Wall clock time and date at job start Tue Mar 31 2020 18:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47109 * 2 1 4 4 N 1.29432 * 124.80428 * 89.95576 * 3 2 1 5 5 C 1.30944 * 117.36185 * 179.76487 * 4 3 2 6 6 C 1.35656 * 114.19195 * 0.48739 * 5 4 3 7 7 C 1.46686 * 126.12998 * 179.82140 * 6 5 4 8 8 O 1.21687 * 119.99660 * 316.04162 * 7 6 5 9 9 N 1.34776 * 119.99971 * 136.04619 * 7 6 5 10 10 C 1.46941 * 120.43842 * 184.16992 * 9 7 6 11 11 C 1.53595 * 108.54679 * 125.74419 * 10 9 7 12 12 H 1.08998 * 110.59628 * 172.12946 * 11 10 9 13 13 C 1.53368 * 108.68430 * 294.32325 * 11 10 9 14 14 C 1.53010 * 109.25495 * 60.26979 * 13 11 10 15 15 C 1.53008 * 109.79734 * 60.57391 * 14 13 11 16 16 C 1.53367 * 109.27319 * 299.43367 * 15 14 13 17 17 H 1.08997 * 111.08372 * 177.80708 * 16 15 14 18 18 C 1.46945 * 120.44017 * 4.14412 * 9 7 6 19 19 N 1.47564 * 107.98144 * 56.34894 * 16 15 14 20 20 C 1.36946 * 121.61022 * 122.25606 * 19 16 15 21 21 H 1.08003 * 119.99680 * 27.16138 * 20 19 16 22 22 C 1.38805 * 120.00059 * 207.16691 * 20 19 16 23 23 N 1.31623 * 120.00102 * 18.46871 * 22 20 19 24 24 Si 1.86796 * 119.99973 * 198.47045 * 22 20 19 25 25 H 1.48500 * 109.47365 * 59.99841 * 24 22 20 26 26 H 1.48505 * 109.47276 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47033 * 299.99606 * 24 22 20 28 28 S 1.70954 * 124.80488 * 270.00205 * 3 2 1 29 29 H 1.09010 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47453 * 299.99851 * 1 2 3 31 31 H 1.08996 * 109.47586 * 59.99919 * 1 2 3 32 32 H 1.09003 * 109.46815 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.46953 * 120.00233 * 2 1 3 34 34 H 1.07996 * 122.90103 * 180.30948 * 5 4 3 35 35 H 1.08995 * 109.63050 * 6.02027 * 10 9 7 36 36 H 1.09004 * 109.61826 * 245.45879 * 10 9 7 37 37 H 1.08996 * 109.50302 * 180.20544 * 13 11 10 38 38 H 1.08993 * 109.51000 * 300.33504 * 13 11 10 39 39 H 1.09001 * 109.41853 * 300.47640 * 14 13 11 40 40 H 1.08996 * 109.36143 * 180.64039 * 14 13 11 41 41 H 1.09007 * 109.50013 * 179.49140 * 15 14 13 42 42 H 1.08997 * 109.53800 * 59.39804 * 15 14 13 43 43 H 1.09007 * 109.62648 * 114.56218 * 18 9 7 44 44 H 1.09000 * 109.63380 * 353.98319 * 18 9 7 45 45 H 0.97003 * 119.99895 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2778 2.1176 1.0628 5 6 2.7152 3.3401 0.8932 6 6 2.8407 3.7104 -0.4058 7 6 3.3018 5.0151 -0.8925 8 8 2.8910 6.0372 -0.3755 9 7 4.1804 5.0817 -1.9124 10 6 4.7187 6.3778 -2.3478 11 6 6.2526 6.3014 -2.3276 12 1 6.6869 7.1952 -2.7754 13 6 6.7170 6.1302 -0.8760 14 6 6.1275 4.8381 -0.3067 15 6 6.6123 3.6415 -1.1278 16 6 6.1480 3.8029 -2.5806 17 1 6.5109 2.9839 -3.2015 18 6 4.6132 3.8591 -2.6033 19 7 6.6534 5.0965 -3.0793 20 6 7.4561 5.1750 -4.1861 21 1 7.3925 4.4181 -4.9539 22 6 8.3513 6.2271 -4.3210 23 7 8.6998 6.9340 -3.2668 24 14 9.0615 6.6399 -5.9987 25 1 7.9590 6.9851 -6.9317 26 1 9.9847 7.7965 -5.8745 27 1 9.8052 5.4665 -6.5236 28 16 2.3575 2.3408 -1.4037 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9527 3.9977 1.7163 35 1 4.3821 7.1609 -1.6684 36 1 4.3762 6.5951 -3.3596 37 1 7.8052 6.0781 -0.8458 38 1 6.3760 6.9783 -0.2823 39 1 5.0393 4.8878 -0.3465 40 1 6.4472 4.7205 0.7287 41 1 6.1970 2.7231 -0.7128 42 1 7.7009 3.5951 -1.0967 43 1 4.2628 3.8782 -3.6353 44 1 4.2073 2.9863 -2.0919 45 1 9.3252 7.6695 -3.3612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040021754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:40 Heat of formation + Delta-G solvation = 62.087212 kcal Electronic energy + Delta-G solvation = -28394.155787 eV Core-core repulsion = 24733.147228 eV Total energy + Delta-G solvation = -3661.008559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.83398 -39.64503 -37.69511 -34.31498 -34.04768 -32.77435 -32.01859 -30.68700 -29.72545 -27.07409 -26.13348 -25.53468 -23.82389 -23.08520 -21.94725 -21.40514 -20.80949 -19.13575 -18.45433 -18.15114 -17.09633 -16.27936 -15.84062 -15.28944 -14.99158 -14.76250 -14.63255 -14.19099 -14.03860 -13.98111 -13.61424 -13.29607 -13.14858 -12.97119 -12.62037 -12.50770 -12.15320 -12.03249 -11.93366 -11.61933 -11.51286 -11.48411 -11.21627 -11.03380 -10.74211 -10.38923 -10.26096 -10.08207 -10.04903 -10.02874 -9.68602 -9.55090 -9.47475 -9.18015 -8.89142 -8.56148 -7.97339 -6.69734 -5.87945 -3.31497 0.28833 1.05574 1.49178 2.53174 3.05470 3.32834 3.36905 3.39932 3.41207 3.90153 4.39558 4.64320 4.67335 4.87222 4.89632 5.07481 5.26072 5.26745 5.33850 5.47940 5.55601 5.58909 5.61295 5.65450 5.80678 5.82719 5.85772 5.95125 6.02377 6.08804 6.22225 6.38178 6.39891 6.43674 6.56862 6.66012 6.80936 6.88397 7.01955 7.07443 7.44488 7.52160 7.56280 7.67858 7.74239 8.30074 8.31578 9.06861 9.69118 10.30211 11.18706 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022131 B = 0.003694 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.868471 B = 7578.065118 C = 8010.795382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.038 3.962 4 N -0.475 5.475 5 C 0.104 3.896 6 C -0.276 4.276 7 C 0.591 3.409 8 O -0.536 6.536 9 N -0.579 5.579 10 C 0.093 3.907 11 C 0.178 3.822 12 H 0.120 0.880 13 C -0.113 4.113 14 C -0.138 4.138 15 C -0.122 4.122 16 C 0.155 3.845 17 H 0.080 0.920 18 C 0.084 3.916 19 N -0.578 5.578 20 C -0.254 4.254 21 H 0.068 0.932 22 C 0.006 3.994 23 N -0.895 5.895 24 Si 0.903 3.097 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 S 0.184 5.816 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.182 0.818 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.795 -11.901 4.118 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C -0.237 4.237 4 N -0.189 5.189 5 C -0.052 4.052 6 C -0.400 4.400 7 C 0.378 3.622 8 O -0.416 6.416 9 N -0.310 5.310 10 C -0.030 4.030 11 C 0.070 3.930 12 H 0.137 0.863 13 C -0.152 4.152 14 C -0.176 4.176 15 C -0.161 4.161 16 C 0.046 3.954 17 H 0.098 0.902 18 C -0.042 4.042 19 N -0.299 5.299 20 C -0.383 4.383 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.538 5.538 24 Si 0.733 3.267 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.209 1.209 28 S 0.441 5.559 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.199 0.801 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.018 -11.673 3.756 17.884 hybrid contribution 0.830 0.788 0.000 1.144 sum -12.188 -10.885 3.756 16.767 Atomic orbital electron populations 1.21780 0.93406 1.02614 1.02800 1.20259 0.96759 0.87437 1.04499 1.27585 1.01905 1.02131 0.92103 1.66175 1.15205 1.06074 1.31410 1.21995 0.96512 0.91550 0.95108 1.25797 1.15828 1.00534 0.97871 1.16573 0.78834 0.86352 0.80449 1.90822 1.57856 1.34561 1.58340 1.48073 1.41423 1.09623 1.31925 1.22641 0.98120 0.83010 0.99196 1.21198 0.87382 0.93343 0.91034 0.86292 1.21787 1.01782 0.94766 0.96839 1.22097 1.02210 0.96287 0.97023 1.21936 1.01026 0.96338 0.96795 1.21169 0.89614 0.91069 0.93528 0.90175 1.22792 0.99137 0.85591 0.96699 1.44437 1.56125 0.98883 1.30413 1.19095 1.13665 1.10331 0.95217 0.91436 1.25009 0.96695 1.00590 0.97047 1.69973 1.34505 1.22305 1.27067 0.86364 0.78527 0.77737 0.84065 1.21038 1.21671 1.20948 1.84067 1.57148 1.03694 1.10970 0.91288 0.91889 0.92313 0.89423 0.88620 0.80101 0.89895 0.91746 0.90783 0.94357 0.90773 0.94941 0.94402 0.92033 0.91015 0.90932 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.05 -0.37 6.51 -27.88 -0.18 -0.55 16 3 C 0.04 0.42 6.64 -13.29 -0.09 0.33 16 4 N -0.47 -6.39 10.51 -11.50 -0.12 -6.51 16 5 C 0.10 1.51 11.30 -18.85 -0.21 1.29 16 6 C -0.28 -4.18 5.39 -37.10 -0.20 -4.38 16 7 C 0.59 10.61 5.00 -12.85 -0.06 10.54 16 8 O -0.54 -11.08 16.50 5.20 0.09 -10.99 16 9 N -0.58 -10.40 1.65 -173.78 -0.29 -10.68 16 10 C 0.09 1.83 5.88 -3.49 -0.02 1.81 16 11 C 0.18 3.93 2.67 -66.85 -0.18 3.75 16 12 H 0.12 2.99 5.84 -51.93 -0.30 2.69 16 13 C -0.11 -2.43 5.57 -26.54 -0.15 -2.58 16 14 C -0.14 -2.68 5.55 -26.72 -0.15 -2.83 16 15 C -0.12 -2.28 5.58 -26.54 -0.15 -2.43 16 16 C 0.15 2.95 3.62 -66.85 -0.24 2.71 16 17 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 18 C 0.08 1.37 5.39 -3.49 -0.02 1.36 16 19 N -0.58 -13.15 2.54 -155.44 -0.39 -13.55 16 20 C -0.25 -6.40 9.71 -15.06 -0.15 -6.55 16 21 H 0.07 1.67 7.90 -52.48 -0.41 1.25 16 22 C 0.01 0.15 4.98 -17.43 -0.09 0.06 16 23 N -0.89 -24.10 10.99 55.49 0.61 -23.49 16 24 Si 0.90 20.58 29.59 -169.99 -5.03 15.55 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 S 0.18 2.15 19.90 -107.50 -2.14 0.01 16 29 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.18 2.46 8.06 -52.49 -0.42 2.04 16 35 H 0.08 1.64 7.01 -51.93 -0.36 1.27 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.80 8.01 -51.93 -0.42 1.38 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.41 2.38 -52.43 -0.12 1.28 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.05 3.82 -28.26 -0.11 0.94 16 45 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -29.22 355.58 -9.79 -39.01 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.35 Total: 3.35 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.52 Total: 1.96 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.19 Total: -54.24 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.14 Total: 0.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.22 -9.79 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040021754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.095 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds