Wall clock time and date at job start Tue Mar 31 2020 18:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46596 * 2 1 4 4 N 1.30945 * 122.90263 * 269.99307 * 3 2 1 5 5 C 1.29432 * 117.36046 * 180.02562 * 4 3 2 6 6 S 1.70951 * 110.39377 * 359.72873 * 5 4 3 7 7 C 1.35662 * 122.90482 * 90.00412 * 3 2 1 8 8 C 1.46680 * 126.13277 * 359.97438 * 7 3 2 9 9 O 1.21689 * 120.00004 * 42.08607 * 8 7 3 10 10 N 1.34773 * 120.00220 * 222.09006 * 8 7 3 11 11 C 1.46783 * 120.19751 * 176.04880 * 10 8 7 12 12 C 1.52961 * 107.45329 * 234.23701 * 11 10 8 13 13 C 1.53011 * 109.94769 * 298.79257 * 12 11 10 14 14 H 1.08999 * 110.43292 * 291.10140 * 13 12 11 15 15 C 1.52570 * 111.96720 * 54.61305 * 13 12 11 16 16 H 1.09000 * 107.36412 * 202.44737 * 15 13 12 17 17 C 1.54380 * 103.70289 * 89.17571 * 15 13 12 18 18 C 1.55271 * 100.52902 * 38.62600 * 17 15 13 19 19 N 1.47502 * 105.09713 * 323.72213 * 18 17 15 20 20 C 1.36939 * 125.59474 * 200.37636 * 19 18 17 21 21 H 1.08001 * 120.00029 * 179.97438 * 20 19 18 22 22 C 1.38808 * 119.99940 * 359.94188 * 20 19 18 23 23 N 1.31617 * 120.00211 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99743 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47293 * 90.00667 * 24 22 20 26 26 H 1.48505 * 109.46871 * 210.00300 * 24 22 20 27 27 H 1.48495 * 109.47472 * 330.00178 * 24 22 20 28 28 C 1.44727 * 119.88483 * 356.79648 * 10 8 7 29 29 H 1.09009 * 109.46611 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47222 * 299.99865 * 1 2 3 31 31 H 1.08994 * 109.47294 * 60.00318 * 1 2 3 32 32 H 1.08994 * 109.47222 * 240.00135 * 2 1 3 33 33 H 1.09001 * 109.46992 * 119.99811 * 2 1 3 34 34 H 1.07999 * 124.79968 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.85809 * 114.75106 * 11 10 8 36 36 H 1.09000 * 109.85844 * 353.72485 * 11 10 8 37 37 H 1.09004 * 109.39184 * 178.64629 * 12 11 10 38 38 H 1.09002 * 109.31372 * 58.88672 * 12 11 10 39 39 H 1.09001 * 111.21550 * 156.45805 * 17 15 13 40 40 H 1.09005 * 111.21172 * 280.79671 * 17 15 13 41 41 H 1.09003 * 110.31652 * 82.59601 * 18 17 15 42 42 H 1.09006 * 110.31059 * 204.76959 * 18 17 15 43 43 H 0.96999 * 119.99941 * 179.97438 * 23 22 20 44 44 H 1.09000 * 109.34580 * 20.98338 * 28 10 8 45 45 H 1.09007 * 106.98879 * 264.00810 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2694 2.0915 -1.0994 5 6 2.6992 3.3059 -0.9744 6 16 2.8384 3.7215 0.6780 7 6 2.2779 2.1157 1.1390 8 6 2.1026 1.6211 2.5087 9 8 2.4522 0.4917 2.7972 10 7 1.5543 2.4173 3.4477 11 6 1.2972 1.8990 4.7967 12 6 -0.1785 2.1501 5.1112 13 6 -0.4697 3.6520 5.0840 14 1 0.0174 4.1493 5.9228 15 6 -0.0452 4.2920 3.7657 16 1 0.1002 5.3560 3.9525 17 6 -1.2961 4.1522 2.8718 18 6 -2.4181 4.4301 3.9085 19 7 -1.9407 3.8205 5.1639 20 6 -2.7272 3.4672 6.2278 21 1 -2.2807 3.0248 7.1061 22 6 -4.0982 3.6782 6.1777 23 7 -4.6424 4.2175 5.1075 24 14 -5.1709 3.1969 7.6294 25 1 -5.2793 4.3437 8.5665 26 1 -6.5241 2.8254 7.1432 27 1 -4.5623 2.0390 8.3322 28 6 1.2033 3.7826 3.1201 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9319 3.9652 -1.7976 35 1 1.9240 2.4211 5.5197 36 1 1.5059 0.8296 4.8285 37 1 -0.4103 1.7544 6.1000 38 1 -0.7963 1.6482 4.3665 39 1 -1.2989 4.8991 2.0778 40 1 -1.3779 3.1453 2.4625 41 1 -2.5562 5.5036 4.0381 42 1 -3.3507 3.9635 3.5909 43 1 -5.6006 4.3646 5.0724 44 1 1.0964 3.8785 2.0396 45 1 2.0360 4.4104 3.4371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036731946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:12 Heat of formation + Delta-G solvation = 43.806850 kcal Electronic energy + Delta-G solvation = -27930.449037 eV Core-core repulsion = 24268.647781 eV Total energy + Delta-G solvation = -3661.801255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75764 -39.74972 -38.17960 -35.42327 -33.62492 -32.68098 -32.20642 -30.13462 -29.31782 -28.18332 -26.38757 -25.04353 -23.63273 -23.44360 -22.83539 -21.16581 -20.29861 -19.22143 -18.62081 -17.91258 -16.96451 -16.87789 -16.20745 -15.60449 -15.10268 -14.89635 -14.69125 -14.49253 -14.22949 -13.91378 -13.82288 -13.58226 -13.23939 -12.99565 -12.60570 -12.47973 -12.27622 -12.07462 -11.96919 -11.58046 -11.34771 -11.32841 -11.06500 -11.00591 -10.88138 -10.77511 -10.26485 -10.16191 -10.05186 -9.92515 -9.81134 -9.63678 -9.60196 -9.41451 -9.01482 -8.69893 -8.50684 -6.89160 -5.69729 -3.09340 0.14912 0.96082 1.36446 2.35352 2.79811 3.14757 3.37884 3.43290 3.44958 3.93775 4.42731 4.47065 4.76288 4.80100 4.88680 5.11491 5.17494 5.27943 5.29435 5.34493 5.40847 5.44233 5.51669 5.59769 5.77072 5.82334 5.87733 5.88839 5.90034 5.95191 6.08140 6.18258 6.24243 6.28956 6.34656 6.46796 6.57684 6.63061 6.84096 7.03079 7.32802 7.45629 7.47381 7.59102 7.81047 8.05029 8.28316 9.17923 9.78378 10.43441 11.36063 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.003470 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.168891 B = 8067.679331 C = 8140.246806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C 0.138 3.862 4 N -0.470 5.470 5 C 0.019 3.981 6 S 0.176 5.824 7 C -0.284 4.284 8 C 0.596 3.404 9 O -0.528 6.528 10 N -0.588 5.588 11 C 0.113 3.887 12 C -0.139 4.139 13 C 0.172 3.828 14 H 0.041 0.959 15 C -0.107 4.107 16 H 0.075 0.925 17 C -0.139 4.139 18 C 0.161 3.839 19 N -0.600 5.600 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.117 3.883 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.204 0.796 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.095 0.905 43 H 0.252 0.748 44 H 0.080 0.920 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.351 -0.358 -10.727 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C 0.001 3.999 4 N -0.183 5.183 5 C -0.276 4.276 6 S 0.432 5.568 7 C -0.408 4.408 8 C 0.382 3.618 9 O -0.406 6.406 10 N -0.320 5.320 11 C -0.009 4.009 12 C -0.179 4.179 13 C 0.064 3.936 14 H 0.059 0.941 15 C -0.127 4.127 16 H 0.093 0.907 17 C -0.178 4.178 18 C 0.036 3.964 19 N -0.324 5.324 20 C -0.350 4.350 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.008 4.008 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.220 0.780 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.113 0.887 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.544 -0.142 -10.523 18.771 hybrid contribution -0.904 -0.621 0.586 1.243 sum 14.640 -0.763 -9.937 17.710 Atomic orbital electron populations 1.21691 0.93699 1.02410 1.02302 1.20402 0.96640 0.88571 1.04666 1.20594 0.96269 0.98117 0.84930 1.66099 1.14835 1.06168 1.31236 1.28756 1.01714 0.96106 1.01069 1.84122 1.59087 1.11164 1.02420 1.25461 1.17420 0.98622 0.99266 1.16733 0.78000 0.84772 0.82304 1.90784 1.51011 1.18631 1.80201 1.47432 1.59811 1.12811 1.11955 1.21761 0.97719 1.00501 0.80888 1.22402 0.93125 0.99841 1.02577 1.20611 0.87085 0.92451 0.93410 0.94077 1.21125 0.93729 1.00540 0.97285 0.90698 1.23038 0.96334 1.00472 0.97945 1.21813 0.95348 0.96020 0.83217 1.44900 0.99518 1.72286 1.15732 1.19027 0.88404 1.33830 0.93703 0.90506 1.24765 0.96645 1.01229 0.97859 1.69858 1.10502 1.49328 1.27354 0.86117 0.80062 0.78053 0.81533 1.21681 1.21707 1.20689 1.20696 0.97442 0.81858 1.00792 0.91607 0.92477 0.92422 0.89915 0.88213 0.77959 0.91296 0.89083 0.90858 0.91407 0.92213 0.92406 0.96632 0.88670 0.93778 0.90259 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 37.16 0.37 -1.37 16 2 C -0.06 -0.79 6.13 -27.88 -0.17 -0.96 16 3 C 0.14 1.84 6.04 -83.89 -0.51 1.33 16 4 N -0.47 -5.76 10.50 -11.53 -0.12 -5.88 16 5 C 0.02 0.17 12.22 51.75 0.63 0.81 16 6 S 0.18 1.70 20.03 -107.50 -2.15 -0.45 16 7 C -0.28 -3.79 5.43 -37.10 -0.20 -3.99 16 8 C 0.60 9.13 7.28 -12.85 -0.09 9.03 16 9 O -0.53 -9.27 14.65 5.20 0.08 -9.19 16 10 N -0.59 -8.60 2.99 -178.51 -0.53 -9.14 16 11 C 0.11 1.68 6.43 -3.91 -0.03 1.65 16 12 C -0.14 -2.46 5.25 -26.75 -0.14 -2.60 16 13 C 0.17 3.28 3.36 -67.16 -0.23 3.05 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.11 -1.72 2.51 -91.85 -0.23 -1.95 16 16 H 0.07 1.16 8.12 -51.93 -0.42 0.73 16 17 C -0.14 -2.50 6.43 -24.80 -0.16 -2.66 16 18 C 0.16 3.74 5.73 -2.29 -0.01 3.72 16 19 N -0.60 -14.43 3.08 -162.35 -0.50 -14.93 16 20 C -0.22 -5.90 9.95 -15.06 -0.15 -6.05 16 21 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -26.33 10.16 55.49 0.56 -25.77 16 24 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 C 0.12 1.56 4.79 -6.72 -0.03 1.53 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.38 6.22 -51.93 -0.32 1.05 16 34 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 2.53 6.13 -51.93 -0.32 2.21 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.08 1.00 4.43 -37.82 -0.17 0.83 16 45 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -31.17 363.04 -9.90 -41.08 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.64 Total: 0.94 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.05 Total: 1.19 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.59 Total: -55.72 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.15 Total: -0.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.17 -9.90 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.883 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds