Wall clock time and date at job start Tue Mar 31 2020 18:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46754 * 2 1 4 4 N 1.30949 * 122.90416 * 270.00039 * 3 2 1 5 5 C 1.29432 * 117.35978 * 179.97438 * 4 3 2 6 6 S 1.70950 * 110.39324 * 359.72485 * 5 4 3 7 7 C 1.35666 * 122.90542 * 89.99927 * 3 2 1 8 8 C 1.46679 * 126.12816 * 0.02562 * 7 3 2 9 9 O 1.21688 * 120.00192 * 333.59323 * 8 7 3 10 10 N 1.34779 * 120.00053 * 153.59560 * 8 7 3 11 11 C 1.46940 * 120.44264 * 173.56368 * 10 8 7 12 12 C 1.53594 * 108.52804 * 125.72672 * 11 10 8 13 13 H 1.09005 * 110.59774 * 172.77303 * 12 11 10 14 14 C 1.53365 * 108.68929 * 294.36292 * 12 11 10 15 15 C 1.53006 * 109.26983 * 60.29326 * 14 12 11 16 16 C 1.53012 * 109.79524 * 60.57487 * 15 14 12 17 17 C 1.53372 * 109.25187 * 299.41475 * 16 15 14 18 18 H 1.08999 * 110.59501 * 178.14440 * 17 16 15 19 19 C 1.46942 * 120.44024 * 353.54405 * 10 8 7 20 20 N 1.47569 * 107.76816 * 51.14863 * 12 11 10 21 21 C 1.36935 * 121.61206 * 120.47993 * 20 12 11 22 22 H 1.07993 * 120.00021 * 341.27873 * 21 20 12 23 23 C 1.38812 * 119.99927 * 161.27135 * 21 20 12 24 24 N 1.31616 * 120.00179 * 322.92028 * 23 21 20 25 25 Si 1.86803 * 119.99971 * 142.91790 * 23 21 20 26 26 H 1.48496 * 109.47130 * 85.30262 * 25 23 21 27 27 H 1.48508 * 109.47013 * 205.30272 * 25 23 21 28 28 H 1.48504 * 109.47006 * 325.30070 * 25 23 21 29 29 H 1.08999 * 109.47319 * 60.00518 * 1 2 3 30 30 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47621 * 299.99776 * 1 2 3 32 32 H 1.08997 * 109.47166 * 240.00462 * 2 1 3 33 33 H 1.08990 * 109.47068 * 119.99620 * 2 1 3 34 34 H 1.08001 * 124.79785 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.63375 * 6.01653 * 11 10 8 36 36 H 1.09007 * 109.78817 * 245.53214 * 11 10 8 37 37 H 1.08993 * 109.51028 * 180.23714 * 14 12 11 38 38 H 1.09006 * 109.50466 * 300.35955 * 14 12 11 39 39 H 1.09001 * 109.42358 * 300.47012 * 15 14 12 40 40 H 1.09004 * 109.36356 * 180.63777 * 15 14 12 41 41 H 1.09002 * 109.50926 * 179.48205 * 16 15 14 42 42 H 1.08994 * 109.54706 * 59.37387 * 16 15 14 43 43 H 1.09001 * 109.62577 * 353.97414 * 19 10 8 44 44 H 1.09000 * 109.62791 * 114.54397 * 19 10 8 45 45 H 0.97005 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2694 2.0915 -1.0994 5 6 2.6982 3.3063 -0.9744 6 16 2.8364 3.7221 0.6780 7 6 2.2779 2.1157 1.1390 8 6 2.1035 1.6207 2.5087 9 8 1.2957 0.7403 2.7392 10 7 2.8379 2.1410 3.5119 11 6 2.5743 1.7552 4.9051 12 6 3.8838 1.2475 5.5270 13 1 3.7581 1.0719 6.5954 14 6 4.2983 -0.0449 4.8129 15 6 4.5117 0.2459 3.3259 16 6 5.6214 1.2855 3.1553 17 6 5.2118 2.5832 3.8627 18 1 6.0022 3.3295 3.7826 19 6 3.9130 3.1012 3.2271 20 7 4.9253 2.2619 5.2742 21 6 5.5937 2.8754 6.2999 22 1 5.1808 2.8624 7.2976 23 6 6.8022 3.5138 6.0571 24 7 7.6552 3.0024 5.1951 25 14 7.2178 5.0989 6.9539 26 1 7.8222 4.7782 8.2718 27 1 8.1827 5.8867 6.1453 28 1 5.9788 5.8920 7.1573 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8899 34 1 2.9308 3.9657 -1.7975 35 1 1.8258 0.9632 4.9305 36 1 2.2135 2.6181 5.4650 37 1 5.2251 -0.4195 5.2471 38 1 3.5133 -0.7924 4.9284 39 1 3.5867 0.6293 2.8952 40 1 4.7954 -0.6741 2.8148 41 1 5.7759 1.4823 2.0944 42 1 6.5452 0.9080 3.5936 43 1 4.0448 3.1941 2.1490 44 1 3.6591 4.0721 3.6526 45 1 8.4998 3.4483 5.0257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039621523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:15 Heat of formation + Delta-G solvation = 53.452695 kcal Electronic energy + Delta-G solvation = -29004.614143 eV Core-core repulsion = 25343.231162 eV Total energy + Delta-G solvation = -3661.382980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31014 -40.89843 -39.09023 -35.68482 -34.66164 -34.46828 -33.63420 -32.25111 -30.99491 -28.58774 -27.42057 -26.84161 -25.42223 -24.25530 -23.43948 -23.12876 -22.06966 -20.26245 -19.85935 -19.41847 -18.46551 -17.41570 -17.33207 -16.67992 -16.52538 -16.11219 -15.68542 -15.64449 -15.31974 -15.15412 -14.82028 -14.70315 -14.54773 -14.42562 -14.20247 -13.71760 -13.58637 -13.36589 -13.29928 -13.13127 -12.90217 -12.62484 -12.46609 -12.23669 -12.21042 -11.92694 -11.88260 -11.79643 -11.69107 -11.35004 -11.14351 -11.02899 -10.69781 -10.38862 -10.34197 -9.80269 -9.51966 -8.64781 -7.91409 -5.11062 -0.73141 0.18057 0.59156 1.42365 1.48449 1.55418 1.62991 1.85104 2.07482 2.56191 3.15769 3.17052 3.40588 3.49933 3.95295 4.04151 4.09918 4.10901 4.14612 4.18519 4.24243 4.38718 4.43023 4.46646 4.57025 4.60884 4.64562 4.75089 4.78732 4.84690 4.95332 4.99799 5.02842 5.04889 5.18364 5.22831 5.30796 5.33559 5.36448 5.45397 5.58255 5.70687 5.76263 6.29371 6.30955 6.60339 6.98341 7.10476 7.83320 8.41452 9.13942 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.004602 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.698301 B = 6083.180349 C = 6840.159958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.052 4.052 3 C 0.140 3.860 4 N -0.496 5.496 5 C 0.029 3.971 6 S 0.216 5.784 7 C -0.326 4.326 8 C 0.597 3.403 9 O -0.549 6.549 10 N -0.588 5.588 11 C 0.113 3.887 12 C 0.148 3.852 13 H 0.082 0.918 14 C -0.117 4.117 15 C -0.134 4.134 16 C -0.109 4.109 17 C 0.178 3.822 18 H 0.082 0.918 19 C 0.090 3.910 20 N -0.588 5.588 21 C -0.269 4.269 22 H 0.069 0.931 23 C -0.029 4.029 24 N -0.902 5.902 25 Si 0.935 3.065 26 H -0.292 1.292 27 H -0.294 1.294 28 H -0.275 1.275 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.036 0.964 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 0.972 -11.739 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C 0.002 3.998 4 N -0.210 5.210 5 C -0.265 4.265 6 S 0.473 5.527 7 C -0.450 4.450 8 C 0.386 3.614 9 O -0.430 6.430 10 N -0.320 5.320 11 C -0.011 4.011 12 C 0.041 3.959 13 H 0.100 0.900 14 C -0.157 4.157 15 C -0.172 4.172 16 C -0.148 4.148 17 C 0.071 3.929 18 H 0.100 0.900 19 C -0.035 4.035 20 N -0.310 5.310 21 C -0.398 4.398 22 H 0.087 0.913 23 C -0.227 4.227 24 N -0.546 5.546 25 Si 0.764 3.236 26 H -0.219 1.219 27 H -0.220 1.220 28 H -0.201 1.201 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.260 0.740 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.003 1.368 -11.661 16.091 hybrid contribution 0.819 -0.127 0.651 1.053 sum -10.185 1.241 -11.011 15.050 Atomic orbital electron populations 1.21544 0.92901 1.02790 1.01396 1.20240 0.97553 0.88185 1.03244 1.20805 0.95081 0.98616 0.85338 1.66206 1.16517 1.07465 1.30848 1.29652 0.98112 0.95843 1.02875 1.84222 1.56782 1.10119 1.01572 1.25451 1.19782 1.01269 0.98494 1.16686 0.80182 0.81467 0.83035 1.90773 1.37624 1.31130 1.83503 1.47981 1.33178 1.43967 1.06886 1.22144 0.98178 1.00809 0.79968 1.21354 0.88422 0.88256 0.97888 0.89984 1.21865 0.99775 0.97964 0.96055 1.22072 1.00599 0.97734 0.96811 1.21726 0.97767 0.97259 0.98059 1.20936 0.93372 0.95477 0.83152 0.90035 1.22823 0.88247 0.92065 1.00390 1.44708 1.41379 1.43488 1.01415 1.19268 1.01059 1.28279 0.91169 0.91328 1.25187 0.94532 1.02686 1.00271 1.70411 1.06947 1.36954 1.40298 0.85808 0.77240 0.82744 0.77838 1.21932 1.21978 1.20085 0.92488 0.90605 0.93504 0.89312 0.90858 0.74023 0.88808 0.90853 0.94688 0.91803 0.89353 0.94533 0.93375 0.94530 0.89063 0.90659 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.78 71.98 0.70 -2.27 16 2 C -0.05 -1.35 5.64 29.85 0.17 -1.18 16 3 C 0.14 3.85 6.04 42.09 0.25 4.10 16 4 N -0.50 -12.16 10.50 -190.39 -2.00 -14.16 16 5 C 0.03 0.53 12.22 130.60 1.60 2.13 16 6 S 0.22 4.60 19.28 -56.49 -1.09 3.51 16 7 C -0.33 -9.34 5.86 23.88 0.14 -9.20 16 8 C 0.60 19.60 4.74 86.45 0.41 20.01 16 9 O -0.55 -19.73 13.51 -4.31 -0.06 -19.78 16 10 N -0.59 -19.63 1.65 -821.97 -1.35 -20.98 16 11 C 0.11 3.79 5.90 86.50 0.51 4.30 16 12 C 0.15 5.71 3.61 45.11 0.16 5.88 16 13 H 0.08 3.11 8.03 -2.38 -0.02 3.09 16 14 C -0.12 -4.47 5.58 30.72 0.17 -4.30 16 15 C -0.13 -5.07 5.55 30.60 0.17 -4.90 16 16 C -0.11 -4.49 5.59 30.72 0.17 -4.32 16 17 C 0.18 7.50 2.86 45.11 0.13 7.63 16 18 H 0.08 3.93 5.93 -2.39 -0.01 3.91 16 19 C 0.09 3.05 5.02 86.49 0.43 3.48 16 20 N -0.59 -26.56 2.56 -645.66 -1.66 -28.22 16 21 C -0.27 -13.64 9.63 84.03 0.81 -12.83 16 22 H 0.07 3.47 8.04 -2.91 -0.02 3.44 16 23 C -0.03 -1.49 4.55 84.86 0.39 -1.10 16 24 N -0.90 -49.20 11.87 21.65 0.26 -48.94 16 25 Si 0.94 41.73 29.68 68.60 2.04 43.77 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 27 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 28 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.26 7.26 -2.39 -0.02 1.25 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.13 6.79 -2.39 -0.02 2.11 16 34 H 0.24 2.12 8.06 -2.91 -0.02 2.09 16 35 H 0.09 3.03 6.98 -2.39 -0.02 3.02 16 36 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.09 3.22 2.47 -3.40 -0.01 3.21 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.09 2.73 3.71 -20.40 -0.08 2.66 16 44 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.25 13.33 8.31 -92.70 -0.77 12.56 16 Total: -1.00 -61.55 349.95 3.29 -58.26 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.94 Total: 19.13 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 6.22 Total: 7.41 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -4.75 Total: -112.30 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.78 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.04 Total: 43.77 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.09 Total: 3.51 kcal Total: -61.55 3.29 -58.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039621523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.713 kcal (2) G-P(sol) polarization free energy of solvation -61.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds