Wall clock time and date at job start Tue Mar 31 2020 18:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47315 * 2 1 4 4 N 1.29426 * 124.80831 * 89.97095 * 3 2 1 5 5 C 1.30937 * 117.36769 * 180.02562 * 4 3 2 6 6 C 1.35667 * 114.18789 * 0.02562 * 5 4 3 7 7 C 1.46686 * 126.12652 * 179.97438 * 6 5 4 8 8 O 1.21687 * 120.00236 * 29.02879 * 7 6 5 9 9 N 1.34782 * 119.99828 * 209.02280 * 7 6 5 10 10 C 1.46826 * 120.30175 * 177.66506 * 9 7 6 11 11 C 1.52969 * 107.39051 * 234.99716 * 10 9 7 12 12 C 1.53544 * 109.95574 * 298.41040 * 11 10 9 13 13 H 1.09002 * 110.97839 * 289.23856 * 12 11 10 14 14 C 1.51776 * 112.12347 * 53.07321 * 12 11 10 15 15 H 1.09006 * 104.99052 * 206.70037 * 14 12 11 16 16 C 1.53378 * 105.83443 * 95.18027 * 14 12 11 17 17 C 1.54475 * 102.54329 * 29.49017 * 16 14 12 18 18 N 1.46865 * 106.65255 * 332.26502 * 17 16 14 19 19 C 1.36938 * 125.33550 * 195.40660 * 18 17 16 20 20 H 1.07999 * 120.00028 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00071 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00127 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47246 * 90.00105 * 23 21 19 25 25 H 1.48498 * 109.47134 * 210.00078 * 23 21 19 26 26 H 1.48496 * 109.47069 * 329.99661 * 23 21 19 27 27 C 1.45649 * 120.30207 * 357.65026 * 9 7 6 28 28 S 1.70957 * 124.80280 * 270.33071 * 3 2 1 29 29 H 1.08998 * 109.47271 * 59.99880 * 1 2 3 30 30 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47177 * 299.99905 * 1 2 3 32 32 H 1.09001 * 109.46732 * 239.99469 * 2 1 3 33 33 H 1.08998 * 109.47271 * 120.00120 * 2 1 3 34 34 H 1.07998 * 122.90861 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.87216 * 354.46993 * 10 9 7 36 36 H 1.08998 * 109.86792 * 115.45642 * 10 9 7 37 37 H 1.09004 * 109.38120 * 58.68227 * 11 10 9 38 38 H 1.08994 * 109.38174 * 178.47148 * 11 10 9 39 39 H 1.08999 * 110.79577 * 271.22778 * 16 14 12 40 40 H 1.09004 * 110.80159 * 147.75433 * 16 14 12 41 41 H 1.09000 * 110.02482 * 212.96223 * 17 16 14 42 42 H 1.09004 * 110.02199 * 91.55693 * 17 16 14 43 43 H 0.97001 * 120.00518 * 179.97438 * 22 21 19 44 44 H 1.08997 * 108.44548 * 22.19943 * 27 9 7 45 45 H 1.09000 * 108.43901 * 264.89236 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1175 1.0627 5 6 2.7106 3.3417 0.8931 6 6 2.8405 3.7104 -0.4060 7 6 3.3009 5.0154 -0.8927 8 8 4.0758 5.6749 -0.2255 9 7 2.8655 5.4839 -2.0792 10 6 3.2816 6.8112 -2.5493 11 6 2.0113 7.6079 -2.8519 12 6 1.2097 6.9141 -3.9627 13 1 1.7153 7.0055 -4.9240 14 6 0.9401 5.4544 -3.6464 15 1 0.8312 4.9710 -4.6174 16 6 -0.4528 5.4154 -3.0055 17 6 -1.1592 6.6208 -3.6643 18 7 -0.1082 7.5860 -4.0121 19 6 -0.3155 8.9000 -4.3367 20 1 0.5235 9.5352 -4.5794 21 6 -1.6042 9.4157 -4.3539 22 7 -2.6267 8.6418 -4.0577 23 14 -1.8871 11.2080 -4.7975 24 1 -2.0855 11.3297 -6.2641 25 1 -3.0941 11.7081 -4.0916 26 1 -0.7068 12.0113 -4.3893 27 6 1.9784 4.6780 -2.9068 28 16 2.3500 2.3434 -1.4037 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.9436 4.0010 1.7162 35 1 3.8589 7.3147 -1.7739 36 1 3.8825 6.7124 -3.4533 37 1 1.4021 7.6735 -1.9504 38 1 2.2831 8.6115 -3.1788 39 1 -0.3858 5.5490 -1.9258 40 1 -0.9657 4.4852 -3.2502 41 1 -1.8618 7.0708 -2.9630 42 1 -1.6836 6.2998 -4.5644 43 1 -3.5272 9.0021 -4.0693 44 1 1.4759 3.9517 -2.2679 45 1 2.5834 4.1334 -3.6317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036903431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:24 Heat of formation + Delta-G solvation = 23.157420 kcal Electronic energy + Delta-G solvation = -27346.278195 eV Core-core repulsion = 23683.581513 eV Total energy + Delta-G solvation = -3662.696682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72536 -40.75457 -39.60603 -36.88056 -34.98423 -34.52252 -33.59849 -31.61686 -30.67868 -29.78304 -27.39325 -26.62120 -25.27739 -24.52366 -23.61539 -22.39088 -22.10566 -20.53590 -19.60391 -19.22221 -18.83144 -17.85794 -17.35883 -16.90850 -16.77843 -16.19204 -16.02822 -15.67060 -15.61248 -15.23822 -14.93814 -14.66148 -14.43360 -14.32799 -14.11743 -13.89910 -13.61886 -13.23153 -13.21471 -13.05002 -12.78983 -12.68160 -12.62093 -12.54928 -12.41041 -12.02710 -12.02480 -11.72237 -11.66457 -11.52509 -11.24425 -11.05424 -10.70157 -10.69321 -10.34283 -10.00436 -9.64846 -8.85938 -7.79295 -5.17637 -0.79075 0.09261 0.50056 1.35534 1.45786 1.46786 1.55042 1.73922 2.05410 2.49249 3.03579 3.32700 3.39790 3.46258 3.65057 3.84042 3.90294 3.93515 4.13619 4.18307 4.24329 4.30533 4.33432 4.38120 4.43504 4.53260 4.63900 4.69491 4.72006 4.78655 4.88635 4.99631 5.02601 5.04524 5.10878 5.12330 5.26126 5.37558 5.44502 5.47636 5.54470 5.69017 5.82766 6.16233 6.27368 6.58357 6.87091 7.13511 7.81390 8.43261 9.26556 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.003317 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.787460 B = 8440.485836 C = 9361.914005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.043 3.957 4 N -0.503 5.503 5 C 0.113 3.887 6 C -0.325 4.325 7 C 0.594 3.406 8 O -0.568 6.568 9 N -0.594 5.594 10 C 0.122 3.878 11 C -0.126 4.126 12 C 0.166 3.834 13 H 0.052 0.948 14 C -0.096 4.096 15 H 0.090 0.910 16 C -0.122 4.122 17 C 0.171 3.829 18 N -0.620 5.620 19 C -0.228 4.228 20 H 0.082 0.918 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.972 3.028 24 H -0.286 1.286 25 H -0.298 1.298 26 H -0.271 1.271 27 C 0.119 3.881 28 S 0.247 5.753 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.095 0.905 41 H 0.041 0.959 42 H -0.007 1.007 43 H 0.244 0.756 44 H 0.090 0.910 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.188 -20.416 3.248 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.230 4.230 4 N -0.218 5.218 5 C -0.045 4.045 6 C -0.448 4.448 7 C 0.382 3.618 8 O -0.449 6.449 9 N -0.325 5.325 10 C 0.000 4.000 11 C -0.167 4.167 12 C 0.060 3.940 13 H 0.070 0.930 14 C -0.116 4.116 15 H 0.108 0.892 16 C -0.160 4.160 17 C 0.045 3.955 18 N -0.344 5.344 19 C -0.357 4.357 20 H 0.100 0.900 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.802 3.198 24 H -0.213 1.213 25 H -0.225 1.225 26 H -0.196 1.196 27 C -0.005 4.005 28 S 0.506 5.494 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.198 0.802 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.011 0.989 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.244 -20.420 2.931 23.033 hybrid contribution -0.558 2.254 0.732 2.435 sum 9.686 -18.166 3.663 20.910 Atomic orbital electron populations 1.21806 0.92681 1.03972 1.02216 1.20536 0.97193 0.85350 1.06161 1.28446 0.99217 1.03061 0.92326 1.66292 1.16883 1.05901 1.32710 1.22162 0.95024 0.91899 0.95424 1.25600 1.19061 1.01163 0.99024 1.17024 0.80251 0.84074 0.80487 1.90790 1.36917 1.59943 1.57262 1.47681 1.46996 1.19039 1.18822 1.21661 0.96274 0.81365 1.00737 1.22295 0.95802 0.99436 0.99144 1.20830 0.86690 0.90698 0.95767 0.92974 1.20617 0.94635 0.95650 1.00690 0.89176 1.22548 0.95373 0.99211 0.98858 1.21139 0.90628 0.87800 0.95891 1.44991 1.01890 1.06939 1.80623 1.19369 0.92634 0.85988 1.37701 0.90028 1.25558 0.95597 1.01881 1.03026 1.70158 0.98022 1.35300 1.56562 0.85156 0.77053 0.80236 0.77396 1.21334 1.22505 1.19578 1.20990 0.91726 0.92864 0.94910 1.83786 1.56434 1.00244 1.08907 0.92045 0.89058 0.93521 0.86603 0.88032 0.80240 0.89802 0.88419 0.94673 0.91785 0.93432 0.88698 0.94099 0.98887 0.94662 0.89296 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.05 -0.53 6.51 29.85 0.19 -0.34 16 3 C 0.04 0.76 6.64 88.46 0.59 1.35 16 4 N -0.50 -11.86 10.51 -190.30 -2.00 -13.86 16 5 C 0.11 2.90 11.20 84.23 0.94 3.85 16 6 C -0.32 -8.25 5.85 23.88 0.14 -8.11 16 7 C 0.59 18.06 7.60 86.45 0.66 18.72 16 8 O -0.57 -20.92 16.38 -4.31 -0.07 -20.99 16 9 N -0.59 -16.51 3.00 -834.88 -2.50 -19.01 16 10 C 0.12 3.49 6.43 86.31 0.55 4.04 16 11 C -0.13 -4.51 5.19 30.77 0.16 -4.35 16 12 C 0.17 6.16 3.43 44.48 0.15 6.31 16 13 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 14 C -0.10 -2.82 2.45 -12.26 -0.03 -2.85 16 15 H 0.09 2.34 8.04 -2.38 -0.02 2.32 16 16 C -0.12 -4.15 6.37 31.22 0.20 -3.95 16 17 C 0.17 8.15 5.54 86.81 0.48 8.63 16 18 N -0.62 -30.34 3.04 -671.84 -2.04 -32.38 16 19 C -0.23 -12.38 9.83 84.03 0.83 -11.55 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.07 -3.84 5.48 84.86 0.47 -3.37 16 22 N -0.95 -56.64 10.22 21.65 0.22 -56.41 16 23 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C 0.12 2.74 4.80 85.35 0.41 3.15 16 28 S 0.25 4.18 19.12 -56.49 -1.08 3.10 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.18 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.08 2.56 6.99 -2.39 -0.02 2.55 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 2.35 8.11 -2.39 -0.02 2.33 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.04 2.29 6.41 -2.39 -0.02 2.28 16 42 H -0.01 -0.36 8.12 -2.38 -0.02 -0.38 16 43 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.09 1.90 3.83 -19.09 -0.07 1.83 16 45 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.51 365.64 1.93 -70.58 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.93 Total: 10.46 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 6.45 Total: 10.76 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -6.33 Total: -121.66 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.07 Total: -20.99 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.08 Total: 3.10 kcal Total: -72.51 1.93 -70.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036903431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.738 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds