Wall clock time and date at job start Tue Mar 31 2020 18:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46792 * 2 1 4 4 N 1.30944 * 122.90689 * 90.02592 * 3 2 1 5 5 C 1.29423 * 117.36549 * 179.97438 * 4 3 2 6 6 S 1.70957 * 110.39222 * 0.24677 * 5 4 3 7 7 C 1.35664 * 122.90203 * 269.98297 * 3 2 1 8 8 C 1.46681 * 126.13200 * 0.03976 * 7 3 2 9 9 O 1.21678 * 120.00039 * 354.66142 * 8 7 3 10 10 N 1.34776 * 119.99898 * 174.66427 * 8 7 3 11 11 C 1.47564 * 125.67558 * 184.50137 * 10 8 7 12 12 C 1.55439 * 104.88160 * 156.03032 * 11 10 8 13 13 C 1.53649 * 101.31254 * 35.82881 * 12 11 10 14 14 C 1.53652 * 111.42377 * 204.77376 * 13 12 11 15 15 C 1.55184 * 101.41830 * 272.73376 * 14 13 12 16 16 N 1.47567 * 105.00635 * 324.50495 * 15 14 13 17 17 C 1.36936 * 125.67476 * 203.82621 * 16 15 14 18 18 H 1.08000 * 120.00227 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99702 * 0.04322 * 17 16 15 20 20 N 1.31613 * 120.00304 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46885 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47276 * 119.99562 * 21 19 17 24 24 H 1.48497 * 109.47103 * 239.99640 * 21 19 17 25 25 C 1.47404 * 108.65126 * 23.86237 * 16 15 14 26 26 C 1.47413 * 125.67497 * 4.80814 * 10 8 7 27 27 H 1.08998 * 109.47315 * 300.00341 * 1 2 3 28 28 H 1.09004 * 109.46996 * 60.00073 * 1 2 3 29 29 H 1.08999 * 109.46746 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46868 * 240.00287 * 2 1 3 31 31 H 1.08996 * 109.47251 * 119.99949 * 2 1 3 32 32 H 1.08005 * 124.80288 * 179.97438 * 5 4 3 33 33 H 1.09003 * 110.33383 * 275.02236 * 11 10 8 34 34 H 1.09002 * 110.32986 * 37.25447 * 11 10 8 35 35 H 1.08994 * 111.25084 * 277.75725 * 12 11 10 36 36 H 1.09004 * 110.94508 * 153.76869 * 12 11 10 37 37 H 1.09001 * 111.03184 * 30.76871 * 14 13 12 38 38 H 1.09001 * 111.03951 * 154.69539 * 14 13 12 39 39 H 1.08995 * 110.33757 * 205.61780 * 15 14 13 40 40 H 1.09002 * 110.42283 * 83.43193 * 15 14 13 41 41 H 0.96996 * 120.00385 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.98120 * 238.54444 * 25 16 15 43 43 H 1.08996 * 109.98620 * 117.23257 * 25 16 15 44 44 H 1.09001 * 109.98395 * 301.45803 * 26 10 8 45 45 H 1.08990 * 109.98414 * 62.72543 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2699 2.0914 1.0993 5 6 2.6996 3.3058 0.9744 6 16 2.8390 3.7213 -0.6781 7 6 2.2782 2.1155 -1.1390 8 6 2.1029 1.6208 -2.5087 9 8 1.7956 0.4594 -2.7014 10 7 2.2823 2.4528 -3.5538 11 6 2.0491 2.1163 -4.9715 12 6 1.7883 3.4812 -5.6680 13 6 2.7461 4.4016 -4.8958 14 6 2.2780 5.8643 -4.9418 15 6 2.9373 6.3567 -6.2575 16 7 4.2334 5.6540 -6.3216 17 6 5.3370 6.0758 -7.0138 18 1 6.2422 5.4869 -6.9978 19 6 5.2925 7.2605 -7.7360 20 7 4.1894 7.9781 -7.7558 21 14 6.7978 7.8354 -8.6810 22 1 7.9001 6.8572 -8.4987 23 1 6.4649 7.9435 -10.1241 24 1 7.2252 9.1629 -8.1708 25 6 4.1421 4.4222 -5.5172 26 6 2.7502 3.8482 -3.4713 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.9327 3.9650 1.7976 33 1 2.9293 1.6334 -5.3960 34 1 1.1772 1.4693 -5.0687 35 1 0.7533 3.7983 -5.5407 36 1 2.0546 3.4369 -6.7241 37 1 1.1913 5.9256 -5.0019 38 1 2.6527 6.4223 -4.0837 39 1 3.0923 7.4350 -6.2231 40 1 2.3195 6.0908 -7.1152 41 1 4.1583 8.8061 -8.2601 42 1 4.8989 4.4327 -4.7327 43 1 4.2787 3.5494 -6.1556 44 1 2.0760 4.4307 -2.8435 45 1 3.7598 3.8790 -3.0619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041343810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:16 Heat of formation + Delta-G solvation = 42.325347 kcal Electronic energy + Delta-G solvation = -27162.048174 eV Core-core repulsion = 23500.182676 eV Total energy + Delta-G solvation = -3661.865498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69771 -39.96828 -38.31191 -35.73981 -33.59223 -32.80440 -31.16821 -29.90245 -29.18193 -28.40812 -26.39609 -25.63448 -23.88713 -23.43277 -22.90296 -20.97420 -20.42821 -19.14664 -18.63781 -18.37911 -16.98692 -16.59905 -16.10641 -15.92832 -14.98858 -14.91546 -14.76395 -14.42363 -14.31153 -13.91565 -13.88808 -13.78759 -13.24165 -12.89647 -12.57275 -12.50223 -12.41015 -12.09610 -11.96431 -11.66726 -11.52439 -11.39413 -11.24047 -11.02752 -10.98159 -10.83605 -10.33597 -10.31817 -10.07762 -9.97976 -9.84497 -9.72673 -9.68717 -9.55751 -9.16462 -8.71292 -8.63432 -6.90237 -5.71644 -3.13125 0.06687 1.03057 1.41761 2.27153 2.82464 3.03105 3.35827 3.41986 3.44035 3.92250 4.33251 4.42085 4.60013 4.75512 4.79549 4.87296 4.91852 5.21630 5.23581 5.29572 5.35002 5.36784 5.42551 5.51537 5.58849 5.72743 5.79140 5.82388 5.83241 5.89167 6.00109 6.05186 6.15188 6.18717 6.21309 6.26803 6.44768 6.52278 6.63235 6.72397 7.31302 7.43409 7.44840 7.56664 7.78636 7.96967 8.28791 9.15733 9.76147 10.40505 11.32475 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022093 B = 0.002915 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.053382 B = 9604.501145 C =10176.668590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 C 0.145 3.855 4 N -0.477 5.477 5 C 0.012 3.988 6 S 0.191 5.809 7 C -0.292 4.292 8 C 0.610 3.390 9 O -0.528 6.528 10 N -0.611 5.611 11 C 0.111 3.889 12 C -0.114 4.114 13 C -0.076 4.076 14 C -0.132 4.132 15 C 0.155 3.845 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.151 3.849 26 C 0.104 3.896 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.202 0.798 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.014 0.986 41 H 0.252 0.748 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.075 0.925 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.901 -9.290 14.789 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C 0.006 3.994 4 N -0.190 5.190 5 C -0.282 4.282 6 S 0.448 5.552 7 C -0.416 4.416 8 C 0.398 3.602 9 O -0.407 6.407 10 N -0.344 5.344 11 C -0.011 4.011 12 C -0.152 4.152 13 C -0.077 4.077 14 C -0.171 4.171 15 C 0.030 3.970 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.025 3.975 26 C -0.020 4.020 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.219 0.781 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.093 0.907 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.719 -9.008 14.655 18.468 hybrid contribution 0.608 -0.250 -0.298 0.722 sum -6.111 -9.258 14.356 18.143 Atomic orbital electron populations 1.21598 0.93981 1.02069 1.01735 1.20445 0.96614 0.88487 1.04612 1.20697 0.95519 0.98159 0.85047 1.66169 1.15126 1.06325 1.31405 1.28934 1.00818 0.96128 1.02346 1.84559 1.58305 1.11324 1.01028 1.25478 1.18159 0.99037 0.98939 1.16241 0.77503 0.84680 0.81777 1.90766 1.49323 1.16035 1.84592 1.48510 1.65584 1.13284 1.06974 1.22434 1.01681 0.97952 0.79017 1.22722 0.99410 0.92690 1.00388 1.21495 0.97725 0.96736 0.91786 1.22902 0.99502 0.92708 1.01968 1.21971 0.84519 1.00564 0.89951 1.44619 1.10869 1.20833 1.56626 1.19112 0.90198 1.03791 1.21949 0.90455 1.24773 0.97547 0.97621 1.00626 1.69792 1.25458 1.16019 1.45762 0.86014 0.81762 0.78391 0.79426 1.20533 1.21747 1.21733 1.21131 0.91646 0.90927 0.93781 1.22196 0.99821 0.81193 0.98822 0.92923 0.92570 0.91845 0.87535 0.90412 0.78103 0.90885 0.90332 0.90574 0.88883 0.91849 0.91748 0.87608 0.96795 0.93748 0.95701 0.95671 0.90692 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 37.16 0.37 -1.06 16 2 C -0.06 -0.72 5.82 -27.88 -0.16 -0.88 16 3 C 0.14 1.85 6.04 -83.89 -0.51 1.34 16 4 N -0.48 -5.74 10.50 -11.53 -0.12 -5.86 16 5 C 0.01 0.12 12.22 51.75 0.63 0.75 16 6 S 0.19 1.95 18.74 -107.50 -2.01 -0.07 16 7 C -0.29 -3.80 6.40 -37.10 -0.24 -4.04 16 8 C 0.61 8.92 7.80 -12.85 -0.10 8.82 16 9 O -0.53 -8.66 14.55 5.21 0.08 -8.58 16 10 N -0.61 -8.45 3.34 -172.22 -0.58 -9.03 16 11 C 0.11 1.47 6.87 -2.16 -0.01 1.45 16 12 C -0.11 -1.57 5.87 -25.10 -0.15 -1.71 16 13 C -0.08 -1.17 0.61 -154.02 -0.09 -1.27 16 14 C -0.13 -2.20 5.93 -25.24 -0.15 -2.35 16 15 C 0.15 3.46 5.83 -2.30 -0.01 3.45 16 16 N -0.60 -14.46 3.41 -170.40 -0.58 -15.04 16 17 C -0.22 -5.93 10.28 -15.06 -0.15 -6.09 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -25.81 10.09 55.49 0.56 -25.25 16 21 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.15 2.90 6.39 -3.64 -0.02 2.88 16 26 C 0.10 1.38 4.45 -3.64 -0.02 1.37 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 1.38 5.90 -51.93 -0.31 1.07 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.20 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 35 H 0.08 0.96 7.82 -51.93 -0.41 0.56 16 36 H 0.09 1.37 7.94 -51.93 -0.41 0.96 16 37 H 0.06 0.93 7.78 -51.93 -0.40 0.53 16 38 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 39 H 0.11 2.71 5.89 -51.93 -0.31 2.41 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.03 0.48 7.44 -51.93 -0.39 0.10 16 43 H 0.03 0.49 7.78 -51.93 -0.40 0.09 16 44 H 0.08 0.92 6.35 -51.91 -0.33 0.59 16 45 H 0.08 1.02 6.56 -51.93 -0.34 0.68 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -30.72 364.07 -9.55 -40.27 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.64 Total: -0.62 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.71 Total: 2.28 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.72 Total: -55.18 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.01 Total: -0.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.72 -9.55 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041343810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.596 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds