Wall clock time and date at job start Tue Mar 31 2020 18:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47109 * 2 1 4 4 N 1.29432 * 124.80428 * 89.95576 * 3 2 1 5 5 C 1.30944 * 117.36185 * 179.76487 * 4 3 2 6 6 C 1.35656 * 114.19195 * 0.48739 * 5 4 3 7 7 C 1.46686 * 126.12998 * 179.82140 * 6 5 4 8 8 O 1.21687 * 119.99660 * 316.04162 * 7 6 5 9 9 N 1.34776 * 119.99971 * 136.04619 * 7 6 5 10 10 C 1.46941 * 120.43842 * 184.16992 * 9 7 6 11 11 C 1.53595 * 108.54679 * 125.74419 * 10 9 7 12 12 H 1.08998 * 110.59628 * 172.12946 * 11 10 9 13 13 C 1.53368 * 108.68430 * 294.32325 * 11 10 9 14 14 C 1.53010 * 109.25495 * 60.26979 * 13 11 10 15 15 C 1.53008 * 109.79734 * 60.57391 * 14 13 11 16 16 C 1.53367 * 109.27319 * 299.43367 * 15 14 13 17 17 H 1.08997 * 111.08372 * 177.80708 * 16 15 14 18 18 C 1.46945 * 120.44017 * 4.14412 * 9 7 6 19 19 N 1.47564 * 107.98144 * 56.34894 * 16 15 14 20 20 C 1.36946 * 121.61022 * 122.25606 * 19 16 15 21 21 H 1.08003 * 119.99680 * 27.16138 * 20 19 16 22 22 C 1.38805 * 120.00059 * 207.16691 * 20 19 16 23 23 N 1.31623 * 120.00102 * 18.46871 * 22 20 19 24 24 Si 1.86796 * 119.99973 * 198.47045 * 22 20 19 25 25 H 1.48500 * 109.47365 * 59.99841 * 24 22 20 26 26 H 1.48505 * 109.47276 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47033 * 299.99606 * 24 22 20 28 28 S 1.70954 * 124.80488 * 270.00205 * 3 2 1 29 29 H 1.09010 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47453 * 299.99851 * 1 2 3 31 31 H 1.08996 * 109.47586 * 59.99919 * 1 2 3 32 32 H 1.09003 * 109.46815 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.46953 * 120.00233 * 2 1 3 34 34 H 1.07996 * 122.90103 * 180.30948 * 5 4 3 35 35 H 1.08995 * 109.63050 * 6.02027 * 10 9 7 36 36 H 1.09004 * 109.61826 * 245.45879 * 10 9 7 37 37 H 1.08996 * 109.50302 * 180.20544 * 13 11 10 38 38 H 1.08993 * 109.51000 * 300.33504 * 13 11 10 39 39 H 1.09001 * 109.41853 * 300.47640 * 14 13 11 40 40 H 1.08996 * 109.36143 * 180.64039 * 14 13 11 41 41 H 1.09007 * 109.50013 * 179.49140 * 15 14 13 42 42 H 1.08997 * 109.53800 * 59.39804 * 15 14 13 43 43 H 1.09007 * 109.62648 * 114.56218 * 18 9 7 44 44 H 1.09000 * 109.63380 * 353.98319 * 18 9 7 45 45 H 0.97003 * 119.99895 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2778 2.1176 1.0628 5 6 2.7152 3.3401 0.8932 6 6 2.8407 3.7104 -0.4058 7 6 3.3018 5.0151 -0.8925 8 8 2.8910 6.0372 -0.3755 9 7 4.1804 5.0817 -1.9124 10 6 4.7187 6.3778 -2.3478 11 6 6.2526 6.3014 -2.3276 12 1 6.6869 7.1952 -2.7754 13 6 6.7170 6.1302 -0.8760 14 6 6.1275 4.8381 -0.3067 15 6 6.6123 3.6415 -1.1278 16 6 6.1480 3.8029 -2.5806 17 1 6.5109 2.9839 -3.2015 18 6 4.6132 3.8591 -2.6033 19 7 6.6534 5.0965 -3.0793 20 6 7.4561 5.1750 -4.1861 21 1 7.3925 4.4181 -4.9539 22 6 8.3513 6.2271 -4.3210 23 7 8.6998 6.9340 -3.2668 24 14 9.0615 6.6399 -5.9987 25 1 7.9590 6.9851 -6.9317 26 1 9.9847 7.7965 -5.8745 27 1 9.8052 5.4665 -6.5236 28 16 2.3575 2.3408 -1.4037 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9527 3.9977 1.7163 35 1 4.3821 7.1609 -1.6684 36 1 4.3762 6.5951 -3.3596 37 1 7.8052 6.0781 -0.8458 38 1 6.3760 6.9783 -0.2823 39 1 5.0393 4.8878 -0.3465 40 1 6.4472 4.7205 0.7287 41 1 6.1970 2.7231 -0.7128 42 1 7.7009 3.5951 -1.0967 43 1 4.2628 3.8782 -3.6353 44 1 4.2073 2.9863 -2.0919 45 1 9.3252 7.6695 -3.3612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040021754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:39 Heat of formation + Delta-G solvation = 46.246532 kcal Electronic energy + Delta-G solvation = -28394.842691 eV Core-core repulsion = 24733.147228 eV Total energy + Delta-G solvation = -3661.695463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.28069 -40.73587 -39.21313 -35.78253 -34.93924 -34.47891 -33.61127 -32.38117 -30.92428 -28.58769 -27.42563 -26.80516 -25.49409 -24.02911 -23.31494 -23.01236 -22.19916 -20.48310 -19.86726 -19.39410 -18.54603 -17.70589 -17.21696 -16.62230 -16.58782 -16.08798 -15.71404 -15.67182 -15.30057 -15.13967 -14.84807 -14.78498 -14.60810 -14.37887 -14.19475 -13.71686 -13.51187 -13.30443 -13.13680 -13.05357 -12.73696 -12.66615 -12.53643 -12.46950 -12.19391 -12.02928 -11.90840 -11.84413 -11.73407 -11.46419 -11.16146 -11.09339 -10.72064 -10.46432 -10.30202 -9.89863 -9.54618 -8.51285 -7.81780 -5.27159 -0.73353 0.05316 0.50073 1.40031 1.50616 1.53435 1.58553 1.74660 2.03073 2.53743 3.04100 3.31358 3.39535 3.49225 3.90258 4.03508 4.08445 4.14526 4.20941 4.22204 4.27498 4.30685 4.34102 4.39240 4.54523 4.66868 4.70035 4.77191 4.79892 4.83846 4.98285 5.00349 5.03486 5.06388 5.12090 5.20159 5.26809 5.35602 5.36911 5.46089 5.63514 5.70377 5.80387 6.27433 6.39925 6.57913 6.90253 7.14650 7.82820 8.41577 9.21909 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022131 B = 0.003694 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.868471 B = 7578.065118 C = 8010.795382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.053 3.947 4 N -0.496 5.496 5 C 0.111 3.889 6 C -0.316 4.316 7 C 0.595 3.405 8 O -0.571 6.571 9 N -0.581 5.581 10 C 0.105 3.895 11 C 0.179 3.821 12 H 0.085 0.915 13 C -0.105 4.105 14 C -0.135 4.135 15 C -0.115 4.115 16 C 0.148 3.852 17 H 0.091 0.909 18 C 0.092 3.908 19 N -0.592 5.592 20 C -0.256 4.256 21 H 0.074 0.926 22 C -0.044 4.044 23 N -0.923 5.923 24 Si 0.962 3.038 25 H -0.280 1.280 26 H -0.301 1.301 27 H -0.278 1.278 28 S 0.228 5.772 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.180 0.820 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.697 -15.127 3.560 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.221 4.221 4 N -0.211 5.211 5 C -0.046 4.046 6 C -0.440 4.440 7 C 0.384 3.616 8 O -0.452 6.452 9 N -0.312 5.312 10 C -0.019 4.019 11 C 0.072 3.928 12 H 0.103 0.897 13 C -0.145 4.145 14 C -0.173 4.173 15 C -0.154 4.154 16 C 0.041 3.959 17 H 0.109 0.891 18 C -0.033 4.033 19 N -0.313 5.313 20 C -0.386 4.386 21 H 0.091 0.909 22 C -0.240 4.240 23 N -0.568 5.568 24 Si 0.791 3.209 25 H -0.207 1.207 26 H -0.228 1.228 27 H -0.204 1.204 28 S 0.486 5.514 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.197 0.803 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.940 -14.947 3.180 21.372 hybrid contribution 1.341 1.667 0.230 2.151 sum -13.599 -13.281 3.411 19.312 Atomic orbital electron populations 1.21791 0.92479 1.03999 1.02174 1.20556 0.97382 0.85141 1.06238 1.28338 0.99197 1.03150 0.91431 1.66269 1.16607 1.05878 1.32314 1.22089 0.95538 0.92004 0.94987 1.25514 1.18640 1.00798 0.99059 1.16869 0.78063 0.87148 0.79536 1.90797 1.58912 1.36300 1.59209 1.48056 1.41557 1.09314 1.32322 1.22297 0.96153 0.84167 0.99279 1.20970 0.88869 0.92197 0.90766 0.89724 1.21653 0.99527 0.96245 0.97039 1.22084 1.02620 0.95309 0.97280 1.21852 0.99568 0.97226 0.96719 1.21403 0.91308 0.89624 0.93612 0.89103 1.22785 0.96987 0.85881 0.97627 1.44591 1.56045 1.00409 1.30273 1.19417 1.13074 1.10026 0.96092 0.90869 1.25657 0.97711 1.01085 0.99566 1.70138 1.35376 1.22723 1.28591 0.85434 0.77622 0.77019 0.80825 1.20668 1.22813 1.20375 1.83812 1.56371 1.01358 1.09810 0.88974 0.93295 0.92189 0.86733 0.87827 0.80304 0.90424 0.91560 0.94288 0.94513 0.89788 0.94420 0.91316 0.94465 0.89962 0.88323 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 71.98 0.71 -0.66 16 2 C -0.05 -0.57 6.51 29.85 0.19 -0.38 16 3 C 0.05 1.00 6.64 88.46 0.59 1.59 16 4 N -0.50 -12.09 10.51 -190.31 -2.00 -14.09 16 5 C 0.11 3.01 11.30 84.23 0.95 3.96 16 6 C -0.32 -8.92 5.39 23.88 0.13 -8.79 16 7 C 0.60 20.74 5.00 86.45 0.43 21.18 16 8 O -0.57 -23.57 16.50 -4.31 -0.07 -23.64 16 9 N -0.58 -20.26 1.65 -821.94 -1.36 -21.61 16 10 C 0.10 4.15 5.88 86.50 0.51 4.66 16 11 C 0.18 8.17 2.67 45.11 0.12 8.29 16 12 H 0.09 4.48 5.84 -2.39 -0.01 4.47 16 13 C -0.11 -4.71 5.57 30.72 0.17 -4.54 16 14 C -0.13 -5.19 5.55 30.60 0.17 -5.02 16 15 C -0.11 -4.15 5.58 30.72 0.17 -3.97 16 16 C 0.15 5.41 3.62 45.11 0.16 5.58 16 17 H 0.09 3.14 8.01 -2.39 -0.02 3.12 16 18 C 0.09 2.80 5.39 86.50 0.47 3.27 16 19 N -0.59 -27.01 2.54 -645.68 -1.64 -28.65 16 20 C -0.26 -12.94 9.71 84.03 0.82 -12.13 16 21 H 0.07 3.55 7.90 -2.91 -0.02 3.53 16 22 C -0.04 -2.31 4.98 84.86 0.42 -1.89 16 23 N -0.92 -51.69 10.99 21.65 0.24 -51.45 16 24 Si 0.96 42.98 29.59 68.60 2.03 45.01 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 28 S 0.23 4.51 19.90 -56.49 -1.12 3.39 16 29 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.18 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.08 3.15 7.01 -2.39 -0.02 3.13 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.04 1.99 8.01 -2.39 -0.02 1.97 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 3.13 2.38 -3.39 -0.01 3.12 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.10 2.49 3.82 -17.44 -0.07 2.42 16 45 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -64.84 355.58 3.04 -61.80 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.95 Total: 18.10 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.02 Total: 11.15 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -4.75 Total: -115.80 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.07 Total: -23.64 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.12 Total: 3.39 kcal Total: -64.84 3.04 -61.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040021754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.046 kcal (2) G-P(sol) polarization free energy of solvation -64.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds