Wall clock time and date at job start Tue Mar 31 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47126 * 2 1 4 4 N 1.30943 * 122.90455 * 270.00254 * 3 2 1 5 5 C 1.29423 * 117.36438 * 179.97438 * 4 3 2 6 6 S 1.70954 * 110.39132 * 359.76622 * 5 4 3 7 7 C 1.35654 * 122.90358 * 90.00718 * 3 2 1 8 8 C 1.46682 * 126.13195 * 359.95634 * 7 3 2 9 9 O 1.21690 * 119.99904 * 41.21736 * 8 7 3 10 10 N 1.34771 * 120.00423 * 220.93673 * 8 7 3 11 11 C 1.46605 * 119.68043 * 5.62210 * 10 8 7 12 12 C 1.54377 * 110.34906 * 132.09821 * 11 10 8 13 13 C 1.51521 * 107.26365 * 51.31818 * 12 11 10 14 14 H 1.08995 * 108.82326 * 53.30226 * 13 12 11 15 15 C 1.55368 * 107.78225 * 294.99269 * 13 12 11 16 16 H 1.09001 * 112.27700 * 309.16619 * 15 13 12 17 17 C 1.53740 * 100.22457 * 190.94241 * 15 13 12 18 18 C 1.55285 * 101.84407 * 39.09375 * 17 15 13 19 19 N 1.45479 * 117.34008 * 177.96271 * 13 12 11 20 20 C 1.36936 * 126.40042 * 329.34935 * 19 13 12 21 21 H 1.08000 * 120.00274 * 359.97148 * 20 19 13 22 22 C 1.38815 * 119.99786 * 179.97438 * 20 19 13 23 23 N 1.31620 * 119.99784 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00054 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46863 * 60.00666 * 24 22 20 26 26 H 1.48500 * 109.47498 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47686 * 300.00676 * 24 22 20 28 28 C 1.47714 * 119.68880 * 185.89358 * 10 8 7 29 29 H 1.09003 * 109.46975 * 299.99551 * 1 2 3 30 30 H 1.08993 * 109.47284 * 59.99888 * 1 2 3 31 31 H 1.09004 * 109.46877 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46648 * 240.00167 * 2 1 3 33 33 H 1.08997 * 109.47714 * 120.00323 * 2 1 3 34 34 H 1.08007 * 124.80155 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.25485 * 252.46311 * 11 10 8 36 36 H 1.08996 * 109.25834 * 11.89801 * 11 10 8 37 37 H 1.08997 * 110.04346 * 291.81370 * 12 11 10 38 38 H 1.08999 * 109.86149 * 170.71571 * 12 11 10 39 39 H 1.08997 * 110.95151 * 157.22800 * 17 15 13 40 40 H 1.09000 * 110.95692 * 280.95142 * 17 15 13 41 41 H 1.09000 * 109.92027 * 96.86392 * 18 17 15 42 42 H 1.08992 * 109.92115 * 217.97182 * 18 17 15 43 43 H 0.97002 * 119.99996 * 179.97438 * 23 22 20 44 44 H 1.09004 * 110.06964 * 351.26436 * 28 10 8 45 45 H 1.09002 * 110.07372 * 112.84725 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2694 2.0915 -1.0994 5 6 2.6983 3.3062 -0.9744 6 16 2.8377 3.7216 0.6780 7 6 2.2781 2.1155 1.1389 8 6 2.1025 1.6210 2.5087 9 8 2.4371 0.4861 2.7934 10 7 1.5758 2.4252 3.4532 11 6 1.0670 3.7482 3.0789 12 6 -0.3340 3.9760 3.6859 13 6 -0.2389 3.6650 5.1658 14 1 0.5759 4.2474 5.5959 15 6 0.0814 2.1518 5.3130 16 1 -0.5985 1.5273 4.7336 17 6 -0.1436 1.9709 6.8231 18 6 -1.3892 2.8650 7.0690 19 7 -1.4387 3.8536 5.9666 20 6 -2.4286 4.7730 5.7432 21 1 -2.3589 5.4482 4.9032 22 6 -3.5216 4.8372 6.5965 23 7 -3.6062 4.0147 7.6205 24 14 -4.8716 6.0918 6.2922 25 1 -5.4737 5.8566 4.9552 26 1 -5.9179 5.9566 7.3373 27 1 -4.2965 7.4601 6.3423 28 6 1.5222 1.9677 4.8567 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.9309 3.9655 -1.7976 35 1 1.7505 4.5135 3.4467 36 1 1.0043 3.8151 1.9928 37 1 -1.0582 3.3124 3.2134 38 1 -0.6348 5.0140 3.5438 39 1 -0.3578 0.9295 7.0632 40 1 0.7138 2.3320 7.3910 41 1 -2.2921 2.2544 7.0609 42 1 -1.2957 3.3767 8.0268 43 1 -4.3698 4.0598 8.2170 44 1 1.8026 0.9161 4.9183 45 1 2.1895 2.5707 5.4725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036731944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:05 Heat of formation + Delta-G solvation = 42.614281 kcal Electronic energy + Delta-G solvation = -27597.782295 eV Core-core repulsion = 23935.929326 eV Total energy + Delta-G solvation = -3661.852969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74559 -39.74509 -38.15982 -35.47823 -33.67121 -32.79384 -31.63029 -30.60114 -29.28491 -28.11425 -26.31787 -24.93442 -23.70790 -23.35530 -22.50417 -21.19957 -20.09106 -19.62355 -18.63585 -18.44705 -17.00815 -16.31846 -16.27113 -15.57952 -15.12404 -14.87441 -14.59828 -14.40255 -14.26969 -13.98030 -13.95700 -13.65460 -13.17675 -12.99674 -12.79941 -12.54061 -12.46942 -12.10451 -11.71551 -11.58312 -11.49873 -11.36139 -11.06361 -10.91865 -10.83187 -10.77776 -10.28046 -10.18446 -10.12393 -9.93912 -9.81817 -9.69908 -9.58633 -9.40617 -9.05867 -8.65142 -8.62249 -6.87469 -5.74555 -3.08068 0.10033 0.92063 1.33072 2.31146 2.78769 3.05829 3.37622 3.42095 3.43542 3.88977 4.40059 4.46523 4.75344 4.83095 4.90265 5.01270 5.17985 5.22101 5.27791 5.29262 5.35700 5.46105 5.51404 5.54405 5.73689 5.82141 5.82897 5.84317 5.95715 6.01527 6.08551 6.11511 6.17171 6.19559 6.28788 6.41933 6.56751 6.58740 6.76047 7.01274 7.27289 7.40923 7.51768 7.58054 7.77954 8.02047 8.21117 9.16036 9.79616 10.47467 11.37833 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003410 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.839031 B = 8209.672184 C = 8755.867550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C 0.137 3.863 4 N -0.471 5.471 5 C 0.020 3.980 6 S 0.178 5.822 7 C -0.285 4.285 8 C 0.595 3.405 9 O -0.528 6.528 10 N -0.598 5.598 11 C 0.101 3.899 12 C -0.126 4.126 13 C 0.168 3.832 14 H 0.020 0.980 15 C -0.124 4.124 16 H 0.080 0.920 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.594 5.594 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.128 3.872 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.204 0.796 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.253 0.747 44 H 0.093 0.907 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.534 -2.303 -13.849 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C 0.000 4.000 4 N -0.184 5.184 5 C -0.275 4.275 6 S 0.434 5.566 7 C -0.409 4.409 8 C 0.381 3.619 9 O -0.406 6.406 10 N -0.330 5.330 11 C -0.023 4.023 12 C -0.165 4.165 13 C 0.060 3.940 14 H 0.038 0.962 15 C -0.144 4.144 16 H 0.099 0.901 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.318 5.318 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.006 3.994 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.221 0.779 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.743 -2.036 -13.595 19.439 hybrid contribution -1.070 0.171 -0.304 1.125 sum 12.673 -1.866 -13.899 18.902 Atomic orbital electron populations 1.21688 0.93811 1.02400 1.02170 1.20406 0.96569 0.88590 1.04754 1.20616 0.96300 0.98126 0.84958 1.66093 1.14896 1.06164 1.31278 1.28751 1.01635 0.96120 1.01012 1.84152 1.59087 1.11021 1.02384 1.25496 1.17353 0.98668 0.99344 1.16778 0.77797 0.84920 0.82422 1.90784 1.51445 1.17923 1.80472 1.48191 1.59155 1.17200 1.08447 1.22149 0.96756 0.83284 1.00062 1.21940 0.94147 1.02678 0.97759 1.20621 0.90868 0.92259 0.90264 0.96236 1.22637 0.94777 0.99475 0.97521 0.90117 1.22717 1.00427 1.00364 0.93947 1.21523 0.93004 0.89319 0.90842 1.44190 1.20433 1.39203 1.28013 1.18936 0.97538 1.09620 1.09522 0.90458 1.24785 0.98568 0.99359 0.97565 1.69927 1.30810 1.39175 1.16892 0.86240 0.81680 0.80891 0.77183 1.21206 1.21597 1.21182 1.21707 0.97491 1.01236 0.78937 0.92562 0.92470 0.91590 0.89899 0.88105 0.77922 0.91165 0.90376 0.91304 0.90340 0.91974 0.92291 0.92719 0.94326 0.93675 0.88896 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.16 0.37 -1.25 16 2 C -0.06 -0.76 6.13 -27.88 -0.17 -0.93 16 3 C 0.14 1.75 6.04 -83.90 -0.51 1.25 16 4 N -0.47 -5.55 10.50 -11.53 -0.12 -5.67 16 5 C 0.02 0.18 12.22 51.75 0.63 0.81 16 6 S 0.18 1.66 20.28 -107.50 -2.18 -0.52 16 7 C -0.28 -3.68 5.31 -37.10 -0.20 -3.87 16 8 C 0.60 8.89 7.29 -12.85 -0.09 8.79 16 9 O -0.53 -9.08 14.58 5.20 0.08 -9.01 16 10 N -0.60 -8.59 2.99 -173.76 -0.52 -9.11 16 11 C 0.10 1.34 5.38 -3.26 -0.02 1.32 16 12 C -0.13 -2.08 5.50 -26.76 -0.15 -2.23 16 13 C 0.17 3.24 2.57 -67.97 -0.17 3.07 16 14 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 15 C -0.12 -2.14 2.85 -89.36 -0.26 -2.39 16 16 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.14 -2.44 6.54 -25.14 -0.16 -2.61 16 18 C 0.18 4.17 5.45 -1.92 -0.01 4.16 16 19 N -0.59 -14.45 3.35 -163.09 -0.55 -14.99 16 20 C -0.23 -6.07 9.88 -15.06 -0.15 -6.22 16 21 H 0.08 1.96 7.21 -52.49 -0.38 1.58 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -26.52 10.44 55.49 0.58 -25.94 16 24 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 28 C 0.13 1.88 5.97 -3.76 -0.02 1.86 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.10 1.34 6.19 -51.93 -0.32 1.02 16 34 H 0.20 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.93 4.74 -41.54 -0.20 0.73 16 37 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 38 H 0.08 1.29 7.62 -51.93 -0.40 0.90 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 42 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.09 1.39 6.98 -51.93 -0.36 1.03 16 45 H 0.07 0.98 8.08 -51.93 -0.42 0.57 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -31.48 362.83 -9.90 -41.38 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.62 Total: 0.32 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.00 Total: 1.50 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.61 Total: -55.72 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.18 Total: -0.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.48 -9.90 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.994 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds