Wall clock time and date at job start Tue Mar 31 2020 18:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47315 * 2 1 4 4 N 1.29426 * 124.80831 * 89.97095 * 3 2 1 5 5 C 1.30937 * 117.36769 * 180.02562 * 4 3 2 6 6 C 1.35667 * 114.18789 * 0.02562 * 5 4 3 7 7 C 1.46686 * 126.12652 * 179.97438 * 6 5 4 8 8 O 1.21687 * 120.00236 * 29.02879 * 7 6 5 9 9 N 1.34782 * 119.99828 * 209.02280 * 7 6 5 10 10 C 1.46826 * 120.30175 * 177.66506 * 9 7 6 11 11 C 1.52969 * 107.39051 * 234.99716 * 10 9 7 12 12 C 1.53544 * 109.95574 * 298.41040 * 11 10 9 13 13 H 1.09002 * 110.97839 * 289.23856 * 12 11 10 14 14 C 1.51776 * 112.12347 * 53.07321 * 12 11 10 15 15 H 1.09006 * 104.99052 * 206.70037 * 14 12 11 16 16 C 1.53378 * 105.83443 * 95.18027 * 14 12 11 17 17 C 1.54475 * 102.54329 * 29.49017 * 16 14 12 18 18 N 1.46865 * 106.65255 * 332.26502 * 17 16 14 19 19 C 1.36938 * 125.33550 * 195.40660 * 18 17 16 20 20 H 1.07999 * 120.00028 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00071 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00127 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47246 * 90.00105 * 23 21 19 25 25 H 1.48498 * 109.47134 * 210.00078 * 23 21 19 26 26 H 1.48496 * 109.47069 * 329.99661 * 23 21 19 27 27 C 1.45649 * 120.30207 * 357.65026 * 9 7 6 28 28 S 1.70957 * 124.80280 * 270.33071 * 3 2 1 29 29 H 1.08998 * 109.47271 * 59.99880 * 1 2 3 30 30 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47177 * 299.99905 * 1 2 3 32 32 H 1.09001 * 109.46732 * 239.99469 * 2 1 3 33 33 H 1.08998 * 109.47271 * 120.00120 * 2 1 3 34 34 H 1.07998 * 122.90861 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.87216 * 354.46993 * 10 9 7 36 36 H 1.08998 * 109.86792 * 115.45642 * 10 9 7 37 37 H 1.09004 * 109.38120 * 58.68227 * 11 10 9 38 38 H 1.08994 * 109.38174 * 178.47148 * 11 10 9 39 39 H 1.08999 * 110.79577 * 271.22778 * 16 14 12 40 40 H 1.09004 * 110.80159 * 147.75433 * 16 14 12 41 41 H 1.09000 * 110.02482 * 212.96223 * 17 16 14 42 42 H 1.09004 * 110.02199 * 91.55693 * 17 16 14 43 43 H 0.97001 * 120.00518 * 179.97438 * 22 21 19 44 44 H 1.08997 * 108.44548 * 22.19943 * 27 9 7 45 45 H 1.09000 * 108.43901 * 264.89236 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1175 1.0627 5 6 2.7106 3.3417 0.8931 6 6 2.8405 3.7104 -0.4060 7 6 3.3009 5.0154 -0.8927 8 8 4.0758 5.6749 -0.2255 9 7 2.8655 5.4839 -2.0792 10 6 3.2816 6.8112 -2.5493 11 6 2.0113 7.6079 -2.8519 12 6 1.2097 6.9141 -3.9627 13 1 1.7153 7.0055 -4.9240 14 6 0.9401 5.4544 -3.6464 15 1 0.8312 4.9710 -4.6174 16 6 -0.4528 5.4154 -3.0055 17 6 -1.1592 6.6208 -3.6643 18 7 -0.1082 7.5860 -4.0121 19 6 -0.3155 8.9000 -4.3367 20 1 0.5235 9.5352 -4.5794 21 6 -1.6042 9.4157 -4.3539 22 7 -2.6267 8.6418 -4.0577 23 14 -1.8871 11.2080 -4.7975 24 1 -2.0855 11.3297 -6.2641 25 1 -3.0941 11.7081 -4.0916 26 1 -0.7068 12.0113 -4.3893 27 6 1.9784 4.6780 -2.9068 28 16 2.3500 2.3434 -1.4037 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.9436 4.0010 1.7162 35 1 3.8589 7.3147 -1.7739 36 1 3.8825 6.7124 -3.4533 37 1 1.4021 7.6735 -1.9504 38 1 2.2831 8.6115 -3.1788 39 1 -0.3858 5.5490 -1.9258 40 1 -0.9657 4.4852 -3.2502 41 1 -1.8618 7.0708 -2.9630 42 1 -1.6836 6.2998 -4.5644 43 1 -3.5272 9.0021 -4.0693 44 1 1.4759 3.9517 -2.2679 45 1 2.5834 4.1334 -3.6317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036903431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:25 Heat of formation + Delta-G solvation = 42.492466 kcal Electronic energy + Delta-G solvation = -27345.439764 eV Core-core repulsion = 23683.581513 eV Total energy + Delta-G solvation = -3661.858251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.54814 -39.72322 -38.22183 -35.41491 -34.32647 -32.77485 -32.18646 -30.17314 -29.41187 -28.26473 -26.40431 -25.12179 -23.74452 -23.42368 -22.71606 -21.24056 -20.32628 -19.36749 -18.66221 -17.96734 -16.98902 -16.80252 -16.18366 -15.68859 -15.18638 -14.89450 -14.81415 -14.62125 -14.36934 -14.08148 -13.85796 -13.59894 -13.18657 -13.01420 -12.67526 -12.49872 -12.31725 -12.21057 -12.04027 -11.72721 -11.54695 -11.50589 -11.40689 -11.03955 -10.88145 -10.75581 -10.26253 -10.21930 -10.11195 -9.93178 -9.80544 -9.64175 -9.55252 -9.37167 -9.05504 -8.66636 -8.51821 -6.88269 -5.71475 -3.09121 0.11491 0.95953 1.37731 2.35295 2.86396 3.14396 3.37883 3.43312 3.44997 3.80367 4.42178 4.46744 4.57776 4.69983 4.83167 4.85331 5.07028 5.10488 5.14366 5.26666 5.29711 5.43412 5.46035 5.51419 5.57904 5.59743 5.71300 5.82458 5.83081 5.88410 5.93336 5.94045 6.16378 6.24939 6.32051 6.46473 6.56648 6.62311 6.84311 7.03883 7.31660 7.46752 7.49257 7.60501 7.81074 8.04571 8.27200 9.18941 9.78889 10.42800 11.36038 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.003317 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.787460 B = 8440.485836 C = 9361.914005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C 0.038 3.962 4 N -0.479 5.479 5 C 0.116 3.884 6 C -0.290 4.290 7 C 0.595 3.405 8 O -0.531 6.531 9 N -0.592 5.592 10 C 0.113 3.887 11 C -0.139 4.139 12 C 0.173 3.827 13 H 0.043 0.957 14 C -0.106 4.106 15 H 0.069 0.931 16 C -0.136 4.136 17 C 0.167 3.833 18 N -0.599 5.599 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.119 3.881 28 S 0.190 5.810 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.185 0.815 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.080 0.920 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 -17.789 4.339 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.236 4.236 4 N -0.193 5.193 5 C -0.041 4.041 6 C -0.414 4.414 7 C 0.381 3.619 8 O -0.410 6.410 9 N -0.324 5.324 10 C -0.009 4.009 11 C -0.179 4.179 12 C 0.066 3.934 13 H 0.061 0.939 14 C -0.125 4.125 15 H 0.087 0.913 16 C -0.175 4.175 17 C 0.042 3.958 18 N -0.324 5.324 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.006 4.006 28 S 0.448 5.552 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.202 0.798 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.900 -17.768 4.047 20.280 hybrid contribution -0.132 1.506 0.378 1.558 sum 8.767 -16.262 4.424 18.997 Atomic orbital electron populations 1.21794 0.93086 1.02782 1.03089 1.20285 0.97031 0.87325 1.04398 1.27766 1.01204 1.01985 0.92630 1.66226 1.15504 1.05954 1.31567 1.22091 0.95305 0.91473 0.95274 1.25742 1.17034 1.00672 0.97969 1.16757 0.80799 0.83492 0.80870 1.90819 1.35176 1.58601 1.56378 1.47625 1.46922 1.19153 1.18720 1.21779 0.97902 0.81497 0.99758 1.22515 0.94992 0.99236 1.01170 1.20554 0.88867 0.88878 0.95140 0.93900 1.20669 0.95071 0.97411 0.99384 0.91288 1.22700 0.94423 1.00529 0.99837 1.21389 0.90680 0.86000 0.97710 1.44700 0.99569 1.07247 1.80875 1.19013 0.92565 0.84435 1.39159 0.90453 1.24782 0.95513 0.98196 1.01974 1.69916 0.98152 1.33980 1.54922 0.86115 0.77405 0.84347 0.77885 1.21661 1.21709 1.20676 1.20865 0.92002 0.93390 0.94350 1.84191 1.57780 1.02697 1.10496 0.92057 0.91205 0.91766 0.89477 0.88659 0.79805 0.89087 0.91280 0.91299 0.90912 0.92649 0.91988 0.89817 0.96295 0.93781 0.90313 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.61 16 2 C -0.05 -0.34 6.51 -27.88 -0.18 -0.52 16 3 C 0.04 0.39 6.64 -13.29 -0.09 0.31 16 4 N -0.48 -5.97 10.51 -11.50 -0.12 -6.09 16 5 C 0.12 1.52 11.20 -18.85 -0.21 1.30 16 6 C -0.29 -3.90 5.85 -37.09 -0.22 -4.12 16 7 C 0.59 9.35 7.60 -12.85 -0.10 9.25 16 8 O -0.53 -9.75 16.38 5.20 0.09 -9.66 16 9 N -0.59 -8.83 3.00 -177.87 -0.53 -9.36 16 10 C 0.11 1.70 6.43 -3.88 -0.02 1.67 16 11 C -0.14 -2.49 5.19 -26.46 -0.14 -2.63 16 12 C 0.17 3.31 3.43 -67.44 -0.23 3.08 16 13 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.11 -1.69 2.45 -92.88 -0.23 -1.92 16 15 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 16 C -0.14 -2.42 6.37 -25.76 -0.16 -2.59 16 17 C 0.17 3.90 5.54 -3.07 -0.02 3.88 16 18 N -0.60 -14.48 3.04 -163.70 -0.50 -14.98 16 19 C -0.22 -5.97 9.83 -15.06 -0.15 -6.12 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 22 N -0.92 -26.42 10.22 55.49 0.57 -25.85 16 23 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.12 1.58 4.80 -6.34 -0.03 1.55 16 28 S 0.19 1.94 19.12 -107.50 -2.06 -0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.19 2.24 8.06 -52.49 -0.42 1.81 16 35 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 2.23 6.41 -51.93 -0.33 1.90 16 42 H 0.02 0.48 8.12 -51.93 -0.42 0.06 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.08 0.99 3.83 -25.67 -0.10 0.89 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -31.64 365.64 -10.25 -41.89 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.67 Total: -0.30 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.50 Total: 2.20 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.59 Total: -56.28 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.06 Total: -0.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.64 -10.25 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036903431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.385 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds