Wall clock time and date at job start Tue Mar 31 2020 18:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46596 * 2 1 4 4 N 1.30945 * 122.90263 * 269.99307 * 3 2 1 5 5 C 1.29432 * 117.36046 * 180.02562 * 4 3 2 6 6 S 1.70951 * 110.39377 * 359.72873 * 5 4 3 7 7 C 1.35662 * 122.90482 * 90.00412 * 3 2 1 8 8 C 1.46680 * 126.13277 * 359.97438 * 7 3 2 9 9 O 1.21689 * 120.00004 * 42.08607 * 8 7 3 10 10 N 1.34773 * 120.00220 * 222.09006 * 8 7 3 11 11 C 1.46783 * 120.19751 * 176.04880 * 10 8 7 12 12 C 1.52961 * 107.45329 * 234.23701 * 11 10 8 13 13 C 1.53011 * 109.94769 * 298.79257 * 12 11 10 14 14 H 1.08999 * 110.43292 * 291.10140 * 13 12 11 15 15 C 1.52570 * 111.96720 * 54.61305 * 13 12 11 16 16 H 1.09000 * 107.36412 * 202.44737 * 15 13 12 17 17 C 1.54380 * 103.70289 * 89.17571 * 15 13 12 18 18 C 1.55271 * 100.52902 * 38.62600 * 17 15 13 19 19 N 1.47502 * 105.09713 * 323.72213 * 18 17 15 20 20 C 1.36939 * 125.59474 * 200.37636 * 19 18 17 21 21 H 1.08001 * 120.00029 * 179.97438 * 20 19 18 22 22 C 1.38808 * 119.99940 * 359.94188 * 20 19 18 23 23 N 1.31617 * 120.00211 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99743 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47293 * 90.00667 * 24 22 20 26 26 H 1.48505 * 109.46871 * 210.00300 * 24 22 20 27 27 H 1.48495 * 109.47472 * 330.00178 * 24 22 20 28 28 C 1.44727 * 119.88483 * 356.79648 * 10 8 7 29 29 H 1.09009 * 109.46611 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47222 * 299.99865 * 1 2 3 31 31 H 1.08994 * 109.47294 * 60.00318 * 1 2 3 32 32 H 1.08994 * 109.47222 * 240.00135 * 2 1 3 33 33 H 1.09001 * 109.46992 * 119.99811 * 2 1 3 34 34 H 1.07999 * 124.79968 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.85809 * 114.75106 * 11 10 8 36 36 H 1.09000 * 109.85844 * 353.72485 * 11 10 8 37 37 H 1.09004 * 109.39184 * 178.64629 * 12 11 10 38 38 H 1.09002 * 109.31372 * 58.88672 * 12 11 10 39 39 H 1.09001 * 111.21550 * 156.45805 * 17 15 13 40 40 H 1.09005 * 111.21172 * 280.79671 * 17 15 13 41 41 H 1.09003 * 110.31652 * 82.59601 * 18 17 15 42 42 H 1.09006 * 110.31059 * 204.76959 * 18 17 15 43 43 H 0.96999 * 119.99941 * 179.97438 * 23 22 20 44 44 H 1.09000 * 109.34580 * 20.98338 * 28 10 8 45 45 H 1.09007 * 106.98879 * 264.00810 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2694 2.0915 -1.0994 5 6 2.6992 3.3059 -0.9744 6 16 2.8384 3.7215 0.6780 7 6 2.2779 2.1157 1.1390 8 6 2.1026 1.6211 2.5087 9 8 2.4522 0.4917 2.7972 10 7 1.5543 2.4173 3.4477 11 6 1.2972 1.8990 4.7967 12 6 -0.1785 2.1501 5.1112 13 6 -0.4697 3.6520 5.0840 14 1 0.0174 4.1493 5.9228 15 6 -0.0452 4.2920 3.7657 16 1 0.1002 5.3560 3.9525 17 6 -1.2961 4.1522 2.8718 18 6 -2.4181 4.4301 3.9085 19 7 -1.9407 3.8205 5.1639 20 6 -2.7272 3.4672 6.2278 21 1 -2.2807 3.0248 7.1061 22 6 -4.0982 3.6782 6.1777 23 7 -4.6424 4.2175 5.1075 24 14 -5.1709 3.1969 7.6294 25 1 -5.2793 4.3437 8.5665 26 1 -6.5241 2.8254 7.1432 27 1 -4.5623 2.0390 8.3322 28 6 1.2033 3.7826 3.1201 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9319 3.9652 -1.7976 35 1 1.9240 2.4211 5.5197 36 1 1.5059 0.8296 4.8285 37 1 -0.4103 1.7544 6.1000 38 1 -0.7963 1.6482 4.3665 39 1 -1.2989 4.8991 2.0778 40 1 -1.3779 3.1453 2.4625 41 1 -2.5562 5.5036 4.0381 42 1 -3.3507 3.9635 3.5909 43 1 -5.6006 4.3646 5.0724 44 1 1.0964 3.8785 2.0396 45 1 2.0360 4.4104 3.4371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036731946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:11 Heat of formation + Delta-G solvation = 24.863582 kcal Electronic energy + Delta-G solvation = -27931.270478 eV Core-core repulsion = 24268.647781 eV Total energy + Delta-G solvation = -3662.622697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85440 -40.82206 -39.53339 -36.86396 -34.59238 -34.44258 -33.59230 -31.59106 -30.61326 -29.71470 -27.41670 -26.59660 -25.16394 -24.44482 -24.04211 -22.31864 -22.09879 -20.40081 -19.52576 -19.15440 -18.80470 -17.94869 -17.33350 -16.87056 -16.69404 -16.19603 -15.94886 -15.66420 -15.54508 -15.15589 -14.95713 -14.66953 -14.50595 -14.29605 -14.10975 -13.84031 -13.62327 -13.30876 -13.23516 -13.02169 -12.98955 -12.70661 -12.65695 -12.45178 -12.28989 -12.01367 -11.97003 -11.64562 -11.59385 -11.42531 -11.22171 -11.14956 -10.72113 -10.70936 -10.36611 -9.89046 -9.65332 -8.86156 -7.76733 -5.17140 -0.69763 0.13478 0.56452 1.40449 1.46414 1.47206 1.55526 1.72796 2.07264 2.49728 3.15624 3.34329 3.41649 3.47690 3.64654 3.88944 3.93921 3.99041 4.07426 4.16556 4.23322 4.30576 4.38611 4.39872 4.44873 4.54466 4.56894 4.66054 4.74539 4.81111 4.87975 4.94107 4.95634 5.01692 5.09587 5.13946 5.25659 5.28570 5.46758 5.48215 5.54383 5.68102 5.83160 6.21063 6.29458 6.60633 6.91574 7.12973 7.80523 8.44602 9.27290 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.003470 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.168891 B = 8067.679331 C = 8140.246806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C 0.133 3.867 4 N -0.497 5.497 5 C 0.034 3.966 6 S 0.232 5.768 7 C -0.324 4.324 8 C 0.596 3.404 9 O -0.560 6.560 10 N -0.591 5.591 11 C 0.123 3.877 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.048 0.952 15 C -0.095 4.095 16 H 0.091 0.909 17 C -0.123 4.123 18 C 0.163 3.837 19 N -0.620 5.620 20 C -0.226 4.226 21 H 0.081 0.919 22 C -0.067 4.067 23 N -0.951 5.951 24 Si 0.972 3.028 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.271 1.271 28 C 0.118 3.882 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.246 0.754 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.089 0.911 40 H 0.046 0.954 41 H -0.007 1.007 42 H 0.054 0.946 43 H 0.244 0.756 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.795 0.935 -11.722 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.006 4.006 4 N -0.211 5.211 5 C -0.261 4.261 6 S 0.489 5.511 7 C -0.448 4.448 8 C 0.383 3.617 9 O -0.441 6.441 10 N -0.322 5.322 11 C 0.001 3.999 12 C -0.166 4.166 13 C 0.059 3.941 14 H 0.066 0.934 15 C -0.115 4.115 16 H 0.109 0.891 17 C -0.161 4.161 18 C 0.038 3.962 19 N -0.345 5.345 20 C -0.355 4.355 21 H 0.099 0.901 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.801 3.199 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.196 1.196 28 C -0.006 4.006 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.262 0.738 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.011 0.989 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.032 1.167 -11.510 21.424 hybrid contribution -1.625 -0.985 0.848 2.081 sum 16.407 0.182 -10.662 19.568 Atomic orbital electron populations 1.21623 0.93706 1.02876 1.01189 1.20353 0.96572 0.89041 1.04327 1.20679 0.96117 0.98291 0.85486 1.66150 1.16611 1.07537 1.30824 1.29526 0.98768 0.95441 1.02328 1.83824 1.57634 1.07792 1.01876 1.25369 1.19764 1.01523 0.98095 1.16994 0.77356 0.84278 0.83048 1.90758 1.52384 1.19966 1.80955 1.47478 1.59701 1.13320 1.11718 1.21629 0.95670 1.00741 0.81896 1.22176 0.94885 0.98487 1.01078 1.20870 0.84330 0.93398 0.95521 0.93393 1.21068 0.93956 1.01424 0.95011 0.89050 1.22858 0.95149 1.00668 0.97459 1.21563 0.95900 0.94055 0.84694 1.45181 1.01817 1.72087 1.15398 1.19376 0.89002 1.32676 0.94477 0.90134 1.25527 0.98004 1.02192 1.00254 1.70107 1.10023 1.50922 1.29018 0.85166 0.77983 0.77932 0.78818 1.21445 1.22453 1.19571 1.20772 0.96931 0.81528 1.01346 0.90452 0.94854 0.92015 0.88711 0.89974 0.73835 0.88756 0.89642 0.91814 0.94467 0.89206 0.93531 0.98887 0.92744 0.94645 0.89042 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.89 71.98 0.71 -2.62 16 2 C -0.06 -1.58 6.13 29.85 0.18 -1.39 16 3 C 0.13 3.34 6.04 42.09 0.25 3.60 16 4 N -0.50 -10.91 10.50 -190.40 -2.00 -12.91 16 5 C 0.03 0.48 12.22 130.60 1.60 2.08 16 6 S 0.23 3.56 20.03 -56.49 -1.13 2.43 16 7 C -0.32 -8.05 5.43 23.88 0.13 -7.92 16 8 C 0.60 17.63 7.28 86.45 0.63 18.26 16 9 O -0.56 -19.73 14.65 -4.31 -0.06 -19.79 16 10 N -0.59 -16.21 2.99 -836.91 -2.50 -18.71 16 11 C 0.12 3.49 6.43 86.31 0.56 4.04 16 12 C -0.13 -4.45 5.25 30.58 0.16 -4.29 16 13 C 0.16 6.15 3.36 44.51 0.15 6.30 16 14 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 15 C -0.10 -2.84 2.51 -11.59 -0.03 -2.87 16 16 H 0.09 2.50 8.12 -2.39 -0.02 2.48 16 17 C -0.12 -4.30 6.43 31.84 0.20 -4.09 16 18 C 0.16 7.78 5.73 86.97 0.50 8.28 16 19 N -0.62 -30.35 3.08 -667.54 -2.06 -32.41 16 20 C -0.23 -12.28 9.95 84.03 0.84 -11.45 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 22 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 23 N -0.95 -56.43 10.16 21.65 0.22 -56.21 16 24 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 C 0.12 2.76 4.79 85.59 0.41 3.17 16 29 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.33 6.22 -2.39 -0.01 2.32 16 34 H 0.25 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 2.56 7.00 -2.39 -0.02 2.55 16 37 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 41 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H 0.05 3.05 6.13 -2.38 -0.01 3.03 16 43 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.09 1.96 4.43 -11.36 -0.05 1.91 16 45 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -71.44 363.04 2.21 -69.23 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.95 Total: 12.96 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.76 Total: 7.79 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -6.33 Total: -120.23 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.79 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.13 Total: 2.43 kcal Total: -71.44 2.21 -69.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.097 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds