.4912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035721441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:19 Heat of formation + Delta-G solvation = 50.061021 kcal Electronic energy + Delta-G solvation = -27456.245904 eV Core-core repulsion = 23794.715850 eV Total energy + Delta-G solvation = -3661.530054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86946 -41.01597 -39.89449 -37.20182 -34.56171 -34.45659 -32.69458 -32.15357 -30.62404 -28.74862 -27.19463 -26.53438 -25.19345 -24.63147 -24.17511 -23.21394 -21.97244 -20.06955 -19.46683 -18.80877 -18.64275 -17.77161 -17.40125 -16.86032 -16.41235 -16.14851 -15.98626 -15.67757 -15.52489 -15.13242 -15.12406 -14.92130 -14.61909 -14.33862 -14.09503 -13.85747 -13.71819 -13.36829 -13.17924 -12.97757 -12.95497 -12.81920 -12.60572 -12.27013 -12.23018 -12.16382 -11.95377 -11.65932 -11.62745 -11.47303 -11.16951 -10.92267 -10.80209 -10.71393 -10.34410 -9.81889 -9.68657 -8.87493 -7.88746 -5.20652 -0.66357 0.10758 0.56099 1.44252 1.45367 1.46686 1.55224 1.71297 2.03300 2.48173 3.15780 3.32895 3.41623 3.45607 3.57244 3.88506 3.92839 3.98287 4.08190 4.12767 4.24914 4.32007 4.36573 4.40364 4.54186 4.56165 4.63553 4.72014 4.75120 4.86614 4.91018 4.96199 4.97590 5.00284 5.10194 5.13128 5.17430 5.27151 5.29047 5.32725 5.44218 5.57403 5.73755 5.96384 6.22756 6.60985 6.92622 6.93269 7.63090 8.64964 9.28764 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.002945 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.974931 B = 9506.593042 C = 9781.109353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C 0.130 3.870 4 N -0.496 5.496 5 C 0.036 3.964 6 S 0.227 5.773 7 C -0.319 4.319 8 C 0.597 3.403 9 O -0.564 6.564 10 N -0.594 5.594 11 C 0.103 3.897 12 C -0.106 4.106 13 C -0.087 4.087 14 C 0.130 3.870 15 N -0.639 5.639 16 C -0.223 4.223 17 H 0.084 0.916 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.975 3.025 21 H -0.287 1.287 22 H -0.297 1.297 23 H -0.268 1.268 24 C 0.162 3.838 25 C -0.086 4.086 26 C 0.126 3.874 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.246 0.754 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.246 0.754 40 H 0.030 0.970 41 H 0.017 0.983 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.832 3.159 -18.041 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.008 4.008 4 N -0.209 5.209 5 C -0.258 4.258 6 S 0.484 5.516 7 C -0.443 4.443 8 C 0.384 3.616 9 O -0.445 6.445 10 N -0.325 5.325 11 C -0.020 4.020 12 C -0.145 4.145 13 C -0.088 4.088 14 C 0.006 3.994 15 N -0.364 5.364 16 C -0.351 4.351 17 H 0.102 0.898 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.192 1.192 24 C 0.036 3.964 25 C -0.125 4.125 26 C 0.004 3.996 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.262 0.738 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.143 3.334 -17.600 24.114 hybrid contribution -1.377 -0.916 1.122 1.998 sum 14.766 2.418 -16.479 22.258 Atomic orbital electron populations 1.21639 0.93293 1.02966 1.01563 1.20327 0.96955 0.88944 1.04047 1.20651 0.96490 0.98254 0.85388 1.66136 1.16550 1.07482 1.30780 1.29508 0.98792 0.95477 1.02070 1.83857 1.57905 1.07723 1.02159 1.25334 1.19377 1.01546 0.98014 1.17025 0.77910 0.83490 0.83155 1.90782 1.50684 1.23678 1.79308 1.48047 1.52831 1.18580 1.13081 1.22228 0.94372 0.82850 1.02501 1.21674 0.95451 1.02743 0.94599 1.21837 0.96871 0.95443 0.94692 1.22569 0.89702 0.95983 0.91187 1.45878 1.15785 1.73010 1.01742 1.19304 0.98047 1.34602 0.83196 0.89822 1.25570 0.97054 1.02173 1.01256 1.70015 1.09538 1.48770 1.31880 0.85130 0.77973 0.76712 0.79862 1.21453 1.22352 1.19247 1.22015 0.93269 0.96632 0.84441 1.21288 0.94624 0.95333 1.01236 1.21564 0.95200 1.00653 0.82141 0.94166 0.91848 0.90580 0.88845 0.90504 0.73823 0.88451 0.88594 0.91799 0.88803 0.93192 0.93356 0.94497 0.95151 0.96549 0.92207 0.92732 0.89762 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.89 71.98 0.71 -2.16 16 2 C -0.06 -1.43 6.13 29.85 0.18 -1.24 16 3 C 0.13 2.98 6.04 42.09 0.25 3.24 16 4 N -0.50 -9.82 10.50 -190.39 -2.00 -11.82 16 5 C 0.04 0.44 12.22 130.60 1.60 2.04 16 6 S 0.23 3.08 20.40 -56.49 -1.15 1.93 16 7 C -0.32 -7.27 5.35 23.88 0.13 -7.14 16 8 C 0.60 16.66 7.17 86.45 0.62 17.28 16 9 O -0.56 -19.43 15.07 -4.30 -0.06 -19.49 16 10 N -0.59 -15.18 2.94 -823.16 -2.42 -17.60 16 11 C 0.10 2.10 5.94 86.43 0.51 2.62 16 12 C -0.11 -2.64 5.30 30.57 0.16 -2.48 16 13 C -0.09 -2.94 0.84 -52.51 -0.04 -2.99 16 14 C 0.13 4.81 7.63 83.31 0.64 5.44 16 15 N -0.64 -31.76 3.55 -738.18 -2.62 -34.38 16 16 C -0.22 -12.37 10.74 84.03 0.90 -11.47 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.95 -57.76 11.52 21.65 0.25 -57.51 16 20 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C 0.16 7.47 6.54 83.31 0.54 8.02 16 25 C -0.09 -2.93 5.27 30.56 0.16 -2.77 16 26 C 0.13 3.58 6.32 86.42 0.55 4.13 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.03 6.52 -2.39 -0.02 2.02 16 32 H 0.25 0.74 8.06 -2.91 -0.02 0.71 16 33 H 0.10 1.65 4.14 -13.21 -0.05 1.59 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 2.10 8.10 -2.39 -0.02 2.08 16 37 H 0.05 1.69 8.06 -2.39 -0.02 1.68 16 38 H 0.05 1.68 7.53 -2.38 -0.02 1.66 16 39 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.03 1.62 7.12 -2.39 -0.02 1.60 16 41 H 0.02 0.78 8.09 -2.39 -0.02 0.76 16 42 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.08 2.54 6.99 -2.38 -0.02 2.52 16 45 H 0.08 2.18 7.60 -2.39 -0.02 2.16 16 Total: -1.00 -73.51 369.02 2.35 -71.16 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.95 Total: 10.74 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 7.38 Total: 9.13 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -6.79 Total: -121.31 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.06 Total: -19.49 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.15 Total: 1.93 kcal Total: -73.51 2.35 -71.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035721441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.216 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds