Wall clock time and date at job start Tue Mar 31 2020 18:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47188 * 2 1 4 4 N 1.30942 * 122.90498 * 270.18994 * 3 2 1 5 5 C 1.29432 * 117.36490 * 180.30308 * 4 3 2 6 6 S 1.70952 * 110.38990 * 359.73571 * 5 4 3 7 7 C 1.35663 * 122.90371 * 90.00208 * 3 2 1 8 8 C 1.46686 * 126.12997 * 359.97438 * 7 3 2 9 9 O 1.21681 * 120.00042 * 319.60754 * 8 7 3 10 10 N 1.34776 * 119.99743 * 139.60323 * 8 7 3 11 11 C 1.46601 * 119.68945 * 354.37033 * 10 8 7 12 12 C 1.52264 * 110.70080 * 227.46278 * 11 10 8 13 13 C 1.51525 * 108.21988 * 309.51491 * 12 11 10 14 14 H 1.08998 * 108.81403 * 305.87477 * 13 12 11 15 15 C 1.55373 * 107.77844 * 64.17859 * 13 12 11 16 16 H 1.08994 * 111.50261 * 51.17107 * 15 13 12 17 17 C 1.53740 * 100.21621 * 169.06554 * 15 13 12 18 18 C 1.55292 * 101.84124 * 320.89939 * 17 15 13 19 19 N 1.45467 * 117.33777 * 181.20897 * 13 12 11 20 20 C 1.36936 * 126.40728 * 30.68195 * 19 13 12 21 21 H 1.07998 * 119.99974 * 359.97438 * 20 19 13 22 22 C 1.38812 * 120.00192 * 179.97438 * 20 19 13 23 23 N 1.31624 * 119.99843 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00098 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47050 * 89.99782 * 24 22 20 26 26 H 1.48500 * 109.47108 * 210.00148 * 24 22 20 27 27 H 1.48500 * 109.47107 * 330.00104 * 24 22 20 28 28 C 1.47720 * 119.68649 * 174.38752 * 10 8 7 29 29 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47113 * 300.00200 * 1 2 3 31 31 H 1.09002 * 109.47231 * 59.99997 * 1 2 3 32 32 H 1.09006 * 109.47399 * 240.00159 * 2 1 3 33 33 H 1.09002 * 109.47231 * 120.00003 * 2 1 3 34 34 H 1.07994 * 124.80648 * 179.77179 * 5 4 3 35 35 H 1.09005 * 109.25076 * 348.12298 * 11 10 8 36 36 H 1.08994 * 109.25955 * 107.55275 * 11 10 8 37 37 H 1.08994 * 110.00461 * 189.45914 * 12 11 10 38 38 H 1.09000 * 108.89569 * 68.92905 * 12 11 10 39 39 H 1.09007 * 110.95269 * 202.76363 * 17 15 13 40 40 H 1.08995 * 110.95762 * 79.03554 * 17 15 13 41 41 H 1.09001 * 109.91636 * 263.14205 * 18 17 15 42 42 H 1.08999 * 109.91953 * 141.84061 * 18 17 15 43 43 H 0.96996 * 119.99638 * 179.97438 * 23 22 20 44 44 H 1.08996 * 110.06579 * 8.70916 * 28 10 8 45 45 H 1.08997 * 110.15889 * 247.18006 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2660 2.0927 -1.0993 5 6 2.7016 3.3051 -0.9744 6 16 2.8521 3.7166 0.6780 7 6 2.2780 2.1156 1.1390 8 6 2.1026 1.6209 2.5087 9 8 1.1361 0.9371 2.7896 10 7 3.0120 1.9238 3.4562 11 6 4.2352 2.6418 3.0855 12 6 5.4588 1.9709 3.6946 13 6 5.2005 1.7675 5.1738 14 1 4.9264 2.7246 5.6176 15 6 4.0104 0.7788 5.3160 16 1 4.1672 -0.1229 4.7241 17 6 4.0840 0.4784 6.8219 18 6 5.6171 0.4022 7.0572 19 7 6.2629 1.1601 5.9601 20 6 7.6084 1.2690 5.7299 21 1 7.9679 1.8518 4.8948 22 6 8.5102 0.6304 6.5701 23 7 8.0720 -0.0802 7.5876 24 14 10.3456 0.7796 6.2564 25 1 10.8787 1.9569 6.9879 26 1 11.0304 -0.4497 6.7309 27 1 10.5869 0.9503 4.8011 28 6 2.7671 1.5286 4.8583 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9361 3.9637 -1.7975 35 1 4.3297 2.6540 1.9996 36 1 4.1756 3.6666 3.4519 37 1 6.3375 2.6005 3.5549 38 1 5.6113 1.0071 3.2090 39 1 3.6063 -0.4737 7.0533 40 1 3.6402 1.2868 7.4029 41 1 5.9451 -0.6370 7.0339 42 1 5.8682 0.8523 8.0176 43 1 8.7022 -0.5267 8.1744 44 1 1.8950 0.8775 4.9164 45 1 2.6149 2.4132 5.4767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036731943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:00 Heat of formation + Delta-G solvation = 23.456091 kcal Electronic energy + Delta-G solvation = -27482.568049 eV Core-core repulsion = 23819.884318 eV Total energy + Delta-G solvation = -3662.683731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81480 -40.84902 -39.50462 -36.91795 -34.62099 -34.48685 -33.13281 -31.93251 -30.70967 -29.55442 -27.23530 -26.65540 -25.07416 -24.29631 -23.82194 -22.35953 -21.81809 -21.00911 -19.54995 -19.46708 -18.51066 -17.67377 -17.33717 -16.99757 -16.63337 -16.06301 -15.76363 -15.69180 -15.54234 -15.21661 -15.06337 -14.70267 -14.69206 -14.21965 -14.11850 -13.92208 -13.43302 -13.29607 -13.24061 -13.10264 -12.94259 -12.70490 -12.54508 -12.23108 -12.16764 -12.00750 -11.92402 -11.79302 -11.63768 -11.54051 -11.24519 -11.02582 -10.73029 -10.69973 -10.38151 -9.91137 -9.72793 -8.87106 -7.82789 -5.17269 -0.71432 0.12811 0.56154 1.41163 1.46681 1.48083 1.56246 1.71874 2.02402 2.51028 3.13232 3.33688 3.36249 3.51887 3.77747 3.82614 3.95343 3.98857 4.07859 4.12529 4.18736 4.35641 4.38218 4.40518 4.47754 4.57252 4.62514 4.67759 4.74115 4.78389 4.86620 4.95445 4.98641 5.01925 5.07766 5.15871 5.18067 5.31294 5.41842 5.51998 5.52710 5.66563 5.77285 6.18375 6.21411 6.58762 6.92611 7.10002 7.80195 8.48660 9.29067 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.003310 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.285055 B = 8455.942048 C = 9235.674691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C 0.132 3.868 4 N -0.498 5.498 5 C 0.036 3.964 6 S 0.226 5.774 7 C -0.323 4.323 8 C 0.594 3.406 9 O -0.552 6.552 10 N -0.602 5.602 11 C 0.112 3.888 12 C -0.121 4.121 13 C 0.159 3.841 14 H 0.028 0.972 15 C -0.110 4.110 16 H 0.058 0.942 17 C -0.119 4.119 18 C 0.182 3.818 19 N -0.616 5.616 20 C -0.230 4.230 21 H 0.088 0.912 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.973 3.027 25 H -0.286 1.286 26 H -0.300 1.300 27 H -0.267 1.267 28 C 0.137 3.863 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.015 0.985 42 H 0.006 0.994 43 H 0.244 0.756 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.514 9.377 -16.138 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 C -0.006 4.006 4 N -0.212 5.212 5 C -0.258 4.258 6 S 0.483 5.517 7 C -0.446 4.446 8 C 0.381 3.619 9 O -0.431 6.431 10 N -0.334 5.334 11 C -0.012 4.012 12 C -0.161 4.161 13 C 0.052 3.948 14 H 0.046 0.954 15 C -0.130 4.130 16 H 0.077 0.923 17 C -0.158 4.158 18 C 0.057 3.943 19 N -0.340 5.340 20 C -0.359 4.359 21 H 0.106 0.894 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.802 3.198 25 H -0.213 1.213 26 H -0.226 1.226 27 H -0.192 1.192 28 C 0.016 3.984 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.261 0.739 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.033 0.967 42 H 0.024 0.976 43 H 0.054 0.946 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.528 9.751 -15.940 23.069 hybrid contribution 1.177 -1.238 0.375 1.749 sum -12.351 8.513 -15.565 21.617 Atomic orbital electron populations 1.21588 0.92970 1.02777 1.01677 1.20204 0.97536 0.88523 1.03050 1.20732 0.95808 0.98577 0.85474 1.66139 1.16659 1.07503 1.30877 1.29510 0.98558 0.95541 1.02181 1.83926 1.56359 1.09462 1.01983 1.25418 1.19059 1.01967 0.98197 1.17022 0.82442 0.79331 0.83125 1.90779 1.31713 1.39327 1.81320 1.48214 1.19885 1.57073 1.08209 1.21746 0.82379 0.96108 1.00937 1.21479 0.97890 1.00894 0.95804 1.20839 0.88066 0.94419 0.91468 0.95443 1.22455 0.95738 0.98240 0.96612 0.92332 1.22566 0.96118 1.02254 0.94871 1.21301 0.88717 0.94513 0.89731 1.44484 1.01230 1.58158 1.30129 1.19411 0.81468 1.25347 1.09635 0.89403 1.25618 1.02188 1.00436 0.97988 1.70167 1.33370 1.37951 1.18851 0.85145 0.80217 0.76410 0.78005 1.21348 1.22647 1.19155 1.21543 0.97373 0.99813 0.79690 0.90799 0.93226 0.92353 0.89199 0.91483 0.73859 0.88690 0.88935 0.90052 0.93403 0.90448 0.89985 0.96655 0.97602 0.94640 0.88908 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.83 71.98 0.71 -2.15 16 2 C -0.05 -1.25 5.70 29.85 0.17 -1.08 16 3 C 0.13 3.17 6.04 42.09 0.25 3.43 16 4 N -0.50 -10.44 10.50 -190.40 -2.00 -12.44 16 5 C 0.04 0.50 12.22 130.60 1.60 2.09 16 6 S 0.23 3.39 20.24 -56.49 -1.14 2.25 16 7 C -0.32 -7.68 5.33 23.88 0.13 -7.56 16 8 C 0.59 16.84 7.06 86.45 0.61 17.45 16 9 O -0.55 -18.38 14.20 -4.29 -0.06 -18.45 16 10 N -0.60 -16.15 3.00 -826.02 -2.48 -18.62 16 11 C 0.11 2.66 5.31 86.12 0.46 3.12 16 12 C -0.12 -3.86 5.36 29.87 0.16 -3.70 16 13 C 0.16 6.02 2.58 45.52 0.12 6.13 16 14 H 0.03 1.04 7.96 -2.39 -0.02 1.02 16 15 C -0.11 -3.74 2.83 -9.98 -0.03 -3.77 16 16 H 0.06 2.25 8.12 -2.39 -0.02 2.23 16 17 C -0.12 -4.26 6.56 31.63 0.21 -4.05 16 18 C 0.18 8.91 5.45 86.85 0.47 9.39 16 19 N -0.62 -30.51 3.35 -669.89 -2.24 -32.75 16 20 C -0.23 -12.39 9.88 84.03 0.83 -11.56 16 21 H 0.09 4.44 7.21 -2.91 -0.02 4.42 16 22 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 23 N -0.95 -57.38 10.44 21.65 0.23 -57.15 16 24 Si 0.97 45.20 29.55 68.60 2.03 47.22 16 25 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 C 0.14 3.80 6.02 85.89 0.52 4.31 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.27 7.06 -2.39 -0.02 1.25 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.07 1.78 7.23 -2.39 -0.02 1.77 16 34 H 0.25 1.06 8.06 -2.91 -0.02 1.03 16 35 H 0.10 1.98 4.72 -9.52 -0.04 1.94 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.55 7.62 -2.39 -0.02 2.53 16 38 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 39 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.08 2.57 8.13 -2.39 -0.02 2.55 16 41 H 0.02 0.85 7.21 -2.39 -0.02 0.83 16 42 H 0.01 0.31 7.77 -2.39 -0.02 0.29 16 43 H 0.24 14.41 8.31 -92.71 -0.77 13.63 16 44 H 0.09 2.63 6.98 -2.39 -0.02 2.61 16 45 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 Total: -1.00 -71.43 361.55 1.96 -69.47 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.96 Total: 11.87 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.67 Total: 8.60 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -6.49 Total: -120.97 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.06 Total: -18.45 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.14 Total: 2.25 kcal Total: -71.43 1.96 -69.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.926 kcal (2) G-P(sol) polarization free energy of solvation -71.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds