Wall clock time and date at job start Tue Mar 31 2020 18:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47126 * 2 1 4 4 N 1.30943 * 122.90455 * 270.00254 * 3 2 1 5 5 C 1.29423 * 117.36438 * 179.97438 * 4 3 2 6 6 S 1.70954 * 110.39132 * 359.76622 * 5 4 3 7 7 C 1.35654 * 122.90358 * 90.00718 * 3 2 1 8 8 C 1.46682 * 126.13195 * 359.95634 * 7 3 2 9 9 O 1.21690 * 119.99904 * 41.21736 * 8 7 3 10 10 N 1.34771 * 120.00423 * 220.93673 * 8 7 3 11 11 C 1.46605 * 119.68043 * 5.62210 * 10 8 7 12 12 C 1.54377 * 110.34906 * 132.09821 * 11 10 8 13 13 C 1.51521 * 107.26365 * 51.31818 * 12 11 10 14 14 H 1.08995 * 108.82326 * 53.30226 * 13 12 11 15 15 C 1.55368 * 107.78225 * 294.99269 * 13 12 11 16 16 H 1.09001 * 112.27700 * 309.16619 * 15 13 12 17 17 C 1.53740 * 100.22457 * 190.94241 * 15 13 12 18 18 C 1.55285 * 101.84407 * 39.09375 * 17 15 13 19 19 N 1.45479 * 117.34008 * 177.96271 * 13 12 11 20 20 C 1.36936 * 126.40042 * 329.34935 * 19 13 12 21 21 H 1.08000 * 120.00274 * 359.97148 * 20 19 13 22 22 C 1.38815 * 119.99786 * 179.97438 * 20 19 13 23 23 N 1.31620 * 119.99784 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00054 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46863 * 60.00666 * 24 22 20 26 26 H 1.48500 * 109.47498 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47686 * 300.00676 * 24 22 20 28 28 C 1.47714 * 119.68880 * 185.89358 * 10 8 7 29 29 H 1.09003 * 109.46975 * 299.99551 * 1 2 3 30 30 H 1.08993 * 109.47284 * 59.99888 * 1 2 3 31 31 H 1.09004 * 109.46877 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46648 * 240.00167 * 2 1 3 33 33 H 1.08997 * 109.47714 * 120.00323 * 2 1 3 34 34 H 1.08007 * 124.80155 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.25485 * 252.46311 * 11 10 8 36 36 H 1.08996 * 109.25834 * 11.89801 * 11 10 8 37 37 H 1.08997 * 110.04346 * 291.81370 * 12 11 10 38 38 H 1.08999 * 109.86149 * 170.71571 * 12 11 10 39 39 H 1.08997 * 110.95151 * 157.22800 * 17 15 13 40 40 H 1.09000 * 110.95692 * 280.95142 * 17 15 13 41 41 H 1.09000 * 109.92027 * 96.86392 * 18 17 15 42 42 H 1.08992 * 109.92115 * 217.97182 * 18 17 15 43 43 H 0.97002 * 119.99996 * 179.97438 * 23 22 20 44 44 H 1.09004 * 110.06964 * 351.26436 * 28 10 8 45 45 H 1.09002 * 110.07372 * 112.84725 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2694 2.0915 -1.0994 5 6 2.6983 3.3062 -0.9744 6 16 2.8377 3.7216 0.6780 7 6 2.2781 2.1155 1.1389 8 6 2.1025 1.6210 2.5087 9 8 2.4371 0.4861 2.7934 10 7 1.5758 2.4252 3.4532 11 6 1.0670 3.7482 3.0789 12 6 -0.3340 3.9760 3.6859 13 6 -0.2389 3.6650 5.1658 14 1 0.5759 4.2474 5.5959 15 6 0.0814 2.1518 5.3130 16 1 -0.5985 1.5273 4.7336 17 6 -0.1436 1.9709 6.8231 18 6 -1.3892 2.8650 7.0690 19 7 -1.4387 3.8536 5.9666 20 6 -2.4286 4.7730 5.7432 21 1 -2.3589 5.4482 4.9032 22 6 -3.5216 4.8372 6.5965 23 7 -3.6062 4.0147 7.6205 24 14 -4.8716 6.0918 6.2922 25 1 -5.4737 5.8566 4.9552 26 1 -5.9179 5.9566 7.3373 27 1 -4.2965 7.4601 6.3423 28 6 1.5222 1.9677 4.8567 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.9309 3.9655 -1.7976 35 1 1.7505 4.5135 3.4467 36 1 1.0043 3.8151 1.9928 37 1 -1.0582 3.3124 3.2134 38 1 -0.6348 5.0140 3.5438 39 1 -0.3578 0.9295 7.0632 40 1 0.7138 2.3320 7.3910 41 1 -2.2921 2.2544 7.0609 42 1 -1.2957 3.3767 8.0268 43 1 -4.3698 4.0598 8.2170 44 1 1.8026 0.9161 4.9183 45 1 2.1895 2.5707 5.4725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036731944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:04 Heat of formation + Delta-G solvation = 23.258224 kcal Electronic energy + Delta-G solvation = -27598.621637 eV Core-core repulsion = 23935.929326 eV Total energy + Delta-G solvation = -3662.692311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81005 -40.83333 -39.51596 -36.88972 -34.63560 -34.50620 -33.07735 -31.91706 -30.71305 -29.53663 -27.26144 -26.63997 -25.06539 -24.27893 -23.87372 -22.33543 -21.81429 -21.02770 -19.57047 -19.48177 -18.50447 -17.69046 -17.36639 -16.97338 -16.55988 -16.08688 -15.81512 -15.69358 -15.50775 -15.20280 -15.06291 -14.78584 -14.66993 -14.21915 -14.15256 -13.90325 -13.48362 -13.33829 -13.17130 -13.10553 -12.98870 -12.65544 -12.55484 -12.28792 -12.21219 -12.04282 -11.96663 -11.78098 -11.62655 -11.54343 -11.25210 -11.03073 -10.72323 -10.68623 -10.38298 -9.89844 -9.75672 -8.86636 -7.82167 -5.16651 -0.72040 0.12022 0.55585 1.40227 1.46875 1.49451 1.55459 1.71396 2.00763 2.51544 3.13654 3.33674 3.36705 3.51975 3.74181 3.84298 3.95434 3.98624 4.06867 4.13244 4.17758 4.30477 4.34443 4.38557 4.46090 4.54486 4.62394 4.67098 4.72698 4.77953 4.86651 4.94075 4.95798 5.01925 5.07767 5.10359 5.17690 5.26571 5.40216 5.51646 5.52807 5.66736 5.77799 6.17014 6.21756 6.58621 6.90437 7.10409 7.80740 8.49287 9.29487 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003410 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.839031 B = 8209.672184 C = 8755.867550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C 0.134 3.866 4 N -0.498 5.498 5 C 0.037 3.963 6 S 0.227 5.773 7 C -0.324 4.324 8 C 0.596 3.404 9 O -0.558 6.558 10 N -0.601 5.601 11 C 0.110 3.890 12 C -0.120 4.120 13 C 0.159 3.841 14 H 0.028 0.972 15 C -0.109 4.109 16 H 0.060 0.940 17 C -0.121 4.121 18 C 0.182 3.818 19 N -0.615 5.615 20 C -0.231 4.231 21 H 0.088 0.912 22 C -0.068 4.068 23 N -0.954 5.954 24 Si 0.973 3.027 25 H -0.278 1.278 26 H -0.299 1.299 27 H -0.275 1.275 28 C 0.136 3.864 29 H 0.035 0.965 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.015 0.985 42 H 0.006 0.994 43 H 0.244 0.756 44 H 0.092 0.908 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.485 -0.764 -16.236 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.005 4.005 4 N -0.212 5.212 5 C -0.257 4.257 6 S 0.483 5.517 7 C -0.448 4.448 8 C 0.384 3.616 9 O -0.439 6.439 10 N -0.332 5.332 11 C -0.013 4.013 12 C -0.159 4.159 13 C 0.052 3.948 14 H 0.046 0.954 15 C -0.130 4.130 16 H 0.078 0.922 17 C -0.159 4.159 18 C 0.057 3.943 19 N -0.340 5.340 20 C -0.360 4.360 21 H 0.106 0.894 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.802 3.198 25 H -0.204 1.204 26 H -0.225 1.225 27 H -0.201 1.201 28 C 0.014 3.986 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.262 0.738 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.033 0.967 42 H 0.024 0.976 43 H 0.054 0.946 44 H 0.110 0.890 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.731 -0.471 -16.016 22.455 hybrid contribution -1.627 -0.271 0.361 1.689 sum 14.104 -0.742 -15.655 21.085 Atomic orbital electron populations 1.21627 0.93543 1.02966 1.01257 1.20373 0.96758 0.88893 1.04373 1.20723 0.95973 0.98329 0.85435 1.66150 1.16648 1.07485 1.30868 1.29516 0.98626 0.95464 1.02143 1.83914 1.57812 1.07910 1.02043 1.25383 1.19810 1.01411 0.98191 1.17021 0.77058 0.84401 0.83157 1.90760 1.52708 1.19195 1.81217 1.48217 1.59172 1.17599 1.08224 1.22161 0.94918 0.83291 1.00925 1.21847 0.96073 1.02257 0.95707 1.20857 0.88925 0.93596 0.91436 0.95412 1.22455 0.96311 0.97630 0.96576 0.92183 1.22583 0.98427 1.00020 0.94894 1.21289 0.94039 0.89263 0.89660 1.44478 1.21483 1.38905 1.29099 1.19370 0.97852 1.09635 1.09130 0.89447 1.25606 1.01079 1.01586 0.97843 1.70159 1.31101 1.41078 1.17980 0.85226 0.78761 0.79014 0.76806 1.20448 1.22541 1.20101 1.21599 0.95534 1.01818 0.79618 0.94605 0.92021 0.90377 0.88779 0.89872 0.73814 0.88729 0.88752 0.93187 0.90162 0.90473 0.90001 0.96683 0.97625 0.94636 0.88964 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.89 71.98 0.71 -2.32 16 2 C -0.06 -1.51 6.13 29.85 0.18 -1.33 16 3 C 0.13 3.22 6.04 42.09 0.25 3.47 16 4 N -0.50 -10.43 10.50 -190.40 -2.00 -12.43 16 5 C 0.04 0.50 12.22 130.60 1.60 2.10 16 6 S 0.23 3.40 20.28 -56.49 -1.15 2.26 16 7 C -0.32 -7.78 5.31 23.88 0.13 -7.65 16 8 C 0.60 17.11 7.29 86.45 0.63 17.74 16 9 O -0.56 -19.07 14.58 -4.32 -0.06 -19.14 16 10 N -0.60 -16.18 2.99 -821.86 -2.46 -18.64 16 11 C 0.11 2.63 5.38 86.83 0.47 3.09 16 12 C -0.12 -3.79 5.50 30.58 0.17 -3.63 16 13 C 0.16 6.00 2.57 45.51 0.12 6.11 16 14 H 0.03 1.05 7.92 -2.39 -0.02 1.03 16 15 C -0.11 -3.72 2.85 -9.98 -0.03 -3.74 16 16 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 17 C -0.12 -4.30 6.54 31.63 0.21 -4.09 16 18 C 0.18 8.91 5.45 86.84 0.47 9.38 16 19 N -0.62 -30.43 3.35 -669.89 -2.24 -32.68 16 20 C -0.23 -12.44 9.88 84.03 0.83 -11.61 16 21 H 0.09 4.40 7.21 -2.91 -0.02 4.38 16 22 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 23 N -0.95 -57.28 10.44 21.65 0.23 -57.06 16 24 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 C 0.14 3.77 5.97 85.90 0.51 4.29 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.08 2.25 6.19 -2.39 -0.01 2.23 16 34 H 0.25 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.97 4.74 -9.00 -0.04 1.93 16 37 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 38 H 0.08 2.51 7.62 -2.39 -0.02 2.49 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 41 H 0.01 0.83 7.21 -2.39 -0.02 0.82 16 42 H 0.01 0.30 7.77 -2.39 -0.02 0.28 16 43 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.09 2.64 6.98 -2.38 -0.02 2.62 16 45 H 0.09 2.24 8.08 -2.39 -0.02 2.22 16 Total: -1.00 -71.63 362.83 2.02 -69.61 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.96 Total: 12.49 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 6.71 Total: 8.44 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.48 Total: -120.80 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.06 Total: -19.14 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.15 Total: 2.26 kcal Total: -71.63 2.02 -69.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.870 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds