Wall clock time and date at job start Tue Mar 31 2020 18:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46573 * 2 1 4 4 N 1.30948 * 122.90408 * 269.99818 * 3 2 1 5 5 C 1.29425 * 117.36146 * 180.02562 * 4 3 2 6 6 S 1.70958 * 110.39269 * 359.72795 * 5 4 3 7 7 C 1.35663 * 122.90397 * 90.00855 * 3 2 1 8 8 C 1.46687 * 126.13114 * 359.97438 * 7 3 2 9 9 O 1.21688 * 119.99943 * 318.94768 * 8 7 3 10 10 N 1.34776 * 119.99796 * 138.94000 * 8 7 3 11 11 C 1.46529 * 120.97549 * 354.35653 * 10 8 7 12 12 C 1.51784 * 110.13313 * 233.78090 * 11 10 8 13 13 C 1.49162 * 114.92298 * 318.34843 * 12 11 10 14 14 H 1.09004 * 104.77557 * 156.85476 * 13 12 11 15 15 C 1.52642 * 117.20379 * 40.29659 * 13 12 11 16 16 H 1.09000 * 112.61834 * 82.31290 * 15 13 12 17 17 C 1.56116 * 101.80134 * 202.64765 * 15 13 12 18 18 C 1.55098 * 101.08313 * 37.66145 * 17 15 13 19 19 N 1.46255 * 114.38375 * 271.87888 * 13 12 11 20 20 C 1.36936 * 125.96593 * 316.03736 * 19 13 12 21 21 H 1.08007 * 119.99365 * 359.72537 * 20 19 13 22 22 C 1.38806 * 120.00433 * 179.71687 * 20 19 13 23 23 N 1.31622 * 119.99953 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00246 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47153 * 60.00109 * 24 22 20 26 26 H 1.48508 * 109.47127 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47133 * 300.00020 * 24 22 20 28 28 C 1.46690 * 120.97248 * 174.37548 * 10 8 7 29 29 H 1.09002 * 109.47035 * 299.99916 * 1 2 3 30 30 H 1.08995 * 109.47511 * 59.99817 * 1 2 3 31 31 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47232 * 240.00531 * 2 1 3 33 33 H 1.08998 * 109.47083 * 119.99939 * 2 1 3 34 34 H 1.08002 * 124.80512 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.36077 * 353.98350 * 11 10 8 36 36 H 1.08992 * 109.35996 * 113.72001 * 11 10 8 37 37 H 1.09010 * 108.35887 * 79.85782 * 12 11 10 38 38 H 1.09003 * 108.36356 * 197.13304 * 12 11 10 39 39 H 1.09002 * 111.09686 * 279.70502 * 17 15 13 40 40 H 1.09002 * 111.09758 * 155.61661 * 17 15 13 41 41 H 1.09003 * 110.35042 * 204.08096 * 18 17 15 42 42 H 1.09001 * 110.35155 * 81.80053 * 18 17 15 43 43 H 0.96995 * 120.00159 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.53319 * 1.25856 * 28 10 8 45 45 H 1.09009 * 109.52853 * 241.04643 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2693 2.0916 -1.0994 5 6 2.6991 3.3060 -0.9744 6 16 2.8384 3.7215 0.6781 7 6 2.2780 2.1157 1.1390 8 6 2.1027 1.6210 2.5088 9 8 1.1301 0.9470 2.7925 10 7 3.0192 1.9127 3.4530 11 6 4.2577 2.6166 3.1099 12 6 5.4591 1.8298 3.6013 13 6 5.3072 1.2342 4.9604 14 1 6.0139 0.4046 4.9809 15 6 3.9514 0.6253 5.3080 16 1 3.8386 -0.3906 4.9292 17 6 3.9699 0.6742 6.8682 18 6 4.6842 2.0285 7.1156 19 7 5.7092 2.1172 6.0549 20 6 6.8359 2.8948 6.0884 21 1 7.5232 2.8858 5.2553 22 6 7.0945 3.6948 7.1929 23 7 6.2571 3.7055 8.2083 24 14 8.6310 4.7561 7.2383 25 1 8.6067 5.7112 6.1015 26 1 8.6748 5.5093 8.5175 27 1 9.8334 3.8910 7.1324 28 6 2.8061 1.5345 4.8542 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9318 3.9654 -1.7975 35 1 4.3196 2.7324 2.0278 36 1 4.2561 3.6003 3.5791 37 1 5.6567 1.0261 2.8918 38 1 6.3229 2.4944 3.6142 39 1 4.5462 -0.1544 7.2799 40 1 2.9577 0.6848 7.2725 41 1 5.1546 2.0349 8.0989 42 1 3.9758 2.8522 7.0280 43 1 6.4376 4.2647 8.9800 44 1 1.8594 1.0026 4.9482 45 1 2.7848 2.4308 5.4743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036731945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:09 Heat of formation + Delta-G solvation = 44.203653 kcal Electronic energy + Delta-G solvation = -27773.703533 eV Core-core repulsion = 24111.919484 eV Total energy + Delta-G solvation = -3661.784049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65887 -39.70712 -38.12998 -35.28367 -33.60205 -32.89510 -31.88034 -30.38357 -29.17640 -27.78100 -26.39281 -25.15373 -24.04683 -23.38245 -22.69571 -21.26593 -20.16108 -19.03748 -18.59850 -17.99458 -16.88355 -16.38035 -16.20824 -15.62108 -15.25261 -14.80670 -14.57816 -14.32113 -14.19263 -14.02192 -13.91813 -13.68413 -13.10255 -12.90339 -12.66235 -12.46233 -12.17540 -12.03519 -11.80105 -11.54776 -11.34238 -11.25131 -11.05663 -10.98166 -10.80179 -10.60334 -10.25731 -10.20430 -10.10459 -9.96962 -9.81808 -9.70523 -9.59325 -9.40597 -8.99225 -8.67572 -8.35511 -6.86266 -5.72632 -3.11921 0.17367 0.99851 1.41487 2.37622 2.90975 3.18977 3.35453 3.40360 3.41625 3.94006 4.42566 4.52190 4.81359 4.86960 5.03415 5.20336 5.21776 5.29622 5.33702 5.38217 5.40824 5.45201 5.51296 5.65777 5.76930 5.85440 5.87368 5.88153 6.03905 6.07572 6.13971 6.23489 6.26419 6.27657 6.38785 6.54638 6.59431 6.67521 6.88230 6.91905 7.40402 7.45197 7.52823 7.57320 7.80225 8.13976 8.28495 9.15368 9.77732 10.44226 11.33262 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.003633 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.694425 B = 7704.359217 C = 8794.240374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C 0.132 3.868 4 N -0.471 5.471 5 C 0.016 3.984 6 S 0.184 5.816 7 C -0.281 4.281 8 C 0.594 3.406 9 O -0.528 6.528 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.134 4.134 13 C 0.172 3.828 14 H 0.008 0.992 15 C -0.105 4.105 16 H 0.078 0.922 17 C -0.142 4.142 18 C 0.156 3.844 19 N -0.592 5.592 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.122 3.878 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.204 0.796 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.014 0.986 43 H 0.253 0.747 44 H 0.087 0.913 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 -2.529 -14.903 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.005 4.005 4 N -0.185 5.185 5 C -0.279 4.279 6 S 0.440 5.560 7 C -0.405 4.405 8 C 0.380 3.620 9 O -0.406 6.406 10 N -0.325 5.325 11 C -0.016 4.016 12 C -0.174 4.174 13 C 0.064 3.936 14 H 0.026 0.974 15 C -0.125 4.125 16 H 0.096 0.904 17 C -0.182 4.182 18 C 0.032 3.968 19 N -0.317 5.317 20 C -0.352 4.352 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.001 3.999 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.220 0.780 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.032 0.968 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.160 -1.947 -14.622 16.857 hybrid contribution 0.770 0.051 -0.200 0.797 sum -7.390 -1.896 -14.821 16.670 Atomic orbital electron populations 1.21676 0.93561 1.02120 1.02536 1.20178 0.97042 0.88288 1.03352 1.20601 0.96547 0.98388 0.85001 1.66082 1.14874 1.06281 1.31252 1.28744 1.01787 0.96197 1.01179 1.84307 1.57680 1.11961 1.02028 1.25539 1.16324 0.99324 0.99329 1.16706 0.82956 0.80043 0.82324 1.90793 1.30386 1.38938 1.80490 1.47859 1.19126 1.56917 1.08575 1.21579 0.83718 0.96478 0.99778 1.21197 0.97872 1.00113 0.98187 1.19320 0.93226 0.92945 0.88080 0.97397 1.22292 0.94697 0.97946 0.97583 0.90395 1.23295 1.00197 1.01495 0.93170 1.21923 0.89474 0.89741 0.95691 1.44486 1.22958 1.50627 1.13629 1.18919 0.97135 1.17144 1.02001 0.90526 1.24751 0.98697 1.00093 0.96767 1.69830 1.36525 1.42800 1.07608 0.86209 0.82566 0.80159 0.76879 1.21227 1.21601 1.21183 1.21769 0.99074 0.99760 0.79340 0.91194 0.92987 0.92064 0.90228 0.89814 0.77982 0.90866 0.90608 0.93114 0.89682 0.91827 0.91965 0.88306 0.96795 0.93654 0.89456 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.83 37.16 0.37 -1.23 16 2 C -0.05 -0.59 5.70 -27.88 -0.16 -0.75 16 3 C 0.13 1.74 6.04 -83.89 -0.51 1.23 16 4 N -0.47 -5.79 10.50 -11.53 -0.12 -5.91 16 5 C 0.02 0.15 12.22 51.75 0.63 0.79 16 6 S 0.18 1.96 20.33 -107.50 -2.19 -0.22 16 7 C -0.28 -3.86 5.39 -37.09 -0.20 -4.06 16 8 C 0.59 9.41 7.08 -12.85 -0.09 9.32 16 9 O -0.53 -9.32 14.32 5.20 0.07 -9.24 16 10 N -0.59 -9.44 2.94 -175.72 -0.52 -9.96 16 11 C 0.11 1.66 5.75 -4.64 -0.03 1.63 16 12 C -0.13 -2.28 5.60 -29.24 -0.16 -2.44 16 13 C 0.17 3.37 2.61 -70.13 -0.18 3.19 16 14 H 0.01 0.18 8.05 -51.93 -0.42 -0.24 16 15 C -0.11 -1.82 3.70 -89.08 -0.33 -2.15 16 16 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.14 -2.58 6.47 -23.95 -0.15 -2.73 16 18 C 0.16 3.57 5.35 -2.23 -0.01 3.56 16 19 N -0.59 -14.01 3.32 -165.90 -0.55 -14.56 16 20 C -0.22 -5.80 9.59 -15.06 -0.14 -5.95 16 21 H 0.08 1.91 7.02 -52.48 -0.37 1.54 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -25.69 10.18 55.49 0.56 -25.12 16 24 Si 0.91 21.17 29.55 -169.99 -5.02 16.14 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.12 2.03 5.54 -3.88 -0.02 2.01 16 29 H 0.07 0.93 7.05 -51.93 -0.37 0.56 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.08 7.25 -51.93 -0.38 0.71 16 34 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.07 0.98 4.55 -39.41 -0.18 0.80 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.08 1.55 6.62 -51.93 -0.34 1.20 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16 41 H 0.10 2.58 6.09 -51.93 -0.32 2.26 16 42 H 0.01 0.34 7.10 -51.93 -0.37 -0.03 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.09 1.42 7.01 -51.93 -0.36 1.05 16 45 H 0.08 1.45 6.49 -51.92 -0.34 1.11 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -29.95 357.42 -9.83 -39.78 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.37 Total: 1.58 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.09 Total: 2.12 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.62 Total: -55.55 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.19 Total: -0.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.95 -9.83 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.988 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds