Wall clock time and date at job start Tue Mar 31 2020 18:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46754 * 2 1 4 4 N 1.30949 * 122.90416 * 270.00039 * 3 2 1 5 5 C 1.29432 * 117.35978 * 179.97438 * 4 3 2 6 6 S 1.70950 * 110.39324 * 359.72485 * 5 4 3 7 7 C 1.35666 * 122.90542 * 89.99927 * 3 2 1 8 8 C 1.46679 * 126.12816 * 0.02562 * 7 3 2 9 9 O 1.21688 * 120.00192 * 333.59323 * 8 7 3 10 10 N 1.34779 * 120.00053 * 153.59560 * 8 7 3 11 11 C 1.46940 * 120.44264 * 173.56368 * 10 8 7 12 12 C 1.53594 * 108.52804 * 125.72672 * 11 10 8 13 13 H 1.09005 * 110.59774 * 172.77303 * 12 11 10 14 14 C 1.53365 * 108.68929 * 294.36292 * 12 11 10 15 15 C 1.53006 * 109.26983 * 60.29326 * 14 12 11 16 16 C 1.53012 * 109.79524 * 60.57487 * 15 14 12 17 17 C 1.53372 * 109.25187 * 299.41475 * 16 15 14 18 18 H 1.08999 * 110.59501 * 178.14440 * 17 16 15 19 19 C 1.46942 * 120.44024 * 353.54405 * 10 8 7 20 20 N 1.47569 * 107.76816 * 51.14863 * 12 11 10 21 21 C 1.36935 * 121.61206 * 120.47993 * 20 12 11 22 22 H 1.07993 * 120.00021 * 341.27873 * 21 20 12 23 23 C 1.38812 * 119.99927 * 161.27135 * 21 20 12 24 24 N 1.31616 * 120.00179 * 322.92028 * 23 21 20 25 25 Si 1.86803 * 119.99971 * 142.91790 * 23 21 20 26 26 H 1.48496 * 109.47130 * 85.30262 * 25 23 21 27 27 H 1.48508 * 109.47013 * 205.30272 * 25 23 21 28 28 H 1.48504 * 109.47006 * 325.30070 * 25 23 21 29 29 H 1.08999 * 109.47319 * 60.00518 * 1 2 3 30 30 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47621 * 299.99776 * 1 2 3 32 32 H 1.08997 * 109.47166 * 240.00462 * 2 1 3 33 33 H 1.08990 * 109.47068 * 119.99620 * 2 1 3 34 34 H 1.08001 * 124.79785 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.63375 * 6.01653 * 11 10 8 36 36 H 1.09007 * 109.78817 * 245.53214 * 11 10 8 37 37 H 1.08993 * 109.51028 * 180.23714 * 14 12 11 38 38 H 1.09006 * 109.50466 * 300.35955 * 14 12 11 39 39 H 1.09001 * 109.42358 * 300.47012 * 15 14 12 40 40 H 1.09004 * 109.36356 * 180.63777 * 15 14 12 41 41 H 1.09002 * 109.50926 * 179.48205 * 16 15 14 42 42 H 1.08994 * 109.54706 * 59.37387 * 16 15 14 43 43 H 1.09001 * 109.62577 * 353.97414 * 19 10 8 44 44 H 1.09000 * 109.62791 * 114.54397 * 19 10 8 45 45 H 0.97005 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2694 2.0915 -1.0994 5 6 2.6982 3.3063 -0.9744 6 16 2.8364 3.7221 0.6780 7 6 2.2779 2.1157 1.1390 8 6 2.1035 1.6207 2.5087 9 8 1.2957 0.7403 2.7392 10 7 2.8379 2.1410 3.5119 11 6 2.5743 1.7552 4.9051 12 6 3.8838 1.2475 5.5270 13 1 3.7581 1.0719 6.5954 14 6 4.2983 -0.0449 4.8129 15 6 4.5117 0.2459 3.3259 16 6 5.6214 1.2855 3.1553 17 6 5.2118 2.5832 3.8627 18 1 6.0022 3.3295 3.7826 19 6 3.9130 3.1012 3.2271 20 7 4.9253 2.2619 5.2742 21 6 5.5937 2.8754 6.2999 22 1 5.1808 2.8624 7.2976 23 6 6.8022 3.5138 6.0571 24 7 7.6552 3.0024 5.1951 25 14 7.2178 5.0989 6.9539 26 1 7.8222 4.7782 8.2718 27 1 8.1827 5.8867 6.1453 28 1 5.9788 5.8920 7.1573 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8899 34 1 2.9308 3.9657 -1.7975 35 1 1.8258 0.9632 4.9305 36 1 2.2135 2.6181 5.4650 37 1 5.2251 -0.4195 5.2471 38 1 3.5133 -0.7924 4.9284 39 1 3.5867 0.6293 2.8952 40 1 4.7954 -0.6741 2.8148 41 1 5.7759 1.4823 2.0944 42 1 6.5452 0.9080 3.5936 43 1 4.0448 3.1941 2.1490 44 1 3.6591 4.0721 3.6526 45 1 8.4998 3.4483 5.0257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039621523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:16 Heat of formation + Delta-G solvation = 68.470925 kcal Electronic energy + Delta-G solvation = -29003.962903 eV Core-core repulsion = 25343.231162 eV Total energy + Delta-G solvation = -3660.731741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94349 -39.75686 -37.65758 -34.13455 -33.42893 -32.96301 -32.08796 -30.49196 -29.82649 -27.10144 -26.06254 -25.55629 -23.74372 -23.24976 -21.93995 -21.55860 -20.69000 -18.82552 -18.54281 -18.16837 -17.04830 -16.05270 -15.96472 -15.31937 -15.00796 -14.62400 -14.43912 -14.12549 -14.04028 -13.76575 -13.64481 -13.21796 -13.18887 -12.96007 -12.63314 -12.39128 -12.19075 -12.06545 -11.80818 -11.60227 -11.39349 -11.21944 -11.06002 -10.83261 -10.69956 -10.43315 -10.25044 -10.18639 -10.11513 -9.91685 -9.67613 -9.59115 -9.42031 -9.20049 -8.75826 -8.52952 -7.98002 -6.88429 -5.99827 -3.17882 0.29340 1.18900 1.58128 2.51308 3.13860 3.31156 3.35150 3.42050 3.46255 4.09937 4.41250 4.68393 4.95773 5.00580 5.03974 5.15047 5.42914 5.48012 5.54179 5.56755 5.62730 5.64912 5.75208 5.82652 5.87472 5.98415 6.01050 6.03172 6.12798 6.24734 6.26095 6.31793 6.35867 6.38297 6.54577 6.60214 6.76975 6.92498 6.95270 6.99683 7.22123 7.37044 7.57003 7.68527 7.75245 8.16293 8.31014 8.98782 9.68339 10.27680 11.07861 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.004602 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.698301 B = 6083.180349 C = 6840.159958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.138 3.862 4 N -0.475 5.475 5 C 0.004 3.996 6 S 0.194 5.806 7 C -0.286 4.286 8 C 0.594 3.406 9 O -0.532 6.532 10 N -0.584 5.584 11 C 0.104 3.896 12 C 0.153 3.847 13 H 0.081 0.919 14 C -0.122 4.122 15 C -0.138 4.138 16 C -0.118 4.118 17 C 0.181 3.819 18 H 0.110 0.890 19 C 0.077 3.923 20 N -0.576 5.576 21 C -0.264 4.264 22 H 0.073 0.927 23 C 0.013 3.987 24 N -0.873 5.873 25 Si 0.876 3.124 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.200 0.800 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.615 0.020 -10.047 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C 0.000 4.000 4 N -0.188 5.188 5 C -0.291 4.291 6 S 0.451 5.549 7 C -0.410 4.410 8 C 0.382 3.618 9 O -0.412 6.412 10 N -0.316 5.316 11 C -0.020 4.020 12 C 0.045 3.955 13 H 0.099 0.901 14 C -0.162 4.162 15 C -0.176 4.176 16 C -0.157 4.157 17 C 0.073 3.927 18 H 0.128 0.872 19 C -0.048 4.048 20 N -0.296 5.296 21 C -0.392 4.392 22 H 0.091 0.909 23 C -0.188 4.188 24 N -0.515 5.515 25 Si 0.705 3.295 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.206 1.206 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.217 0.783 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.591 0.410 -9.974 13.843 hybrid contribution 0.403 0.196 0.206 0.493 sum -9.189 0.606 -9.768 13.424 Atomic orbital electron populations 1.21620 0.93779 1.01946 1.02108 1.20209 0.96831 0.88386 1.03532 1.20609 0.96038 0.98242 0.85125 1.66132 1.14926 1.06412 1.31377 1.28910 1.01305 0.96490 1.02369 1.84375 1.57299 1.12324 1.00942 1.25582 1.16956 0.99087 0.99418 1.16492 0.80797 0.82039 0.82458 1.90788 1.37039 1.30399 1.82984 1.47995 1.33008 1.43785 1.06818 1.22301 0.99569 1.00346 0.79745 1.21205 0.88168 0.88702 0.97406 0.90085 1.21932 1.00393 0.97638 0.96199 1.22079 1.00738 0.97988 0.96774 1.21869 0.99068 0.97048 0.97764 1.21007 0.92296 0.96017 0.83395 0.87245 1.23048 0.90135 0.92247 0.99383 1.44540 1.41203 1.42598 1.01290 1.19032 1.01180 1.28425 0.90555 0.90916 1.24652 0.94410 1.00751 0.98980 1.70320 1.06684 1.36108 1.38380 0.86713 0.77695 0.85786 0.79337 1.21394 1.21568 1.20581 0.93183 0.92151 0.91575 0.90519 0.89181 0.78306 0.89606 0.91514 0.92276 0.93671 0.90416 0.94893 0.94634 0.90736 0.90967 0.91009 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.78 37.16 0.36 -1.33 16 2 C -0.05 -0.68 5.64 -27.88 -0.16 -0.83 16 3 C 0.14 2.03 6.04 -83.89 -0.51 1.52 16 4 N -0.47 -6.54 10.50 -11.53 -0.12 -6.66 16 5 C 0.00 0.04 12.22 51.75 0.63 0.67 16 6 S 0.19 2.34 19.28 -107.50 -2.07 0.27 16 7 C -0.29 -4.37 5.86 -37.10 -0.22 -4.59 16 8 C 0.59 10.15 4.74 -12.85 -0.06 10.09 16 9 O -0.53 -9.83 13.51 5.20 0.07 -9.76 16 10 N -0.58 -10.10 1.65 -173.79 -0.29 -10.38 16 11 C 0.10 1.81 5.90 -3.49 -0.02 1.79 16 12 C 0.15 2.97 3.61 -66.85 -0.24 2.73 16 13 H 0.08 1.53 8.03 -51.93 -0.42 1.12 16 14 C -0.12 -2.33 5.58 -26.54 -0.15 -2.48 16 15 C -0.14 -2.62 5.55 -26.72 -0.15 -2.77 16 16 C -0.12 -2.41 5.59 -26.53 -0.15 -2.56 16 17 C 0.18 3.78 2.86 -66.84 -0.19 3.59 16 18 H 0.11 2.58 5.93 -51.93 -0.31 2.27 16 19 C 0.08 1.35 5.02 -3.49 -0.02 1.33 16 20 N -0.58 -12.87 2.56 -155.43 -0.40 -13.27 16 21 C -0.26 -6.62 9.63 -15.06 -0.15 -6.77 16 22 H 0.07 1.82 8.04 -52.49 -0.42 1.40 16 23 C 0.01 0.32 4.55 -17.43 -0.08 0.24 16 24 N -0.87 -23.19 11.87 55.49 0.66 -22.53 16 25 Si 0.88 20.01 29.68 -169.99 -5.05 14.96 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.93 7.26 -51.93 -0.38 0.55 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.35 6.79 -51.93 -0.35 0.99 16 34 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.09 1.45 6.98 -51.93 -0.36 1.09 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.45 2.47 -52.44 -0.13 1.32 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.07 1.14 3.71 -23.60 -0.09 1.06 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -28.34 349.95 -9.25 -37.59 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.24 Total: 3.86 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.09 Total: 0.64 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.15 Total: -52.84 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.05 Total: 14.96 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.07 Total: 0.27 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.34 -9.25 -37.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039621523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.061 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds