Wall clock time and date at job start Tue Mar 31 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46573 * 2 1 4 4 N 1.30948 * 122.90408 * 269.99818 * 3 2 1 5 5 C 1.29425 * 117.36146 * 180.02562 * 4 3 2 6 6 S 1.70958 * 110.39269 * 359.72795 * 5 4 3 7 7 C 1.35663 * 122.90397 * 90.00855 * 3 2 1 8 8 C 1.46687 * 126.13114 * 359.97438 * 7 3 2 9 9 O 1.21688 * 119.99943 * 318.94768 * 8 7 3 10 10 N 1.34776 * 119.99796 * 138.94000 * 8 7 3 11 11 C 1.46529 * 120.97549 * 354.35653 * 10 8 7 12 12 C 1.51784 * 110.13313 * 233.78090 * 11 10 8 13 13 C 1.49162 * 114.92298 * 318.34843 * 12 11 10 14 14 H 1.09004 * 104.77557 * 156.85476 * 13 12 11 15 15 C 1.52642 * 117.20379 * 40.29659 * 13 12 11 16 16 H 1.09000 * 112.61834 * 82.31290 * 15 13 12 17 17 C 1.56116 * 101.80134 * 202.64765 * 15 13 12 18 18 C 1.55098 * 101.08313 * 37.66145 * 17 15 13 19 19 N 1.46255 * 114.38375 * 271.87888 * 13 12 11 20 20 C 1.36936 * 125.96593 * 316.03736 * 19 13 12 21 21 H 1.08007 * 119.99365 * 359.72537 * 20 19 13 22 22 C 1.38806 * 120.00433 * 179.71687 * 20 19 13 23 23 N 1.31622 * 119.99953 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00246 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47153 * 60.00109 * 24 22 20 26 26 H 1.48508 * 109.47127 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47133 * 300.00020 * 24 22 20 28 28 C 1.46690 * 120.97248 * 174.37548 * 10 8 7 29 29 H 1.09002 * 109.47035 * 299.99916 * 1 2 3 30 30 H 1.08995 * 109.47511 * 59.99817 * 1 2 3 31 31 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47232 * 240.00531 * 2 1 3 33 33 H 1.08998 * 109.47083 * 119.99939 * 2 1 3 34 34 H 1.08002 * 124.80512 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.36077 * 353.98350 * 11 10 8 36 36 H 1.08992 * 109.35996 * 113.72001 * 11 10 8 37 37 H 1.09010 * 108.35887 * 79.85782 * 12 11 10 38 38 H 1.09003 * 108.36356 * 197.13304 * 12 11 10 39 39 H 1.09002 * 111.09686 * 279.70502 * 17 15 13 40 40 H 1.09002 * 111.09758 * 155.61661 * 17 15 13 41 41 H 1.09003 * 110.35042 * 204.08096 * 18 17 15 42 42 H 1.09001 * 110.35155 * 81.80053 * 18 17 15 43 43 H 0.96995 * 120.00159 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.53319 * 1.25856 * 28 10 8 45 45 H 1.09009 * 109.52853 * 241.04643 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2693 2.0916 -1.0994 5 6 2.6991 3.3060 -0.9744 6 16 2.8384 3.7215 0.6781 7 6 2.2780 2.1157 1.1390 8 6 2.1027 1.6210 2.5088 9 8 1.1301 0.9470 2.7925 10 7 3.0192 1.9127 3.4530 11 6 4.2577 2.6166 3.1099 12 6 5.4591 1.8298 3.6013 13 6 5.3072 1.2342 4.9604 14 1 6.0139 0.4046 4.9809 15 6 3.9514 0.6253 5.3080 16 1 3.8386 -0.3906 4.9292 17 6 3.9699 0.6742 6.8682 18 6 4.6842 2.0285 7.1156 19 7 5.7092 2.1172 6.0549 20 6 6.8359 2.8948 6.0884 21 1 7.5232 2.8858 5.2553 22 6 7.0945 3.6948 7.1929 23 7 6.2571 3.7055 8.2083 24 14 8.6310 4.7561 7.2383 25 1 8.6067 5.7112 6.1015 26 1 8.6748 5.5093 8.5175 27 1 9.8334 3.8910 7.1324 28 6 2.8061 1.5345 4.8542 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9318 3.9654 -1.7975 35 1 4.3196 2.7324 2.0278 36 1 4.2561 3.6003 3.5791 37 1 5.6567 1.0261 2.8918 38 1 6.3229 2.4944 3.6142 39 1 4.5462 -0.1544 7.2799 40 1 2.9577 0.6848 7.2725 41 1 5.1546 2.0349 8.0989 42 1 3.9758 2.8522 7.0280 43 1 6.4376 4.2647 8.9800 44 1 1.8594 1.0026 4.9482 45 1 2.7848 2.4308 5.4743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036731945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:08 Heat of formation + Delta-G solvation = 26.576110 kcal Electronic energy + Delta-G solvation = -27774.467921 eV Core-core repulsion = 24111.919484 eV Total energy + Delta-G solvation = -3662.548436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81149 -40.87089 -39.51025 -36.73279 -34.68588 -34.48278 -33.41119 -31.66846 -30.68521 -29.26820 -27.46828 -26.67717 -25.59072 -24.31147 -24.09335 -22.44513 -21.89197 -20.35446 -19.52498 -19.35669 -18.37973 -17.73438 -17.46901 -17.06136 -16.56566 -16.26263 -15.78145 -15.61846 -15.55730 -15.24839 -15.03135 -14.67683 -14.61563 -14.27370 -14.08313 -13.87532 -13.40610 -13.31909 -13.07843 -13.02378 -12.91353 -12.72844 -12.50395 -12.22939 -12.22351 -12.00304 -11.88862 -11.70378 -11.60955 -11.44325 -11.32276 -11.21284 -10.75759 -10.65699 -10.41696 -9.89048 -9.67526 -8.79411 -7.74314 -5.14756 -0.72531 0.10499 0.55680 1.40531 1.49522 1.51308 1.57433 1.75242 2.01316 2.52347 3.12163 3.35669 3.39865 3.63927 3.73070 3.80376 3.94210 3.99276 4.07176 4.07884 4.19827 4.36487 4.39916 4.41464 4.46745 4.57344 4.59020 4.70881 4.74254 4.85434 4.90068 4.96846 5.00718 5.06994 5.12764 5.17396 5.26871 5.35096 5.38205 5.46325 5.54307 5.68096 5.85854 6.25213 6.33301 6.56196 6.91962 7.14983 7.83902 8.50015 9.30066 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.003633 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.694425 B = 7704.359217 C = 8794.240374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 C 0.136 3.864 4 N -0.494 5.494 5 C 0.042 3.958 6 S 0.204 5.796 7 C -0.319 4.319 8 C 0.597 3.403 9 O -0.551 6.551 10 N -0.596 5.596 11 C 0.117 3.883 12 C -0.130 4.130 13 C 0.168 3.832 14 H -0.003 1.003 15 C -0.094 4.094 16 H 0.098 0.902 17 C -0.129 4.129 18 C 0.161 3.839 19 N -0.609 5.609 20 C -0.227 4.227 21 H 0.084 0.916 22 C -0.064 4.064 23 N -0.949 5.949 24 Si 0.972 3.028 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.280 1.280 28 C 0.129 3.871 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.246 0.754 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.063 0.937 42 H -0.008 1.008 43 H 0.245 0.755 44 H 0.094 0.906 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 -2.585 -17.764 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 C -0.003 4.003 4 N -0.207 5.207 5 C -0.253 4.253 6 S 0.460 5.540 7 C -0.443 4.443 8 C 0.384 3.616 9 O -0.431 6.431 10 N -0.327 5.327 11 C -0.007 4.007 12 C -0.170 4.170 13 C 0.061 3.939 14 H 0.014 0.986 15 C -0.114 4.114 16 H 0.116 0.884 17 C -0.168 4.168 18 C 0.036 3.964 19 N -0.334 5.334 20 C -0.356 4.356 21 H 0.102 0.898 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.801 3.199 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.207 1.207 28 C 0.007 3.993 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.262 0.738 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.010 0.990 43 H 0.054 0.946 44 H 0.112 0.888 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.146 -2.013 -17.518 19.424 hybrid contribution 0.754 0.072 0.587 0.958 sum -7.392 -1.941 -16.932 18.577 Atomic orbital electron populations 1.21602 0.93139 1.02867 1.01554 1.20219 0.97358 0.88141 1.03382 1.20793 0.95529 0.98762 0.85168 1.66160 1.16476 1.07376 1.30733 1.29509 0.98492 0.95546 1.01717 1.84253 1.57217 1.09870 1.02657 1.25355 1.19294 1.01406 0.98234 1.16940 0.82245 0.79368 0.83011 1.90771 1.31132 1.39991 1.81175 1.47841 1.19426 1.57162 1.08303 1.21502 0.82827 0.95293 1.01033 1.21091 0.98204 1.00623 0.97039 1.19521 0.94136 0.91885 0.88330 0.98561 1.22252 0.93625 0.98865 0.96673 0.88392 1.23155 1.00912 0.98522 0.94184 1.21678 0.88996 0.91716 0.93998 1.44713 1.22717 1.50638 1.15340 1.19286 0.97839 1.16641 1.01839 0.89839 1.25509 1.01489 1.01871 0.96794 1.70077 1.38138 1.43641 1.07985 0.85241 0.79526 0.78637 0.76475 1.20213 1.22541 1.20655 1.21588 0.99014 0.98858 0.79836 0.93476 0.92479 0.90524 0.88821 0.91050 0.73764 0.88494 0.92012 0.91077 0.90880 0.91519 0.89569 0.91936 0.98973 0.94582 0.88819 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.83 71.98 0.71 -2.15 16 2 C -0.05 -1.16 5.70 29.85 0.17 -0.99 16 3 C 0.14 3.31 6.04 42.09 0.25 3.57 16 4 N -0.49 -10.65 10.50 -190.39 -2.00 -12.65 16 5 C 0.04 0.64 12.22 130.60 1.60 2.24 16 6 S 0.20 3.81 20.33 -56.49 -1.15 2.66 16 7 C -0.32 -8.24 5.39 23.88 0.13 -8.11 16 8 C 0.60 18.35 7.08 86.45 0.61 18.96 16 9 O -0.55 -19.19 14.32 -4.31 -0.06 -19.25 16 10 N -0.60 -18.44 2.94 -828.07 -2.44 -20.88 16 11 C 0.12 3.45 5.75 85.97 0.49 3.95 16 12 C -0.13 -4.29 5.60 28.97 0.16 -4.12 16 13 C 0.17 6.51 2.61 43.70 0.11 6.63 16 14 H 0.00 -0.14 8.05 -2.38 -0.02 -0.15 16 15 C -0.09 -3.17 3.70 -9.79 -0.04 -3.21 16 16 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 17 C -0.13 -4.62 6.47 32.39 0.21 -4.41 16 18 C 0.16 7.59 5.35 86.85 0.46 8.05 16 19 N -0.61 -29.31 3.32 -678.78 -2.25 -31.56 16 20 C -0.23 -11.93 9.59 84.03 0.81 -11.12 16 21 H 0.08 4.16 7.02 -2.91 -0.02 4.14 16 22 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 23 N -0.95 -54.92 10.18 21.65 0.22 -54.70 16 24 Si 0.97 44.08 29.55 68.60 2.03 46.10 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 C 0.13 4.22 5.54 86.38 0.48 4.70 16 29 H 0.05 1.22 7.05 -2.39 -0.02 1.21 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.78 7.25 -2.39 -0.02 1.76 16 34 H 0.25 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.10 2.40 4.55 -10.35 -0.05 2.36 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.07 2.60 6.62 -2.39 -0.02 2.58 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.09 2.68 7.98 -2.39 -0.02 2.66 16 41 H 0.06 3.42 6.09 -2.39 -0.01 3.40 16 42 H -0.01 -0.39 7.10 -2.39 -0.02 -0.40 16 43 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.09 2.96 7.01 -2.39 -0.02 2.94 16 45 H 0.06 2.29 6.49 -2.38 -0.02 2.27 16 Total: -1.00 -66.39 357.42 1.95 -64.45 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.97 Total: 14.85 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.63 Total: 10.97 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -6.47 Total: -119.78 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.15 Total: 2.66 kcal Total: -66.39 1.95 -64.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.022 kcal (2) G-P(sol) polarization free energy of solvation -66.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds