Wall clock time and date at job start Tue Mar 31 2020 18:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47188 * 2 1 4 4 N 1.30942 * 122.90498 * 270.18994 * 3 2 1 5 5 C 1.29432 * 117.36490 * 180.30308 * 4 3 2 6 6 S 1.70952 * 110.38990 * 359.73571 * 5 4 3 7 7 C 1.35663 * 122.90371 * 90.00208 * 3 2 1 8 8 C 1.46686 * 126.12997 * 359.97438 * 7 3 2 9 9 O 1.21681 * 120.00042 * 319.60754 * 8 7 3 10 10 N 1.34776 * 119.99743 * 139.60323 * 8 7 3 11 11 C 1.46601 * 119.68945 * 354.37033 * 10 8 7 12 12 C 1.52264 * 110.70080 * 227.46278 * 11 10 8 13 13 C 1.51525 * 108.21988 * 309.51491 * 12 11 10 14 14 H 1.08998 * 108.81403 * 305.87477 * 13 12 11 15 15 C 1.55373 * 107.77844 * 64.17859 * 13 12 11 16 16 H 1.08994 * 111.50261 * 51.17107 * 15 13 12 17 17 C 1.53740 * 100.21621 * 169.06554 * 15 13 12 18 18 C 1.55292 * 101.84124 * 320.89939 * 17 15 13 19 19 N 1.45467 * 117.33777 * 181.20897 * 13 12 11 20 20 C 1.36936 * 126.40728 * 30.68195 * 19 13 12 21 21 H 1.07998 * 119.99974 * 359.97438 * 20 19 13 22 22 C 1.38812 * 120.00192 * 179.97438 * 20 19 13 23 23 N 1.31624 * 119.99843 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00098 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47050 * 89.99782 * 24 22 20 26 26 H 1.48500 * 109.47108 * 210.00148 * 24 22 20 27 27 H 1.48500 * 109.47107 * 330.00104 * 24 22 20 28 28 C 1.47720 * 119.68649 * 174.38752 * 10 8 7 29 29 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47113 * 300.00200 * 1 2 3 31 31 H 1.09002 * 109.47231 * 59.99997 * 1 2 3 32 32 H 1.09006 * 109.47399 * 240.00159 * 2 1 3 33 33 H 1.09002 * 109.47231 * 120.00003 * 2 1 3 34 34 H 1.07994 * 124.80648 * 179.77179 * 5 4 3 35 35 H 1.09005 * 109.25076 * 348.12298 * 11 10 8 36 36 H 1.08994 * 109.25955 * 107.55275 * 11 10 8 37 37 H 1.08994 * 110.00461 * 189.45914 * 12 11 10 38 38 H 1.09000 * 108.89569 * 68.92905 * 12 11 10 39 39 H 1.09007 * 110.95269 * 202.76363 * 17 15 13 40 40 H 1.08995 * 110.95762 * 79.03554 * 17 15 13 41 41 H 1.09001 * 109.91636 * 263.14205 * 18 17 15 42 42 H 1.08999 * 109.91953 * 141.84061 * 18 17 15 43 43 H 0.96996 * 119.99638 * 179.97438 * 23 22 20 44 44 H 1.08996 * 110.06579 * 8.70916 * 28 10 8 45 45 H 1.08997 * 110.15889 * 247.18006 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2660 2.0927 -1.0993 5 6 2.7016 3.3051 -0.9744 6 16 2.8521 3.7166 0.6780 7 6 2.2780 2.1156 1.1390 8 6 2.1026 1.6209 2.5087 9 8 1.1361 0.9371 2.7896 10 7 3.0120 1.9238 3.4562 11 6 4.2352 2.6418 3.0855 12 6 5.4588 1.9709 3.6946 13 6 5.2005 1.7675 5.1738 14 1 4.9264 2.7246 5.6176 15 6 4.0104 0.7788 5.3160 16 1 4.1672 -0.1229 4.7241 17 6 4.0840 0.4784 6.8219 18 6 5.6171 0.4022 7.0572 19 7 6.2629 1.1601 5.9601 20 6 7.6084 1.2690 5.7299 21 1 7.9679 1.8518 4.8948 22 6 8.5102 0.6304 6.5701 23 7 8.0720 -0.0802 7.5876 24 14 10.3456 0.7796 6.2564 25 1 10.8787 1.9569 6.9879 26 1 11.0304 -0.4497 6.7309 27 1 10.5869 0.9503 4.8011 28 6 2.7671 1.5286 4.8583 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9361 3.9637 -1.7975 35 1 4.3297 2.6540 1.9996 36 1 4.1756 3.6666 3.4519 37 1 6.3375 2.6005 3.5549 38 1 5.6113 1.0071 3.2090 39 1 3.6063 -0.4737 7.0533 40 1 3.6402 1.2868 7.4029 41 1 5.9451 -0.6370 7.0339 42 1 5.8682 0.8523 8.0176 43 1 8.7022 -0.5267 8.1744 44 1 1.8950 0.8775 4.9164 45 1 2.6149 2.4132 5.4767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036731943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:01 Heat of formation + Delta-G solvation = 42.779637 kcal Electronic energy + Delta-G solvation = -27481.730117 eV Core-core repulsion = 23819.884318 eV Total energy + Delta-G solvation = -3661.845799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75119 -39.76677 -38.16189 -35.51021 -33.64048 -32.80161 -31.69725 -30.61642 -29.27412 -28.13866 -26.30185 -24.94975 -23.68715 -23.40460 -22.46204 -21.22136 -20.09481 -19.60726 -18.64235 -18.41504 -17.01535 -16.32509 -16.23528 -15.66891 -15.11553 -14.81749 -14.64110 -14.42365 -14.25130 -14.02632 -13.89239 -13.64208 -13.19872 -13.00050 -12.70975 -12.60183 -12.43962 -12.08214 -11.73085 -11.57382 -11.49792 -11.35134 -11.01608 -10.92371 -10.83302 -10.75990 -10.28172 -10.16169 -10.12729 -9.94002 -9.83942 -9.69853 -9.58585 -9.40214 -9.06723 -8.65620 -8.61297 -6.87580 -5.74870 -3.08332 0.10156 0.92337 1.33348 2.31264 2.78747 3.06725 3.37182 3.42116 3.44261 3.88315 4.40004 4.46358 4.75765 4.81964 4.89802 5.04156 5.18303 5.26549 5.27639 5.30315 5.37279 5.47849 5.51628 5.55438 5.74897 5.82567 5.82883 5.85449 5.96134 6.04436 6.09032 6.12097 6.17582 6.22867 6.29315 6.42469 6.56721 6.58972 6.76346 7.01349 7.27943 7.40697 7.51809 7.58189 7.77784 8.03086 8.20853 9.15874 9.79418 10.47172 11.37604 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.003310 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.285055 B = 8455.942048 C = 9235.674691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C 0.136 3.864 4 N -0.471 5.471 5 C 0.020 3.980 6 S 0.178 5.822 7 C -0.284 4.284 8 C 0.593 3.407 9 O -0.524 6.524 10 N -0.599 5.599 11 C 0.104 3.896 12 C -0.129 4.129 13 C 0.169 3.831 14 H 0.020 0.980 15 C -0.125 4.125 16 H 0.080 0.920 17 C -0.134 4.134 18 C 0.177 3.823 19 N -0.594 5.594 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.129 3.871 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.204 0.796 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.252 0.748 44 H 0.093 0.907 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 6.972 -13.762 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C -0.001 4.001 4 N -0.184 5.184 5 C -0.275 4.275 6 S 0.434 5.566 7 C -0.408 4.408 8 C 0.379 3.621 9 O -0.402 6.402 10 N -0.331 5.331 11 C -0.020 4.020 12 C -0.168 4.168 13 C 0.060 3.940 14 H 0.037 0.963 15 C -0.145 4.145 16 H 0.098 0.902 17 C -0.173 4.173 18 C 0.053 3.947 19 N -0.319 5.319 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.007 3.993 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.221 0.779 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.872 7.304 -13.529 20.052 hybrid contribution 0.988 -0.547 -0.292 1.166 sum -11.884 6.757 -13.821 19.440 Atomic orbital electron populations 1.21672 0.93504 1.02198 1.02471 1.20206 0.97071 0.88233 1.03533 1.20628 0.96164 0.98338 0.84996 1.66084 1.14884 1.06202 1.31259 1.28753 1.01495 0.96229 1.01049 1.84162 1.57603 1.12542 1.02327 1.25532 1.16517 0.99417 0.99324 1.16781 0.82947 0.79992 0.82416 1.90801 1.30594 1.38153 1.80629 1.48189 1.19557 1.56938 1.08422 1.21739 0.84483 0.95732 1.00086 1.21571 0.95947 1.01387 0.97878 1.20602 0.88887 0.94212 0.90256 0.96261 1.22631 0.95015 0.99293 0.97584 0.90194 1.22701 1.00322 1.00418 0.93895 1.21536 0.84984 0.97219 0.90954 1.44194 1.00764 1.57833 1.29067 1.18984 0.80046 1.26444 1.10058 0.90393 1.24792 0.98016 0.99864 0.97675 1.69938 1.32596 1.36525 1.17733 0.86157 0.85191 0.77087 0.77548 1.21614 1.21692 1.20718 1.21653 0.99209 0.99381 0.79012 0.91994 0.91246 0.92978 0.90121 0.89711 0.77933 0.90323 0.91341 0.90230 0.91487 0.91966 0.92286 0.92689 0.94301 0.93727 0.88896 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.83 37.16 0.37 -1.19 16 2 C -0.05 -0.60 5.70 -27.88 -0.16 -0.76 16 3 C 0.14 1.73 6.04 -83.89 -0.51 1.22 16 4 N -0.47 -5.55 10.50 -11.53 -0.12 -5.67 16 5 C 0.02 0.18 12.22 51.75 0.63 0.81 16 6 S 0.18 1.65 20.24 -107.50 -2.18 -0.52 16 7 C -0.28 -3.64 5.33 -37.09 -0.20 -3.84 16 8 C 0.59 8.77 7.06 -12.85 -0.09 8.68 16 9 O -0.52 -8.81 14.20 5.21 0.07 -8.74 16 10 N -0.60 -8.59 3.00 -175.07 -0.53 -9.11 16 11 C 0.10 1.37 5.31 -4.36 -0.02 1.35 16 12 C -0.13 -2.13 5.36 -27.85 -0.15 -2.28 16 13 C 0.17 3.26 2.58 -67.97 -0.18 3.09 16 14 H 0.02 0.39 7.96 -51.93 -0.41 -0.02 16 15 C -0.12 -2.16 2.83 -89.37 -0.25 -2.41 16 16 H 0.08 1.52 8.12 -51.93 -0.42 1.09 16 17 C -0.13 -2.42 6.56 -25.13 -0.16 -2.59 16 18 C 0.18 4.18 5.45 -1.92 -0.01 4.17 16 19 N -0.59 -14.48 3.35 -163.09 -0.55 -15.03 16 20 C -0.23 -6.06 9.88 -15.06 -0.15 -6.21 16 21 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -26.55 10.44 55.49 0.58 -25.97 16 24 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 28 C 0.13 1.90 6.02 -3.76 -0.02 1.87 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.89 7.06 -51.93 -0.37 0.52 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.10 7.23 -51.93 -0.38 0.73 16 34 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.08 0.94 4.72 -40.71 -0.19 0.75 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.32 7.62 -51.93 -0.40 0.92 16 38 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 39 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 40 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 41 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 42 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.09 1.38 6.98 -51.93 -0.36 1.02 16 45 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -31.40 361.55 -9.91 -41.31 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.62 Total: 0.05 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.00 Total: 1.61 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.61 Total: -55.78 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.18 Total: -0.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.40 -9.91 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.093 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds